The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027759	Pseudomonas sp. R2-7-07 chromosome, complete genome	5799132	1368809	1435266	5799132	tRNA,tail,plate,transposase	uncultured_Caudovirales_phage(32.0%)	74	NA	NA
AZF46447.1|1368809_1369910_-|transposase	putative transposase YagA	transposase	NA	NA	NA	NA
AZF46448.1|1370249_1371167_-	Transcriptional activator MetR	NA	NA	NA	NA	NA
AZF46449.1|1371220_1372369_+	Hydrolase, alpha/beta fold family	NA	A0A249XU20	Mycobacterium_phage	27.3	9.6e-05
AZF46450.1|1372425_1373079_+	2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain	NA	NA	NA	NA	NA
AZF46451.1|1373122_1373263_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46452.1|1373281_1374202_+	Arginase	NA	NA	NA	NA	NA
AZF46453.1|1374198_1374579_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA	NA
AZF46454.1|1374575_1374980_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA	NA
AZF46455.1|1375111_1375867_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46456.1|1376098_1376797_+	2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase	NA	NA	NA	NA	NA
AZF46457.1|1376789_1378184_+	Aminotransferase, class III	NA	NA	NA	NA	NA
AZF46458.1|1378180_1379092_+	putative esterase	NA	NA	NA	NA	NA
AZF46459.1|1379171_1380296_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46460.1|1380295_1382074_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46461.1|1382063_1383461_+	Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake	NA	NA	NA	NA	NA
AZF46462.1|1383583_1383922_-	Membrane protein glpM	NA	NA	NA	NA	NA
AZF46463.1|1383921_1385259_-	Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake	NA	NA	NA	NA	NA
AZF46464.1|1385255_1387157_-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system	NA	NA	NA	NA	NA
AZF46465.1|1387167_1387323_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46466.1|1387326_1388061_-	Glutamate Aspartate transport ATP-binding protein GltL	NA	G9BWD6	Planktothrix_phage	38.9	1.0e-31
AZF46467.1|1388057_1388729_-	Glutamate Aspartate transport system permease protein GltK	NA	NA	NA	NA	NA
AZF46468.1|1388728_1389475_-	Glutamate Aspartate transport system permease protein GltJ	NA	NA	NA	NA	NA
AZF46469.1|1389667_1390594_-	Glutamate Aspartate periplasmic binding protein precursor GltI	NA	NA	NA	NA	NA
AZF46470.1|1390985_1392524_-	Aerobic glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZF46471.1|1392773_1393529_-	Glycerol-3-phosphate regulon repressor GlpR	NA	A0A077SK06	Escherichia_phage	29.5	6.0e-24
AZF46472.1|1393623_1395129_-	Glycerol kinase	NA	NA	NA	NA	NA
AZF46473.1|1395205_1396018_-	Glycerol uptake facilitator protein	NA	NA	NA	NA	NA
AZF46474.1|1396385_1396856_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
AZF46475.1|1396917_1397961_-	Ferric iron ABC transporter, ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	36.4	3.6e-19
AZF46476.1|1397957_1398881_-	Ornithine carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	27.4	2.7e-18
AZF46477.1|1399311_1401420_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA	NA
AZF46478.1|1401519_1401858_+	Glutaredoxin-related protein	NA	NA	NA	NA	NA
AZF46479.1|1402048_1402519_-	Bacterioferritin	NA	NA	NA	NA	NA
AZF46480.1|1402719_1402938_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZF46481.1|1403003_1403162_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46482.1|1403183_1403786_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA	NA
AZF46483.1|1403851_1404526_-	Ribonuclease T	NA	NA	NA	NA	NA
AZF46484.1|1404522_1405569_-	Dihydroorotase	NA	NA	NA	NA	NA
AZF46485.1|1405725_1406634_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA	NA
AZF46486.1|1406763_1407981_+	Argininosuccinate synthase	NA	NA	NA	NA	NA
AZF46487.1|1408607_1409240_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA	NA
AZF46488.1|1409327_1409510_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46489.1|1409616_1410255_-	Endonuclease III	NA	NA	NA	NA	NA
AZF46490.1|1410324_1411299_-	Electron transport complex protein RnfB	NA	NA	NA	NA	NA
AZF46491.1|1411386_1413438_-|tRNA	Methionyl-tRNA synthetase	tRNA	NA	NA	NA	NA
AZF46492.1|1413610_1414705_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA	NA
AZF46493.1|1415158_1415482_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZF46494.1|1415624_1418216_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	21.5	2.1e-28
AZF46495.1|1418399_1418771_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46496.1|1418763_1419252_-	GepA protein	NA	D0UIM3	Aggregatibacter_phage	44.5	6.4e-27
AZF46497.1|1419515_1420250_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	87.3	1.1e-118
AZF46498.1|1420437_1420557_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46499.1|1420840_1421179_+	Holin	NA	B5TK61	Pseudomonas_phage	81.8	2.8e-45
AZF46500.1|1421198_1421714_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46501.1|1421717_1422326_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	52.3	8.5e-45
AZF46502.1|1422338_1422671_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	69.1	1.0e-36
AZF46503.1|1422667_1423663_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	64.7	7.0e-113
AZF46504.1|1423659_1424298_+|tail	Phage tail fiber	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	53.8	7.3e-39
AZF46505.1|1424294_1424825_+|tail	Phage tail fiber protein	tail	B0ZSG1	Halomonas_phage	56.2	6.5e-49
AZF46506.1|1424873_1425656_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46507.1|1425658_1425961_+	Phage protein	NA	Q8H9M8	Vibrio_phage	48.1	4.7e-12
AZF46508.1|1426049_1426223_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46509.1|1426225_1427392_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	57.0	1.2e-124
AZF46510.1|1427391_1427898_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	35.1	3.8e-22
AZF46511.1|1427950_1428532_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	37.7	5.9e-27
AZF46512.1|1428528_1428654_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46513.1|1428660_1430880_+|tail	Phage tail length tape-measure protein	tail	NA	NA	NA	NA
AZF46514.1|1430879_1431263_+|tail	Unclassified tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	56.7	2.3e-35
AZF46515.1|1431255_1431468_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	62.9	2.0e-17
AZF46516.1|1431477_1432479_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	56.0	3.6e-101
AZF46517.1|1432502_1433060_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	71.0	6.8e-73
AZF46518.1|1433047_1433542_+	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	59.5	2.6e-36
AZF46519.1|1433623_1434124_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	83.1	3.7e-70
AZF46520.1|1434207_1435266_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	62.4	2.4e-111
>prophage 2
CP027759	Pseudomonas sp. R2-7-07 chromosome, complete genome	5799132	1541057	1546044	5799132		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AZF46625.1|1541057_1541807_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	49.4	2.1e-61
AZF46626.1|1541806_1542484_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	53.1	3.1e-43
AZF46627.1|1542575_1543529_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	9.4e-06
AZF46628.1|1543634_1544642_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	36.2	1.3e-34
AZF46629.1|1544880_1545090_-	Cold shock protein of CSP family	NA	Q9AZD3	Lactococcus_phage	66.7	2.2e-16
AZF46630.1|1545477_1546044_+	Deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	73.3	6.2e-74
>prophage 3
CP027759	Pseudomonas sp. R2-7-07 chromosome, complete genome	5799132	1666427	1715668	5799132	protease,tail,portal,plate,terminase	uncultured_Caudovirales_phage(63.16%)	58	NA	NA
AZF46750.1|1666427_1667867_+|protease	HtrA protease/chaperone protein	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.9	5.9e-28
AZF46751.1|1667934_1669368_-|protease	Exported zinc metalloprotease YfgC precursor	protease	NA	NA	NA	NA
AZF46752.1|1669463_1669703_+	Rhodanese-like domain protein	NA	NA	NA	NA	NA
AZF46753.1|1669722_1670196_-	Thiol peroxidase, Bcp-type	NA	NA	NA	NA	NA
AZF46754.1|1670206_1670767_-	Glycine cleavage system transcriptional antiactivator GcvR	NA	NA	NA	NA	NA
AZF46755.1|1671029_1671908_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZF46756.1|1671925_1673041_+	Outer membrane beta-barrel assembly protein BamC	NA	NA	NA	NA	NA
AZF46757.1|1673045_1673804_+	Metal-dependent hydrolase of the beta-lactamase superfamily I	NA	NA	NA	NA	NA
AZF46758.1|1673831_1674545_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3HWF9	Synechococcus_phage	37.6	6.7e-41
AZF46759.1|1674970_1675522_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46760.1|1675558_1676776_-	Mobile element protein	NA	A0A2H4JGM5	uncultured_Caudovirales_phage	36.6	1.9e-56
AZF46761.1|1676772_1676988_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46762.1|1677439_1677982_-	putative hydrolase, HD superfamily	NA	A0A2D1GNL9	Pseudomonas_phage	42.5	1.9e-27
AZF46763.1|1677978_1678377_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46764.1|1678425_1678752_-	transcriptional regulator, putative	NA	NA	NA	NA	NA
AZF46765.1|1678907_1679192_-	DNA-binding protein Roi-related protein	NA	NA	NA	NA	NA
AZF46766.1|1679201_1679783_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46767.1|1679779_1679956_-	hypothetical protein	NA	NA	NA	NA	NA
AZF46768.1|1680141_1680954_+	hypothetical protein	NA	A0A0F7L9X0	Escherichia_phage	26.2	3.7e-11
AZF46769.1|1681028_1681745_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46770.1|1681755_1682481_-	repressor protein c2	NA	A8CGC0	Salmonella_phage	39.9	2.7e-29
AZF46771.1|1682559_1682820_+	Regulatory protein Cro of bacteriophage	NA	A0A0D4DBS7	Acinetobacter_phage	46.2	1.1e-09
AZF46772.1|1683149_1683668_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46773.1|1683660_1683888_+	putative Zinc-finger containing protein	NA	A0A1Z1LZ52	Serratia_phage	48.1	1.0e-06
AZF46774.1|1683877_1686094_+	DNA primase, phage associated	NA	A0A2D1GN57	Marinobacter_phage	47.1	6.4e-191
AZF46775.1|1686086_1686452_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46776.1|1686979_1687324_+	Holin	NA	A0A2H4J893	uncultured_Caudovirales_phage	79.6	2.2e-45
AZF46777.1|1687529_1688135_+	hypothetical protein	NA	A0A2H4JG15	uncultured_Caudovirales_phage	66.5	2.2e-61
AZF46778.1|1688138_1690139_+|terminase	terminase, large subunit, putative	terminase	A0A2H4J898	uncultured_Caudovirales_phage	84.9	0.0e+00
AZF46779.1|1690140_1690347_+	hypothetical protein	NA	A0A2H4JA19	uncultured_Caudovirales_phage	76.5	2.0e-22
AZF46780.1|1690346_1691828_+|portal	phage portal protein, lambda family	portal	A0A2H4JFL5	uncultured_Caudovirales_phage	84.6	3.7e-243
AZF46781.1|1691824_1692967_+|protease	Prophage Clp protease-like protein	protease	A0A2H4JDI2	uncultured_Caudovirales_phage	69.0	3.8e-139
AZF46782.1|1692963_1693302_+	hypothetical protein	NA	A0A2H4JF15	uncultured_Caudovirales_phage	84.4	1.1e-44
AZF46783.1|1693364_1694360_+	Phage protein	NA	A0A2H4J890	uncultured_Caudovirales_phage	87.9	6.3e-170
AZF46784.1|1694362_1694683_+	hypothetical protein	NA	A0A2H4J879	uncultured_Caudovirales_phage	70.5	2.8e-39
AZF46785.1|1694679_1695339_+	hypothetical protein	NA	A0A2H4JBV1	uncultured_Caudovirales_phage	69.9	4.0e-80
AZF46786.1|1695338_1695854_+	hypothetical protein	NA	A0A2H4J881	uncultured_Caudovirales_phage	66.1	5.0e-62
AZF46787.1|1695850_1696417_+|plate	Baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	58.1	4.2e-54
AZF46788.1|1696470_1696698_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46789.1|1696703_1697030_+|plate	Phage baseplate assembly protein	plate	A0A2H4JA09	uncultured_Caudovirales_phage	67.0	1.2e-34
AZF46790.1|1697026_1697908_+|plate	Baseplate assembly protein J	plate	A0A2H4JFK9	uncultured_Caudovirales_phage	67.5	4.0e-104
AZF46791.1|1697909_1698599_+|tail	Phage tail fiber	tail	A0A2H4JDH5	uncultured_Caudovirales_phage	69.1	1.6e-68
AZF46792.1|1698595_1700482_+|tail	Phage tail fiber protein	tail	A4PE45	Ralstonia_virus	49.6	2.2e-67
AZF46793.1|1700492_1700882_+	phage protein	NA	NA	NA	NA	NA
AZF46794.1|1700984_1702151_+|tail	Phage tail sheath monomer	tail	A0A2H4J869	uncultured_Caudovirales_phage	77.4	6.2e-169
AZF46795.1|1702163_1702667_+|tail	Phage major tail tube protein	tail	A0A2H4JBU0	uncultured_Caudovirales_phage	72.5	1.2e-63
AZF46796.1|1702681_1703281_+	hypothetical protein	NA	A0A2H4J873	uncultured_Caudovirales_phage	50.0	1.3e-16
AZF46797.1|1703431_1706581_+	Phage protein	NA	A0A2H4JG00	uncultured_Caudovirales_phage	36.5	2.1e-86
AZF46798.1|1706590_1707436_+	Phage protein U	NA	A0A2H4J875	uncultured_Caudovirales_phage	69.6	1.5e-111
AZF46799.1|1707443_1707617_+|tail	Phage tail protein	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	71.4	1.4e-16
AZF46800.1|1707699_1708740_+	Phage protein D	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	76.2	1.1e-148
AZF46801.1|1708788_1709352_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	80.6	3.9e-84
AZF46802.1|1709333_1709876_+	hypothetical protein	NA	B5TK84	Pseudomonas_phage	57.5	4.9e-44
AZF46803.1|1710024_1710720_+	Dam modification methylase	NA	C7BGE1	Burkholderia_phage	70.4	1.6e-92
AZF46804.1|1711104_1712208_+	hypothetical protein	NA	Q858T2	Yersinia_virus	27.7	5.7e-23
AZF46805.1|1712208_1713132_+	hypothetical protein	NA	NA	NA	NA	NA
AZF46806.1|1713128_1714490_+	DNA-cytosine methyltransferase	NA	M4QPY5	Micromonas_pusilla_virus	39.8	3.5e-38
AZF46807.1|1715038_1715668_+	hypothetical protein	NA	A0A2H4JFQ3	uncultured_Caudovirales_phage	76.9	2.5e-92
>prophage 4
CP027759	Pseudomonas sp. R2-7-07 chromosome, complete genome	5799132	3395932	3405933	5799132	tRNA	uncultured_Caudovirales_phage(71.43%)	13	NA	NA
AZF48329.1|3395932_3396757_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	71.6	2.0e-105
AZF48330.1|3396824_3397061_-	hypothetical protein	NA	NA	NA	NA	NA
AZF48331.1|3397052_3397655_+	Inner membrane protein YohC	NA	NA	NA	NA	NA
AZF48332.1|3397784_3398279_+	Protein SprT	NA	NA	NA	NA	NA
AZF48333.1|3398371_3399547_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA	NA
AZF48334.1|3399706_3400099_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	82.9	1.3e-54
AZF48335.1|3400100_3400451_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	71.9	1.4e-39
AZF48336.1|3400450_3400729_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	58.6	5.8e-25
AZF48337.1|3400725_3401061_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	73.9	1.2e-43
AZF48338.1|3401057_3402059_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	86.3	1.3e-167
AZF48339.1|3402147_3403143_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZF48340.1|3403257_3404652_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZF48341.1|3404652_3405933_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.3	1.1e-97
>prophage 5
CP027759	Pseudomonas sp. R2-7-07 chromosome, complete genome	5799132	5398279	5409458	5799132		Mannheimia_phage(33.33%)	9	NA	NA
AZF50153.1|5398279_5398558_+	HigB toxin protein	NA	A0A0M3LQB1	Mannheimia_phage	39.1	7.1e-15
AZF50154.1|5398572_5398860_+	Antitoxin HigA	NA	A0A0M3LPV0	Mannheimia_phage	51.7	8.4e-19
AZF50155.1|5399034_5399424_-	hypothetical protein	NA	NA	NA	NA	NA
AZF50156.1|5399431_5399782_-	hypothetical protein	NA	NA	NA	NA	NA
AZF50157.1|5400146_5400602_-	chemotaxis protein, putative	NA	NA	NA	NA	NA
AZF50158.1|5400594_5406408_-	Signal transduction histidine kinase CheA	NA	W8CYM9	Bacillus_phage	35.9	3.7e-12
AZF50159.1|5406507_5408559_-	Methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.5	2.1e-18
AZF50160.1|5408555_5409080_-	type IV pili signal transduction protein PilI	NA	Q56AR1	Bacillus_thuringiensis_phage	35.6	2.0e-05
AZF50161.1|5409092_5409458_-	twitching motility protein PilH	NA	W8CYM9	Bacillus_phage	34.2	4.4e-12
