The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027734	Pseudomonas sp. R1-43-08 chromosome, complete genome	5645326	1256398	1335226	5645326	terminase,head,tRNA,plate,protease,tail,capsid	Pseudomonas_phage(53.06%)	98	NA	NA
AZF41263.1|1256398_1256869_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
AZF41264.1|1256992_1258036_-	Ferric iron ABC transporter, ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	37.1	3.3e-20
AZF41265.1|1258032_1258956_-	Ornithine carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	27.4	1.2e-18
AZF41266.1|1259385_1261494_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA	NA
AZF41267.1|1261593_1261932_+	Glutaredoxin-related protein	NA	NA	NA	NA	NA
AZF41268.1|1262123_1262594_-	Bacterioferritin	NA	NA	NA	NA	NA
AZF41269.1|1262794_1263013_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZF41270.1|1263258_1263861_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA	NA
AZF41271.1|1263925_1264600_-	Ribonuclease T	NA	NA	NA	NA	NA
AZF41272.1|1264596_1265643_-	Dihydroorotase	NA	NA	NA	NA	NA
AZF41273.1|1265799_1266708_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA	NA
AZF41274.1|1266837_1268055_+	Argininosuccinate synthase	NA	NA	NA	NA	NA
AZF41275.1|1268683_1269316_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA	NA
AZF41276.1|1269403_1269586_-	hypothetical protein	NA	NA	NA	NA	NA
AZF41277.1|1269692_1270331_-	Endonuclease III	NA	NA	NA	NA	NA
AZF41278.1|1270398_1271373_-	Electron transport complex protein RnfB	NA	NA	NA	NA	NA
AZF41279.1|1271460_1273512_-|tRNA	Methionyl-tRNA synthetase	tRNA	NA	NA	NA	NA
AZF41280.1|1273684_1274779_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA	NA
AZF41281.1|1275233_1275557_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZF41282.1|1275699_1278291_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	21.5	9.6e-29
AZF41283.1|1278474_1278846_-	hypothetical protein	NA	NA	NA	NA	NA
AZF41284.1|1278838_1279327_-	GepA protein	NA	D0UIM3	Aggregatibacter_phage	44.5	6.4e-27
AZF41285.1|1279589_1280324_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	87.3	1.1e-118
AZF41286.1|1280302_1280458_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41287.1|1280510_1280630_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41288.1|1280913_1281252_+	Holin	NA	B5TK61	Pseudomonas_phage	81.8	2.1e-45
AZF41289.1|1281271_1281787_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41290.1|1281790_1282399_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	52.3	1.1e-44
AZF41291.1|1282411_1282744_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	69.1	1.0e-36
AZF41292.1|1282740_1283736_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	64.1	4.6e-112
AZF41293.1|1283732_1284371_+|tail	Phage tail fiber	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	52.5	1.9e-39
AZF41294.1|1284367_1284901_+|tail	Phage tail fiber protein	tail	B0ZSG1	Halomonas_phage	55.3	1.6e-47
AZF41295.1|1284927_1285548_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41296.1|1285560_1285818_+	hypothetical protein	NA	A0A1L5C071	Aquamicrobium_phage	48.5	2.8e-05
AZF41297.1|1285904_1286078_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41298.1|1286080_1287247_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	57.0	1.2e-124
AZF41299.1|1287246_1287753_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	35.1	3.8e-22
AZF41300.1|1287805_1288387_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	38.2	2.6e-27
AZF41301.1|1288383_1288509_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41302.1|1288515_1290738_+|tail	Phage tail length tape-measure protein	tail	NA	NA	NA	NA
AZF41303.1|1290737_1291121_+|tail	Unclassified tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	56.7	3.9e-35
AZF41304.1|1291113_1291326_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	64.3	6.9e-18
AZF41305.1|1291335_1292337_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	55.1	2.6e-99
AZF41306.1|1292359_1292917_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	71.6	1.0e-73
AZF41307.1|1292904_1293405_+	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	57.7	1.4e-32
AZF41308.1|1293486_1293987_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	83.1	3.7e-70
AZF41309.1|1294070_1295129_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	62.4	2.4e-111
AZF41310.1|1295182_1295605_+	Regulatory protein RecX	NA	NA	NA	NA	NA
AZF41311.1|1295666_1296779_-	Decarboxylase family protein	NA	NA	NA	NA	NA
AZF41312.1|1297063_1297498_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA	NA
AZF41313.1|1297778_1298396_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA	NA
AZF41314.1|1298422_1298614_-	hypothetical protein	NA	NA	NA	NA	NA
AZF41315.1|1298647_1299298_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
AZF41316.1|1299373_1299736_+	Diacylglycerol kinase	NA	NA	NA	NA	NA
AZF41317.1|1299739_1300666_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZF41318.1|1300790_1301570_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AZF41319.1|1301689_1302385_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA	NA
AZF41320.1|1302388_1302850_-	Uncharacterized protein YehS	NA	Q9EYF4	Enterobacteria_phage	52.0	2.6e-38
AZF41321.1|1302920_1303631_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA	NA
AZF41322.1|1303740_1304211_-	Acetyltransferase	NA	NA	NA	NA	NA
AZF41323.1|1304311_1305637_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA	NA
AZF41324.1|1305767_1306793_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41325.1|1306789_1308409_+	phage recombinase, putative	NA	Q3HQV4	Burkholderia_phage	54.8	1.4e-158
AZF41326.1|1308476_1308749_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41327.1|1308865_1309420_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41328.1|1309423_1309666_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41329.1|1309662_1309962_+	hypothetical protein	NA	A8YQQ5	Burkholderia_virus	46.2	6.3e-09
AZF41330.1|1309993_1310698_-|protease	SOS-response repressor and protease LexA	protease	A0A1W6JTC8	Pseudomonas_phage	57.0	4.4e-45
AZF41331.1|1310848_1311079_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41332.1|1311075_1311699_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41333.1|1311899_1312631_+	Translation elongation factor G	NA	NA	NA	NA	NA
AZF41334.1|1313334_1313595_-	Phage protein	NA	U3PB63	Vibrio_phage	39.5	1.5e-11
AZF41335.1|1313667_1314414_-|capsid	Phage-related capsid packaging protein	capsid	A0A0U4B0L9	Pseudomonas_phage	77.5	2.5e-102
AZF41336.1|1314448_1316506_-|terminase	Phage terminase, ATPase subunit	terminase	A0A0U4JIZ9	Pseudomonas_phage	70.2	2.5e-258
AZF41337.1|1316668_1317586_+|capsid	Phage capsid scaffolding protein	capsid	A0A0U4JVV6	Pseudomonas_phage	57.1	6.2e-55
AZF41338.1|1317587_1318607_+|capsid	Phage capsid protein	capsid	A0A0U4K5I9	Pseudomonas_phage	67.1	3.7e-125
AZF41339.1|1318603_1319332_+|terminase	putative terminase, endonuclease subunit	terminase	A0A0U4JEJ1	Pseudomonas_phage	61.4	1.1e-70
AZF41340.1|1319430_1319901_+|head	putative head completion/stabilization protein	head	A0A0U4J933	Pseudomonas_phage	57.7	6.0e-38
AZF41341.1|1319897_1320347_+	hypothetical protein	NA	A0A0U4IBS7	Pseudomonas_phage	66.7	5.5e-49
AZF41342.1|1320336_1321017_+	hypothetical protein	NA	A0A0U4ISN1	Pseudomonas_phage	61.1	3.2e-64
AZF41343.1|1321028_1322150_+	Phage protein	NA	A0A0U4KLE6	Pseudomonas_phage	68.6	6.9e-141
AZF41344.1|1322156_1322606_+	hypothetical protein	NA	A0A0U3TH58	Pseudomonas_phage	75.7	2.4e-60
AZF41345.1|1322605_1322824_+	putative Zinc-finger containing protein	NA	A0A0U4IIN4	Pseudomonas_phage	58.5	6.8e-13
AZF41346.1|1322820_1323027_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41347.1|1323023_1323557_+	putative phage lysozyme	NA	NA	NA	NA	NA
AZF41348.1|1323556_1324033_+	Phage outer membrane lytic protein Rz	NA	A0A0U4JXC2	Pseudomonas_phage	51.6	3.7e-27
AZF41349.1|1324046_1324334_+	hypothetical protein	NA	A0A0U4B0P2	Pseudomonas_phage	68.4	1.5e-28
AZF41350.1|1324357_1324498_+	hypothetical protein	NA	A0A0U4B0S4	Pseudomonas_phage	82.6	9.4e-16
AZF41351.1|1324504_1326817_+|tail	Phage-related tail protein	tail	A0A0U4IJ81	Pseudomonas_phage	42.4	2.2e-149
AZF41352.1|1326813_1327131_+	hypothetical protein	NA	A0A0U4B0N5	Pseudomonas_phage	78.4	3.8e-36
AZF41353.1|1327127_1328300_+	Phage protein	NA	A0A0U4JJ14	Pseudomonas_phage	73.8	9.3e-165
AZF41354.1|1328296_1328821_+	hypothetical protein	NA	A0A0U4JVX3	Pseudomonas_phage	81.0	2.6e-82
AZF41355.1|1328830_1331467_+|tail	Phage tail fiber protein	tail	A0A0U4K5K2	Pseudomonas_phage	64.2	9.3e-104
AZF41356.1|1331469_1332108_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41357.1|1332130_1333033_+	hypothetical protein	NA	NA	NA	NA	NA
AZF41358.1|1333029_1333581_+	hypothetical protein	NA	A0A0U4J942	Pseudomonas_phage	63.5	1.4e-54
AZF41359.1|1333577_1334282_+	hypothetical protein	NA	A0A1D9CA29	Salinivibrio_phage	38.8	3.9e-41
AZF41360.1|1334254_1335226_+	hypothetical protein	NA	A0A0U4IBV2	Pseudomonas_phage	67.7	1.7e-124
>prophage 2
CP027734	Pseudomonas sp. R1-43-08 chromosome, complete genome	5645326	1430197	1435242	5645326		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AZF41451.1|1430197_1430947_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	49.4	1.6e-61
AZF41452.1|1430946_1431624_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	53.1	3.1e-43
AZF41453.1|1431833_1432670_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	8.2e-06
AZF41454.1|1432775_1433783_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	36.2	1.3e-34
AZF41455.1|1434078_1434288_-	Cold shock protein of CSP family	NA	Q9AZD3	Lactococcus_phage	66.7	2.2e-16
AZF41456.1|1434675_1435242_+	Deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	73.3	6.2e-74
>prophage 3
CP027734	Pseudomonas sp. R1-43-08 chromosome, complete genome	5645326	3244447	3254469	5645326	tRNA	uncultured_Caudovirales_phage(71.43%)	12	NA	NA
AZF43097.1|3244447_3245272_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	71.6	2.0e-105
AZF43098.1|3245566_3246169_+	Inner membrane protein YohC	NA	NA	NA	NA	NA
AZF43099.1|3246297_3246792_+	Protein SprT	NA	NA	NA	NA	NA
AZF43100.1|3246832_3248008_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA	NA
AZF43101.1|3248167_3248560_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	82.9	2.6e-55
AZF43102.1|3248561_3248912_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	66.9	7.1e-36
AZF43103.1|3248911_3249190_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	57.6	2.9e-24
AZF43104.1|3249186_3249522_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	73.0	1.3e-42
AZF43105.1|3249518_3250520_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	86.3	4.5e-168
AZF43106.1|3250608_3251604_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZF43107.1|3251793_3253188_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZF43108.1|3253188_3254469_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.3	8.2e-98
