The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027732	Pseudomonas sp. R4-35-07 chromosome, complete genome	5836505	1283652	1323836	5836505	plate,tail,tRNA	uncultured_Caudovirales_phage(34.78%)	48	NA	NA
AZF30629.1|1283652_1284123_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
AZF30630.1|1284263_1285307_-	Ferric iron ABC transporter, ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	37.1	3.3e-20
AZF30631.1|1285303_1286227_-	Ornithine carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	27.4	2.7e-18
AZF30632.1|1286657_1288766_+	Formate dehydrogenase-O, major subunit	NA	A0A077SK27	Escherichia_phage	23.6	2.9e-23
AZF30633.1|1288865_1289204_+	Glutaredoxin-related protein	NA	NA	NA	NA	NA
AZF30634.1|1289395_1289866_-	Bacterioferritin	NA	NA	NA	NA	NA
AZF30635.1|1290066_1290285_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZF30636.1|1290530_1291133_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA	NA
AZF30637.1|1291197_1291872_-	Ribonuclease T	NA	NA	NA	NA	NA
AZF30638.1|1291868_1292915_-	Dihydroorotase	NA	NA	NA	NA	NA
AZF30639.1|1293071_1293980_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA	NA
AZF30640.1|1294108_1295326_+	Argininosuccinate synthase	NA	NA	NA	NA	NA
AZF30641.1|1295444_1296776_+	Transposase	NA	NA	NA	NA	NA
AZF30642.1|1297389_1298022_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA	NA
AZF30643.1|1298109_1298292_-	hypothetical protein	NA	NA	NA	NA	NA
AZF30644.1|1298397_1299036_-	Endonuclease III	NA	NA	NA	NA	NA
AZF30645.1|1299105_1300080_-	Electron transport complex protein RnfB	NA	NA	NA	NA	NA
AZF30646.1|1300167_1302219_-|tRNA	Methionyl-tRNA synthetase	tRNA	NA	NA	NA	NA
AZF30647.1|1302391_1303486_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA	NA
AZF30648.1|1303657_1303774_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30649.1|1303941_1304265_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZF30650.1|1304407_1306999_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	21.5	2.1e-28
AZF30651.1|1307182_1307554_-	hypothetical protein	NA	NA	NA	NA	NA
AZF30652.1|1307546_1308035_-	GepA protein	NA	D0UIM3	Aggregatibacter_phage	44.5	3.8e-27
AZF30653.1|1308298_1309033_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	87.3	1.1e-118
AZF30654.1|1309220_1309340_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30655.1|1309622_1309961_+	Holin	NA	B5TK61	Pseudomonas_phage	81.8	2.8e-45
AZF30656.1|1309980_1310496_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30657.1|1310499_1311108_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	52.8	3.8e-45
AZF30658.1|1311120_1311453_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	69.1	1.0e-36
AZF30659.1|1311449_1312445_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	64.4	2.0e-112
AZF30660.1|1312441_1313080_+|tail	Phage tail fiber	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	52.5	1.1e-39
AZF30661.1|1313076_1313610_+|tail	Phage tail fiber protein	tail	B0ZSG1	Halomonas_phage	55.9	1.9e-48
AZF30662.1|1313636_1314257_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30663.1|1314269_1314527_+	hypothetical protein	NA	A0A1L5C071	Aquamicrobium_phage	48.5	4.7e-05
AZF30664.1|1314614_1314788_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30665.1|1314790_1315957_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	56.7	1.2e-124
AZF30666.1|1315956_1316463_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	35.1	1.7e-22
AZF30667.1|1316515_1317097_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	37.7	5.9e-27
AZF30668.1|1317093_1317219_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30669.1|1317225_1319445_+|tail	Phage tail length tape-measure protein	tail	NA	NA	NA	NA
AZF30670.1|1319444_1319828_+|tail	Unclassified tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	57.5	1.3e-35
AZF30671.1|1319820_1320033_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	64.3	1.2e-17
AZF30672.1|1320042_1321044_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	54.8	2.0e-99
AZF30673.1|1321066_1321624_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	70.5	8.9e-73
AZF30674.1|1321611_1322112_+	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	62.4	7.0e-37
AZF30675.1|1322193_1322694_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	83.7	9.7e-71
AZF30676.1|1322777_1323836_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	62.4	2.4e-111
>prophage 2
CP027732	Pseudomonas sp. R4-35-07 chromosome, complete genome	5836505	1426929	1431923	5836505		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AZF30777.1|1426929_1427679_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	49.4	3.6e-61
AZF30778.1|1427678_1428356_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	53.1	3.1e-43
AZF30779.1|1428564_1429401_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	8.2e-06
AZF30780.1|1429506_1430514_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	36.2	1.3e-34
AZF30781.1|1430759_1430969_-	Cold shock protein of CSP family	NA	Q9AZD3	Lactococcus_phage	66.7	2.2e-16
AZF30782.1|1431356_1431923_+	Deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	73.3	6.2e-74
>prophage 3
CP027732	Pseudomonas sp. R4-35-07 chromosome, complete genome	5836505	1623443	1697114	5836505	plate,terminase,capsid,holin,head,tail,integrase,protease,tRNA	Pseudomonas_virus(35.14%)	73	1616107:1616123	1696839:1696855
1616107:1616123	attL	CCAGATCGAGCGGAAGA	NA	NA	NA	NA
AZF30978.1|1623443_1623689_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthesis sulfur carrier protein TusA	tRNA	NA	NA	NA	NA
AZF30979.1|1623796_1625347_-	Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pump	NA	NA	NA	NA	NA
AZF30980.1|1625395_1626538_+	Erythronate-4-phosphate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	28.7	8.6e-22
AZF30981.1|1626596_1626764_-	hypothetical protein	NA	NA	NA	NA	NA
AZF30982.1|1627009_1628776_+	Efflux ABC transporter, permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.4	2.3e-58
AZF30983.1|1628908_1630837_-	Soluble lytic murein transglycosylase precursor	NA	A0A1P8CWQ1	Bacillus_phage	39.4	8.0e-12
AZF30984.1|1631050_1632970_+	Bis-ABC ATPase Uup	NA	A0A2K9L3Z8	Tupanvirus	28.0	2.5e-50
AZF30985.1|1633153_1633594_-	Universal stress protein family	NA	NA	NA	NA	NA
AZF30986.1|1633699_1634137_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30987.1|1634709_1636857_+	Enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZF30988.1|1636886_1638062_+	3-ketoacyl-CoA thiolase	NA	NA	NA	NA	NA
AZF30989.1|1638157_1638394_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30990.1|1638508_1641130_+	DNA topoisomerase I	NA	A0A1V0SB35	Catovirus	33.2	1.9e-88
AZF30991.1|1641365_1641887_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30992.1|1641950_1642184_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30993.1|1642207_1642681_-	Cell division inhibitor-related protein	NA	NA	NA	NA	NA
AZF30994.1|1642691_1643300_-|protease	SOS-response repressor and protease LexA	protease	A0A2H4JG58	uncultured_Caudovirales_phage	53.8	5.6e-12
AZF30995.1|1643563_1644271_+	putative transcriptional regulator for fatty acid degradation FadQ, TetR family	NA	NA	NA	NA	NA
AZF30996.1|1644406_1645417_+	beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
AZF30997.1|1645543_1648831_+	DNA/RNA helicase, SNF2 family	NA	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	30.3	2.2e-46
AZF30998.1|1648962_1649082_+	hypothetical protein	NA	NA	NA	NA	NA
AZF30999.1|1649109_1651800_-	DNA/RNA helicase, SNF2 family	NA	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	31.5	2.3e-49
AZF31000.1|1651809_1652376_-	hypothetical protein	NA	NA	NA	NA	NA
AZF31001.1|1652387_1655837_-	Transcription-repair coupling factor	NA	NA	NA	NA	NA
AZF31002.1|1656177_1657641_+	NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZF31003.1|1658058_1659018_-	Transposase	NA	NA	NA	NA	NA
AZF31004.1|1659499_1660894_+	Soluble pyridine nucleotide transhydrogenase	NA	NA	NA	NA	NA
AZF31005.1|1660936_1661659_-	Glycerophosphoryl diester phosphodiesterase	NA	A0A292GJA3	Xanthomonas_phage	29.8	2.4e-06
AZF31006.1|1661703_1662282_-	hypothetical protein	NA	NA	NA	NA	NA
AZF31007.1|1662265_1662439_-	hypothetical protein	NA	NA	NA	NA	NA
AZF31008.1|1662442_1663627_+	Lipoprotein releasing system transmembrane protein LolC	NA	NA	NA	NA	NA
AZF31009.1|1663619_1664318_+	Lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	42.3	1.4e-38
AZF31010.1|1664378_1665623_+	Lipoprotein releasing system transmembrane protein LolE	NA	NA	NA	NA	NA
AZF31011.1|1665738_1667085_-	Copper sensory histidine kinase CusS	NA	NA	NA	NA	NA
AZF31012.1|1667081_1667762_-	Copper-sensing two-component system response regulator CusR	NA	W8CYM9	Bacillus_phage	34.8	9.6e-29
AZF31013.1|1667917_1668430_+	Copper tolerance protein	NA	NA	NA	NA	NA
AZF31014.1|1668497_1669328_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	A0A2I7SAX1	Vibrio_phage	37.1	1.4e-37
AZF31015.1|1669464_1669731_-	Chromosome segregation ATPase	NA	NA	NA	NA	NA
AZF31016.1|1669842_1670451_-	Phosphonoacetaldehyde phosphonohydrolase-related protein	NA	NA	NA	NA	NA
AZF31017.1|1670647_1671337_+	Outer-membrane-phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
AZF31018.1|1671399_1671696_-	hypothetical protein	NA	NA	NA	NA	NA
AZF31019.1|1671972_1673154_+	Serine phosphatase RsbU, regulator of sigma subunit	NA	NA	NA	NA	NA
AZF31020.1|1673153_1673636_+	Serine-protein kinase RsbW	NA	NA	NA	NA	NA
AZF31021.1|1673834_1674761_-	Transaldolase	NA	A0A127KNC6	Cyanophage	34.8	5.3e-14
AZF31022.1|1674759_1674897_+	hypothetical protein	NA	NA	NA	NA	NA
AZF31023.1|1675042_1675981_-|tRNA	tRNA-dihydrouridine(20/20a) synthase	tRNA	NA	NA	NA	NA
AZF31024.1|1676195_1677308_+|integrase	integrase family protein	integrase	L7TP61	Pseudomonas_virus	63.5	3.8e-131
AZF31025.1|1677551_1678070_-	hypothetical protein	NA	A0A1B0VMC7	Pseudomonas_phage	52.6	2.1e-12
AZF31026.1|1678066_1678333_-	hypothetical protein	NA	NA	NA	NA	NA
AZF31027.1|1678471_1678783_-	hypothetical protein	NA	NA	NA	NA	NA
AZF31028.1|1678845_1679403_-	Phage protein	NA	A0A2H4J936	uncultured_Caudovirales_phage	53.8	2.7e-37
AZF31029.1|1679425_1681381_+|tail	Phage tail length tape-measure protein	tail	E5FFG5	Burkholderia_phage	46.6	5.3e-112
AZF31030.1|1681444_1683331_-|tail	Phage tail fiber protein	tail	A4PE45	Ralstonia_virus	54.5	3.9e-72
AZF31031.1|1683327_1684029_-|tail	Phage tail fiber	tail	A0A2H4JAU2	uncultured_Caudovirales_phage	72.3	8.0e-71
AZF31032.1|1684028_1684940_-|plate	Baseplate assembly protein J	plate	Q9ZXK8	Pseudomonas_virus	76.7	2.3e-126
AZF31033.1|1684936_1685281_-|plate	Phage baseplate assembly protein	plate	Q9ZXK9	Pseudomonas_virus	66.4	1.4e-36
AZF31034.1|1685277_1685856_-|plate	Baseplate assembly protein V	plate	Q9ZXL0	Pseudomonas_virus	60.3	1.9e-57
AZF31035.1|1685917_1686376_-|tail	Phage tail completion protein	tail	Q9ZXL2	Pseudomonas_virus	63.3	2.9e-45
AZF31036.1|1686365_1686848_-|tail	Phage tail protein	tail	Q9ZXL3	Pseudomonas_virus	65.4	1.1e-42
AZF31037.1|1686944_1687388_-	Phage endolysin	NA	Q9ZXL5	Pseudomonas_virus	55.1	1.6e-29
AZF31038.1|1687384_1687588_-	hypothetical protein	NA	NA	NA	NA	NA
AZF31039.1|1687584_1688430_-	Putative phage-encoded peptidoglycan binding protein	NA	Q9ZXL6	Pseudomonas_virus	70.5	1.5e-103
AZF31040.1|1688426_1688705_-|holin	Putative holin	holin	Q9ZXL7	Pseudomonas_virus	66.3	3.5e-22
AZF31041.1|1688706_1689060_-|holin	Phage holin or membrane protein	holin	Q9ZXL8	Pseudomonas_virus	58.1	2.2e-29
AZF31042.1|1689087_1689300_-|tail	Unclassified tail protein	tail	Q9ZXL9	Pseudomonas_virus	74.2	5.4e-23
AZF31043.1|1689299_1689761_-|head	Phage head completion protein	head	Q9ZXM1	Pseudomonas_virus	60.1	4.8e-48
AZF31044.1|1689861_1690581_-|terminase	Phage terminase, endonuclease subunit	terminase	A0A2H4J948	uncultured_Caudovirales_phage	58.5	2.2e-68
AZF31045.1|1690592_1691600_-|capsid	Phage major capsid protein	capsid	A4PE30	Ralstonia_virus	66.4	2.4e-124
AZF31046.1|1691645_1692524_-|capsid	Phage capsid scaffolding protein	capsid	A0A2H4J928	uncultured_Caudovirales_phage	61.2	6.0e-84
AZF31047.1|1692676_1694434_+|terminase	Phage terminase, ATPase subunit	terminase	Q9ZXM5	Pseudomonas_virus	81.2	4.2e-286
AZF31048.1|1694433_1695486_+|capsid	Phage-related capsid packaging protein	capsid	A0A2H4J922	uncultured_Caudovirales_phage	81.3	1.9e-161
AZF31049.1|1695642_1696437_+	Dam modification methylase	NA	C7BGE1	Burkholderia_phage	66.5	2.2e-101
AZF31050.1|1696433_1697114_-	Gifsy-2 prophage protein	NA	A0A2H4J991	uncultured_Caudovirales_phage	88.0	5.7e-122
1696839:1696855	attR	CCAGATCGAGCGGAAGA	NA	NA	NA	NA
>prophage 4
CP027732	Pseudomonas sp. R4-35-07 chromosome, complete genome	5836505	3462830	3472906	5836505	tRNA	uncultured_Caudovirales_phage(71.43%)	13	NA	NA
AZF32653.1|3462830_3463655_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	72.0	6.9e-106
AZF32654.1|3463722_3463959_-	hypothetical protein	NA	NA	NA	NA	NA
AZF32655.1|3463950_3464553_+	Inner membrane protein YohC	NA	NA	NA	NA	NA
AZF32656.1|3464682_3465177_+	Protein SprT	NA	NA	NA	NA	NA
AZF32657.1|3465270_3466446_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA	NA
AZF32658.1|3466605_3466998_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	83.7	2.6e-55
AZF32659.1|3466999_3467350_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	68.6	2.6e-38
AZF32660.1|3467349_3467628_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	57.6	2.9e-24
AZF32661.1|3467624_3467960_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	73.0	4.9e-42
AZF32662.1|3467956_3468958_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	86.0	7.7e-168
AZF32663.1|3469046_3470042_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZF32664.1|3470230_3471625_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZF32665.1|3471625_3472906_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.3	8.2e-98
>prophage 5
CP027732	Pseudomonas sp. R4-35-07 chromosome, complete genome	5836505	5443179	5454814	5836505		Bacillus_phage(33.33%)	10	NA	NA
AZF34453.1|5443179_5443425_-	hypothetical protein	NA	B5TK57	Pseudomonas_phage	53.3	2.5e-11
AZF34454.1|5443754_5444144_-	hypothetical protein	NA	NA	NA	NA	NA
AZF34455.1|5444151_5444535_-	hypothetical protein	NA	NA	NA	NA	NA
AZF34456.1|5444898_5445012_+	HigB toxin protein	NA	NA	NA	NA	NA
AZF34457.1|5445026_5445314_+	Antitoxin HigA	NA	A0A0M3LPV0	Mannheimia_phage	50.6	1.9e-18
AZF34458.1|5445443_5445899_-	chemotaxis protein, putative	NA	NA	NA	NA	NA
AZF34459.1|5445891_5451705_-	Signal transduction histidine kinase CheA	NA	W8CYM9	Bacillus_phage	35.9	6.3e-12
AZF34460.1|5451863_5453915_-	Methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.5	1.2e-18
AZF34461.1|5453911_5454436_-	type IV pili signal transduction protein PilI	NA	Q56AR1	Bacillus_thuringiensis_phage	35.6	2.6e-05
AZF34462.1|5454448_5454814_-	twitching motility protein PilH	NA	W8CYM9	Bacillus_phage	34.2	4.4e-12
