The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027729	Pseudomonas sp. R3-18-08 chromosome, complete genome	5810083	386526	417432	5810083	capsid,head,tail,terminase	Pseudomonas_phage(72.41%)	40	NA	NA
AZF13843.1|386526_387675_-	Mobile element protein	NA	V9IQN0	Stenotrophomonas_phage	40.5	4.1e-72
AZF13844.1|387671_387884_-	hypothetical protein	NA	NA	NA	NA	NA
AZF13845.1|388207_388450_-	hypothetical protein	NA	NA	NA	NA	NA
AZF13846.1|388442_389138_-	Phage protein	NA	M1PKJ5	Streptococcus_phage	36.7	7.0e-19
AZF13847.1|389134_389398_-	hypothetical protein	NA	NA	NA	NA	NA
AZF13848.1|389457_389775_-	hypothetical protein	NA	NA	NA	NA	NA
AZF13849.1|389822_390635_-	hypothetical protein	NA	A0A2H4J936	uncultured_Caudovirales_phage	30.6	3.9e-21
AZF13850.1|390661_393355_-	Phage protein	NA	A0A2H4J936	uncultured_Caudovirales_phage	55.2	7.8e-300
AZF13851.1|393351_393591_-	hypothetical protein	NA	NA	NA	NA	NA
AZF13852.1|393666_394032_-	hypothetical protein	NA	NA	NA	NA	NA
AZF13853.1|394028_394538_-	Phage protein	NA	A0A2H4JG61	uncultured_Caudovirales_phage	55.0	7.4e-42
AZF13854.1|394537_394741_-	hypothetical protein	NA	A0A2H4JE67	uncultured_Caudovirales_phage	54.0	3.0e-10
AZF13855.1|394815_395178_+	hypothetical protein	NA	A0A2H4JFL3	uncultured_Caudovirales_phage	41.0	8.4e-16
AZF13856.1|395280_395457_+	hypothetical protein	NA	NA	NA	NA	NA
AZF13857.1|395854_396610_-|capsid	Phage-related capsid packaging protein	capsid	A0A0U4B0L9	Pseudomonas_phage	76.6	5.5e-102
AZF13858.1|396644_398711_-|terminase	Phage terminase, ATPase subunit	terminase	A0A0U4JIZ9	Pseudomonas_phage	68.6	1.0e-267
AZF13859.1|398874_399792_+|capsid	Phage capsid scaffolding protein	capsid	A0A0U4JVV6	Pseudomonas_phage	57.6	4.3e-56
AZF13860.1|399793_400816_+|capsid	Phage capsid protein	capsid	A0A0U4K5I9	Pseudomonas_phage	67.6	3.3e-126
AZF13861.1|400812_401541_+|terminase	putative terminase, endonuclease subunit	terminase	A0A0U4JEJ1	Pseudomonas_phage	61.9	1.1e-70
AZF13862.1|401638_402109_+|head	putative head completion/stabilization protein	head	A0A0U4J933	Pseudomonas_phage	57.7	6.0e-38
AZF13863.1|402105_402555_+	hypothetical protein	NA	A0A0U4IBS7	Pseudomonas_phage	63.9	1.1e-46
AZF13864.1|402544_403225_+	hypothetical protein	NA	A0A0U4ISN1	Pseudomonas_phage	60.6	1.6e-63
AZF13865.1|403236_404358_+	Phage protein	NA	A0A0U4KLE6	Pseudomonas_phage	68.4	2.0e-140
AZF13866.1|404364_404814_+	hypothetical protein	NA	A0A0U3TH58	Pseudomonas_phage	75.7	2.4e-60
AZF13867.1|404813_405032_+	putative Zinc-finger containing protein	NA	A0A0U4IIN4	Pseudomonas_phage	58.5	6.8e-13
AZF13868.1|405028_405235_+	hypothetical protein	NA	NA	NA	NA	NA
AZF13869.1|405231_405765_+	putative phage lysozyme	NA	NA	NA	NA	NA
AZF13870.1|405764_406217_+	Endopeptidase	NA	A0A0U4JXC2	Pseudomonas_phage	52.1	1.4e-28
AZF13871.1|406252_406540_+	hypothetical protein	NA	A0A0U4B0P2	Pseudomonas_phage	67.4	3.4e-28
AZF13872.1|406563_406704_+	hypothetical protein	NA	A0A0U4B0S4	Pseudomonas_phage	82.6	9.4e-16
AZF13873.1|406710_409023_+|tail	Phage-related tail protein	tail	A0A0U4IJ81	Pseudomonas_phage	42.9	7.5e-150
AZF13874.1|409019_409337_+	hypothetical protein	NA	A0A0U4B0N5	Pseudomonas_phage	78.4	3.2e-35
AZF13875.1|409333_410506_+	Phage protein	NA	A0A0U4JJ14	Pseudomonas_phage	74.0	1.4e-165
AZF13876.1|410502_411027_+	hypothetical protein	NA	A0A0U4JVX3	Pseudomonas_phage	81.0	2.6e-82
AZF13877.1|411036_413673_+|tail	Phage tail fiber protein	tail	A0A0U4K5K2	Pseudomonas_phage	64.9	2.9e-105
AZF13878.1|413834_414314_+	hypothetical protein	NA	NA	NA	NA	NA
AZF13879.1|414336_415239_+	hypothetical protein	NA	NA	NA	NA	NA
AZF13880.1|415235_415787_+	hypothetical protein	NA	A0A0U4J942	Pseudomonas_phage	63.5	1.4e-54
AZF13881.1|415783_416488_+	hypothetical protein	NA	A0A1D9CA29	Salinivibrio_phage	38.3	1.1e-40
AZF13882.1|416460_417432_+	hypothetical protein	NA	A0A0U4IBV2	Pseudomonas_phage	68.9	7.1e-126
>prophage 2
CP027729	Pseudomonas sp. R3-18-08 chromosome, complete genome	5810083	1305691	1345991	5810083	plate,tRNA,tail	uncultured_Caudovirales_phage(33.33%)	50	NA	NA
AZF14664.1|1305691_1306162_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
AZF14665.1|1306301_1307345_-	Ferric iron ABC transporter, ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	37.1	3.3e-20
AZF14666.1|1307341_1308265_-	Ornithine carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	27.4	1.2e-18
AZF14667.1|1308694_1310803_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA	NA
AZF14668.1|1310902_1311241_+	Glutaredoxin-related protein	NA	NA	NA	NA	NA
AZF14669.1|1311430_1311901_-	Bacterioferritin	NA	NA	NA	NA	NA
AZF14670.1|1312101_1312320_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZF14671.1|1312565_1313168_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA	NA
AZF14672.1|1313232_1313907_-	Ribonuclease T	NA	NA	NA	NA	NA
AZF14673.1|1313903_1314950_-	Dihydroorotase	NA	NA	NA	NA	NA
AZF14674.1|1315106_1316015_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA	NA
AZF14675.1|1316144_1317362_+	Argininosuccinate synthase	NA	NA	NA	NA	NA
AZF14676.1|1317656_1317770_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14677.1|1317989_1318622_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA	NA
AZF14678.1|1318709_1318892_-	hypothetical protein	NA	NA	NA	NA	NA
AZF14679.1|1318998_1319637_-	Endonuclease III	NA	NA	NA	NA	NA
AZF14680.1|1319706_1320681_-	Electron transport complex protein RnfB	NA	NA	NA	NA	NA
AZF14681.1|1320764_1322816_-|tRNA	Methionyl-tRNA synthetase	tRNA	NA	NA	NA	NA
AZF14682.1|1322988_1324083_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA	NA
AZF14683.1|1324538_1324862_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZF14684.1|1325004_1327596_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	21.5	2.1e-28
AZF14685.1|1327779_1328151_-	hypothetical protein	NA	NA	NA	NA	NA
AZF14686.1|1328143_1328632_-	GepA protein	NA	D0UIM3	Aggregatibacter_phage	44.5	6.4e-27
AZF14687.1|1328894_1329629_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	87.3	8.3e-119
AZF14688.1|1329672_1331004_-	Transposase	NA	NA	NA	NA	NA
AZF14689.1|1331069_1331195_-	hypothetical protein	NA	NA	NA	NA	NA
AZF14690.1|1331250_1331370_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14691.1|1331653_1331992_+	Holin	NA	B5TK61	Pseudomonas_phage	81.8	2.8e-45
AZF14692.1|1332008_1332524_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14693.1|1332527_1333136_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	52.3	6.5e-45
AZF14694.1|1333148_1333481_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	69.1	1.0e-36
AZF14695.1|1333477_1334473_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	64.4	1.2e-112
AZF14696.1|1334469_1335108_+|tail	Phage tail fiber	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	52.5	2.5e-39
AZF14697.1|1335104_1335635_+|tail	Phage tail fiber protein	tail	B0ZSG1	Halomonas_phage	55.6	1.2e-47
AZF14698.1|1335688_1336441_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14699.1|1336450_1336687_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14700.1|1336775_1336949_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14701.1|1336951_1338118_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	57.0	1.2e-124
AZF14702.1|1338117_1338624_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	35.1	3.8e-22
AZF14703.1|1338676_1339258_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	38.3	1.0e-26
AZF14704.1|1339254_1339380_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14705.1|1339386_1339503_+	hypothetical protein	NA	NA	NA	NA	NA
AZF14706.1|1339553_1341605_+|tail	Phage tail length tape-measure protein	tail	NA	NA	NA	NA
AZF14707.1|1341604_1341988_+|tail	Unclassified tail protein	tail	B0ZSH2	Halomonas_phage	55.9	6.8e-32
AZF14708.1|1341980_1342193_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	64.3	1.2e-17
AZF14709.1|1342202_1343204_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	54.8	3.4e-99
AZF14710.1|1343227_1343785_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	71.0	1.8e-73
AZF14711.1|1343772_1344267_+	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	58.1	2.5e-34
AZF14712.1|1344348_1344849_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	83.7	9.7e-71
AZF14713.1|1344932_1345991_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	62.4	2.4e-111
>prophage 3
CP027729	Pseudomonas sp. R3-18-08 chromosome, complete genome	5810083	1449818	1454782	5810083		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AZF14814.1|1449818_1450568_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	49.4	2.1e-61
AZF14815.1|1450567_1451245_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	53.1	3.1e-43
AZF14816.1|1451455_1452292_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	8.2e-06
AZF14817.1|1452397_1453405_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	36.2	1.3e-34
AZF14818.1|1453618_1453828_-	Cold shock protein of CSP family	NA	Q9AZD3	Lactococcus_phage	66.7	2.2e-16
AZF14819.1|1454215_1454782_+	Deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	73.3	6.2e-74
>prophage 4
CP027729	Pseudomonas sp. R3-18-08 chromosome, complete genome	5810083	3457834	3467835	5810083	tRNA	uncultured_Caudovirales_phage(71.43%)	12	NA	NA
AZF16642.1|3457834_3458659_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	71.6	2.0e-105
AZF16643.1|3458954_3459557_+	Inner membrane protein YohC	NA	NA	NA	NA	NA
AZF16644.1|3459685_3460180_+	Protein SprT	NA	NA	NA	NA	NA
AZF16645.1|3460273_3461449_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA	NA
AZF16646.1|3461608_3462001_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	82.9	3.4e-55
AZF16647.1|3462002_3462353_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	71.1	5.2e-39
AZF16648.1|3462352_3462631_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	57.6	2.9e-24
AZF16649.1|3462627_3462963_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	73.0	1.5e-43
AZF16650.1|3462959_3463961_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	86.3	1.6e-168
AZF16651.1|3464049_3465045_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZF16652.1|3465159_3466554_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZF16653.1|3466554_3467835_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.3	8.2e-98
>prophage 5
CP027729	Pseudomonas sp. R3-18-08 chromosome, complete genome	5810083	5407029	5417862	5810083		Mannheimia_phage(28.57%)	9	NA	NA
AZF18417.1|5407029_5407269_-	hypothetical protein	NA	B5TK57	Pseudomonas_phage	54.5	1.2e-10
AZF18418.1|5407778_5408057_+	HigB toxin protein	NA	A0A0M3LQB1	Mannheimia_phage	39.1	9.3e-15
AZF18419.1|5408071_5408359_+	Antitoxin HigA	NA	A0A0M3LPV0	Mannheimia_phage	50.6	1.9e-18
AZF18420.1|5408488_5408944_-	chemotaxis protein, putative	NA	NA	NA	NA	NA
AZF18421.1|5408936_5414750_-	Signal transduction histidine kinase CheA	NA	W8CYM9	Bacillus_phage	36.9	2.8e-12
AZF18422.1|5414768_5414897_-	hypothetical protein	NA	NA	NA	NA	NA
AZF18423.1|5414911_5416963_-	Methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.5	2.1e-18
AZF18424.1|5416959_5417484_-	type IV pili signal transduction protein PilI	NA	Q56AR1	Bacillus_thuringiensis_phage	35.6	2.6e-05
AZF18425.1|5417496_5417862_-	twitching motility protein PilH	NA	W8CYM9	Bacillus_phage	34.2	4.4e-12
