The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027752	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38 chromosome, complete genome	6947716	409767	420329	6947716	tail	Pseudomonas_phage(83.33%)	18	NA	NA
AZE39737.1|409767_410352_-|tail	Phage tail assembly protein I	tail	A0A2H4JG90	uncultured_Caudovirales_phage	61.3	2.5e-57
AZE39738.1|410355_410706_-	hypothetical protein	NA	A0A1B0VML3	Pseudomonas_phage	64.8	1.3e-34
AZE39739.1|410819_411425_-	hypothetical protein	NA	A0A1B0VMK2	Pseudomonas_phage	54.2	3.4e-54
AZE39740.1|411421_411736_-	hypothetical protein	NA	A0A1B0VML7	Pseudomonas_phage	76.7	2.3e-38
AZE39741.1|411732_411927_-	hypothetical protein	NA	NA	NA	NA	NA
AZE39742.1|412072_413875_-	DNA primase, phage-associated	NA	A0A1B0VP75	Pseudomonas_phage	95.7	0.0e+00
AZE39743.1|413861_414743_-	DNA primase, phage-associated	NA	A0A1B0VML8	Pseudomonas_phage	87.7	3.7e-142
AZE39744.1|414739_414958_-	hypothetical protein	NA	A0A1B0VRK9	Pseudomonas_phage	84.7	1.2e-28
AZE39745.1|414959_415247_-	hypothetical protein	NA	A0A1B0VMJ4	Pseudomonas_phage	90.8	5.6e-39
AZE39746.1|415250_415580_-	hypothetical protein	NA	NA	NA	NA	NA
AZE39747.1|415576_415822_-	hypothetical protein	NA	NA	NA	NA	NA
AZE39748.1|415818_416130_-	hypothetical protein	NA	NA	NA	NA	NA
AZE39749.1|416126_416288_-	hypothetical protein	NA	A0A1B0VP73	Pseudomonas_phage	76.0	5.6e-12
AZE39750.1|416605_417280_-	hypothetical protein	NA	I6S1R0	Salmonella_phage	54.4	4.7e-28
AZE39751.1|417276_417579_-	hypothetical protein	NA	NA	NA	NA	NA
AZE39752.1|417580_417832_-	Prophage CP4-57 regulatory	NA	A0A1B0VNF0	Pseudomonas_phage	56.7	3.9e-12
AZE39753.1|417993_419004_-	hypothetical protein	NA	NA	NA	NA	NA
AZE39754.1|419126_420329_-	Integrase	NA	A0A1B0VMI6	Pseudomonas_phage	92.7	4.8e-217
>prophage 2
CP027752	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38 chromosome, complete genome	6947716	1331448	1422286	6947716	protease,tail,tRNA,plate	Pseudomonas_phage(42.31%)	96	NA	NA
AZE40582.1|1331448_1332801_+|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	protease	NA	NA	NA	NA
AZE40583.1|1332875_1335263_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA	NA
AZE40584.1|1335308_1335812_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA	NA
AZE40585.1|1335815_1336871_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZE40586.1|1336980_1337421_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZE40587.1|1337417_1338194_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZE40588.1|1338196_1339327_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZE40589.1|1339338_1339971_+	Ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	38.9	1.7e-27
AZE40590.1|1340040_1343565_+	DNA polymerase III alpha subunit	NA	A0A2L1IZ23	Streptomyces_phage	38.0	1.4e-195
AZE40591.1|1343705_1344653_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA	NA
AZE40592.1|1344772_1346101_+|tRNA	tRNA(Ile)-lysidine synthetase	tRNA	NA	NA	NA	NA
AZE40593.1|1346146_1346290_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40594.1|1346375_1348007_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.5	6.9e-158
AZE40595.1|1348012_1348858_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.8	9.4e-50
AZE40596.1|1349015_1350305_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	9.0e-137
AZE40597.1|1350477_1350756_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA	NA
AZE40598.1|1350752_1351460_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AZE40599.1|1351629_1352526_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA	NA
AZE40600.1|1352632_1353745_+	S-(hydroxymethyl)glutathione dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.2	8.3e-30
AZE40601.1|1353833_1354679_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AZE40602.1|1354731_1355205_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AZE40603.1|1355201_1356260_+|tRNA	tRNA pseudouridine(13) synthase	tRNA	NA	NA	NA	NA
AZE40604.1|1356247_1356997_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.6	1.4e-68
AZE40605.1|1356996_1357674_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.0	6.8e-43
AZE40606.1|1357883_1358717_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	6.3e-06
AZE40607.1|1358823_1359828_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	35.8	5.0e-34
AZE40608.1|1360329_1360653_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZE40609.1|1360795_1363375_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.5	3.1e-27
AZE40610.1|1363571_1364297_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	91.4	1.3e-124
AZE40611.1|1365134_1365281_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40612.1|1365641_1366223_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40613.1|1366325_1366673_+	Holin	NA	B5TK61	Pseudomonas_phage	87.7	1.0e-50
AZE40614.1|1366839_1367604_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	26.3	2.0e-06
AZE40615.1|1367830_1368355_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40616.1|1368358_1368967_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	59.1	1.8e-47
AZE40617.1|1368980_1369313_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	69.1	2.1e-37
AZE40618.1|1369309_1370305_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	62.3	8.9e-108
AZE40619.1|1370301_1371036_+|tail	Phage tail fiber	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	51.4	3.4e-40
AZE40620.1|1371032_1371563_+|tail	Phage tail fiber	tail	A2I2X8	Vibrio_virus	61.9	3.4e-50
AZE40621.1|1372142_1372472_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40622.1|1372474_1372777_+	Phage protein	NA	Q8H9M8	Vibrio_phage	64.6	1.8e-11
AZE40623.1|1372863_1373085_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40624.1|1373087_1374254_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	57.5	1.4e-125
AZE40625.1|1374253_1374760_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	35.7	2.6e-23
AZE40626.1|1374886_1375498_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	36.4	1.5e-25
AZE40627.1|1375494_1375620_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40628.1|1375626_1377834_+	Phage protein	NA	A0A2H4JAA5	uncultured_Caudovirales_phage	49.3	7.2e-09
AZE40629.1|1377833_1378217_+|tail	Unclassified tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	59.8	4.0e-40
AZE40630.1|1378209_1378422_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	61.4	6.9e-18
AZE40631.1|1378431_1379448_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	56.6	1.0e-106
AZE40632.1|1379590_1380175_+	hypothetical protein	NA	B5TK65	Pseudomonas_phage	72.5	3.1e-76
AZE40633.1|1380171_1380354_+	Mu-like prophage FluMu protein GP38	NA	B5TK66	Pseudomonas_phage	93.3	6.5e-25
AZE40634.1|1380353_1381850_+|tail	Bacteriophage tail sheath protein	tail	B5TK67	Pseudomonas_phage	91.0	2.0e-257
AZE40635.1|1381916_1382264_+|tail	Phage tail tube protein	tail	B5TK68	Pseudomonas_phage	93.9	2.9e-58
AZE40636.1|1382260_1382557_+|tail	Phage small tail protein E	tail	B5TK69	Pseudomonas_phage	94.9	2.3e-43
AZE40637.1|1382687_1384763_+|tail	Phage tail length tape-measure protein	tail	B5TK70	Pseudomonas_phage	48.2	1.8e-38
AZE40638.1|1384749_1385988_+|tail	Phage tail/DNA circulation protein	tail	B5TK71	Pseudomonas_phage	75.7	5.7e-181
AZE40639.1|1385991_1387032_+|tail	Prophage tail protein	tail	B5TK72	Pseudomonas_phage	82.7	3.8e-162
AZE40640.1|1387148_1387658_+|plate	Prophage baseplate assembly protein V	plate	B5TK73	Pseudomonas_phage	88.8	2.2e-78
AZE40641.1|1387657_1388056_+	Bacteriophage protein GP46	NA	B5TK74	Pseudomonas_phage	89.4	1.7e-65
AZE40642.1|1388045_1389086_+	Phage FluMu protein gp47	NA	B5TK75	Pseudomonas_phage	87.3	3.0e-167
AZE40643.1|1389073_1389673_+|tail	Prophage tail protein	tail	B5TK76	Pseudomonas_phage	91.0	2.5e-105
AZE40644.1|1389684_1390539_+|tail	Prophage tail fiber protein	tail	B5TK77	Pseudomonas_phage	76.4	1.5e-23
AZE40645.1|1390543_1391185_+|tail	putative tail fiber assembly-like protein	tail	B5TK78	Pseudomonas_phage	51.9	1.4e-37
AZE40646.1|1391316_1392237_+|tail	Prophage tail fiber protein	tail	B5TK77	Pseudomonas_phage	61.1	7.4e-24
AZE40647.1|1392236_1392716_+	hypothetical protein	NA	A0A291LAV4	Bordetella_phage	52.1	1.3e-11
AZE40648.1|1392875_1393778_+|tail	Prophage tail fiber protein	tail	B5TK81	Pseudomonas_phage	37.6	1.8e-35
AZE40649.1|1394329_1395070_+|tail	Prophage tail fiber protein	tail	B5TK77	Pseudomonas_phage	65.8	2.1e-21
AZE40650.1|1395072_1395504_+	hypothetical protein	NA	Q9ZXK5	Pseudomonas_virus	38.4	2.2e-23
AZE40651.1|1395549_1396113_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	83.3	3.7e-87
AZE40652.1|1396094_1396631_+	hypothetical protein	NA	B5TK84	Pseudomonas_phage	71.3	6.3e-60
AZE40653.1|1396713_1397214_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	86.1	1.0e-72
AZE40654.1|1397297_1398350_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	60.9	4.4e-113
AZE40655.1|1398358_1398826_+	Regulatory protein RecX	NA	NA	NA	NA	NA
AZE40656.1|1398871_1399987_-	Decarboxylase family protein	NA	NA	NA	NA	NA
AZE40657.1|1400470_1400665_+	hypothetical protein	NA	NA	NA	NA	NA
AZE40658.1|1400666_1401089_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA	NA
AZE40659.1|1401278_1401989_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA	NA
AZE40660.1|1402323_1402974_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
AZE40661.1|1403050_1403413_+	Diacylglycerol kinase	NA	NA	NA	NA	NA
AZE40662.1|1403409_1404336_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZE40663.1|1404469_1405249_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AZE40664.1|1405321_1406017_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA	NA
AZE40665.1|1406103_1406874_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA	NA
AZE40666.1|1407007_1407469_-	Uncharacterized protein YehS	NA	Q9EYF4	Enterobacteria_phage	51.3	8.5e-37
AZE40667.1|1407535_1408246_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA	NA
AZE40668.1|1408328_1408802_-	Acetyltransferase	NA	NA	NA	NA	NA
AZE40669.1|1408908_1410246_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA	NA
AZE40670.1|1410346_1410616_-	hypothetical protein	NA	NA	NA	NA	NA
AZE40671.1|1410637_1412479_+	Kup system potassium uptake protein	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	35.0	8.0e-78
AZE40672.1|1412678_1412954_-	hypothetical protein	NA	NA	NA	NA	NA
AZE40673.1|1413451_1414747_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA	NA
AZE40674.1|1414746_1417395_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA	NA
AZE40675.1|1418333_1419398_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZE40676.1|1419599_1420553_-	putative lipoprotein	NA	NA	NA	NA	NA
AZE40677.1|1420570_1422286_-|tRNA	Prolyl-tRNA synthetase, bacterial type	tRNA	NA	NA	NA	NA
>prophage 3
CP027752	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38 chromosome, complete genome	6947716	2374081	2380978	6947716		uncultured_Caudovirales_phage(42.86%)	7	NA	NA
AZE41527.1|2374081_2374951_-	Integrase	NA	A0A2H4J1K3	uncultured_Caudovirales_phage	91.3	2.0e-151
AZE41528.1|2375518_2376157_+	hypothetical protein	NA	A0A059VFX9	Pseudomonas_phage	60.1	4.0e-61
AZE41529.1|2376336_2377434_+	hypothetical protein	NA	W6MVL2	Pseudomonas_phage	29.5	2.9e-27
AZE41530.1|2377617_2377956_+	Cell wall hydrolase	NA	A0A2D1GNI1	Pseudomonas_phage	71.4	1.9e-46
AZE41531.1|2377955_2378474_+	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	64.5	4.2e-53
AZE41532.1|2378477_2379185_-	Gifsy-2 prophage protein	NA	A0A2H4J991	uncultured_Caudovirales_phage	70.0	8.3e-92
AZE41533.1|2379580_2380978_-	Transposase	NA	W5R8L2	Staphylococcus_phage	32.5	2.2e-40
>prophage 4
CP027752	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38 chromosome, complete genome	6947716	3923980	3927112	6947716	tail,integrase	uncultured_Caudovirales_phage(83.33%)	6	3915438:3915452	3927225:3927239
3915438:3915452	attL	CGGAATCGAACCGGC	NA	NA	NA	NA
AZE42955.1|3923980_3924532_-	Phage endolysin	NA	A0A2H4JHX4	uncultured_Caudovirales_phage	68.1	5.5e-67
AZE42956.1|3924555_3925608_-|tail	Phage tail protein D	tail	A0A2H4JBF6	uncultured_Caudovirales_phage	75.5	1.4e-148
AZE42957.1|3925665_3925872_-|tail	Phage tail protein	tail	E5E3W5	Burkholderia_phage	46.0	6.5e-05
AZE42958.1|3925846_3926335_-	Phage protein U	NA	A0A2H4J875	uncultured_Caudovirales_phage	65.8	1.7e-59
AZE42959.1|3926415_3926793_+|integrase	Phage-related integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	70.7	1.2e-41
AZE42960.1|3926815_3927112_+	Integrase	NA	A0A2H4JDJ8	uncultured_Caudovirales_phage	59.4	3.5e-20
3927225:3927239	attR	CGGAATCGAACCGGC	NA	NA	NA	NA
>prophage 5
CP027752	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38 chromosome, complete genome	6947716	4365076	4371335	6947716	tRNA	uncultured_Caudovirales_phage(83.33%)	8	NA	NA
AZE43336.1|4365076_4365469_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	84.6	6.7e-59
AZE43337.1|4365472_4365835_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	75.0	2.5e-44
AZE43338.1|4365834_4366134_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	69.7	1.1e-32
AZE43339.1|4366130_4366466_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	82.0	1.9e-46
AZE43340.1|4366462_4367464_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	84.1	1.8e-164
AZE43341.1|4367553_4368561_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZE43342.1|4368659_4370054_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZE43343.1|4370054_4371335_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.1	2.1e-101
