The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027721	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36 chromosome, complete genome	6934077	1353106	1445993	6934077	tail,plate,protease,tRNA	Pseudomonas_phage(40.38%)	95	NA	NA
AZD97117.1|1353106_1354459_+|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	protease	NA	NA	NA	NA
AZD97118.1|1354533_1356921_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA	NA
AZD97119.1|1356966_1357470_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA	NA
AZD97120.1|1357473_1358529_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZD97121.1|1358638_1359079_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZD97122.1|1359075_1359852_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZD97123.1|1359854_1360985_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZD97124.1|1360996_1361629_+	Ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	38.9	1.7e-27
AZD97125.1|1361698_1365223_+	DNA polymerase III alpha subunit	NA	A0A2L1IZ23	Streptomyces_phage	38.0	1.4e-195
AZD97126.1|1365363_1366311_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA	NA
AZD97127.1|1366430_1367759_+|tRNA	tRNA(Ile)-lysidine synthetase	tRNA	NA	NA	NA	NA
AZD97128.1|1367804_1367948_+	hypothetical protein	NA	NA	NA	NA	NA
AZD97129.1|1368033_1369665_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.5	6.9e-158
AZD97130.1|1369670_1370516_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.8	1.2e-49
AZD97131.1|1370673_1371963_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	9.0e-137
AZD97132.1|1372135_1372414_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA	NA
AZD97133.1|1372410_1373118_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AZD97134.1|1373283_1374180_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA	NA
AZD97135.1|1374286_1375399_+	S-(hydroxymethyl)glutathione dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.2	8.3e-30
AZD97136.1|1375487_1376333_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AZD97137.1|1376385_1376859_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AZD97138.1|1376855_1377914_+|tRNA	tRNA pseudouridine(13) synthase	tRNA	NA	NA	NA	NA
AZD97139.1|1377901_1378651_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.6	1.4e-68
AZD97140.1|1378650_1379328_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.0	6.8e-43
AZD97141.1|1379618_1380371_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	5.7e-06
AZD97142.1|1380477_1381482_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	35.8	5.0e-34
AZD97143.1|1381886_1382837_+	Mobile element protein	NA	A4PE56	Ralstonia_virus	57.9	4.0e-97
AZD97144.1|1383299_1383623_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZD97145.1|1383765_1386345_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	22.0	1.8e-27
AZD97146.1|1386541_1387267_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	91.4	1.3e-124
AZD97147.1|1388007_1388619_+	hypothetical protein	NA	NA	NA	NA	NA
AZD97148.1|1388691_1389039_+	Holin	NA	B5TK61	Pseudomonas_phage	87.7	1.0e-50
AZD97149.1|1389205_1389970_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	26.8	8.9e-07
AZD97150.1|1390192_1390717_+	hypothetical protein	NA	NA	NA	NA	NA
AZD97151.1|1390720_1391329_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	59.7	8.2e-48
AZD97152.1|1391342_1391675_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	68.2	2.3e-36
AZD97153.1|1391671_1392667_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	62.9	1.8e-108
AZD97154.1|1392663_1393299_+	Tail protein I	NA	A0A2H4JDK0	uncultured_Caudovirales_phage	53.7	9.9e-44
AZD97155.1|1393299_1394862_+|tail	Prophage long tail fiber protein	tail	A0A1I9KF43	Aeromonas_phage	40.9	1.2e-29
AZD97156.1|1395397_1395619_+	hypothetical protein	NA	NA	NA	NA	NA
AZD97157.1|1395621_1396788_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	57.2	1.9e-125
AZD97158.1|1396787_1397294_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	36.9	2.1e-25
AZD97159.1|1397421_1398003_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	39.4	1.5e-27
AZD97160.1|1397999_1398125_+	hypothetical protein	NA	NA	NA	NA	NA
AZD97161.1|1398131_1400402_+|tail	Phage tail length tape-measure protein	tail	A2I2Y1	Vibrio_virus	35.1	1.3e-34
AZD97162.1|1400401_1400785_+|tail	Unclassified tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	53.5	4.7e-33
AZD97163.1|1400777_1400990_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	68.6	3.9e-21
AZD97164.1|1400999_1402019_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	56.8	1.2e-104
AZD97165.1|1402199_1402784_+	hypothetical protein	NA	B5TK65	Pseudomonas_phage	72.0	3.1e-76
AZD97166.1|1402780_1402963_+	Mu-like prophage FluMu protein GP38	NA	B5TK66	Pseudomonas_phage	93.3	6.5e-25
AZD97167.1|1402962_1404459_+|tail	Bacteriophage tail sheath protein	tail	B5TK67	Pseudomonas_phage	90.8	7.8e-257
AZD97168.1|1404525_1404873_+|tail	Phage tail tube protein	tail	B5TK68	Pseudomonas_phage	93.9	2.9e-58
AZD97169.1|1404869_1405166_+|tail	Phage small tail protein E	tail	B5TK69	Pseudomonas_phage	94.9	2.3e-43
AZD97170.1|1405296_1407051_+|tail	Phage tail length tape-measure protein	tail	B5TK70	Pseudomonas_phage	54.6	8.5e-45
AZD97171.1|1407037_1408276_+|tail	Phage tail/DNA circulation protein	tail	B5TK71	Pseudomonas_phage	75.5	1.7e-180
AZD97172.1|1408279_1409320_+|tail	Prophage tail protein	tail	B5TK72	Pseudomonas_phage	82.7	3.8e-162
AZD97173.1|1409384_1409894_+|plate	Prophage baseplate assembly protein V	plate	B5TK73	Pseudomonas_phage	89.3	5.8e-79
AZD97174.1|1409893_1410292_+	Bacteriophage protein GP46	NA	B5TK74	Pseudomonas_phage	89.4	1.7e-65
AZD97175.1|1410281_1411322_+	Phage FluMu protein gp47	NA	B5TK75	Pseudomonas_phage	87.3	3.0e-167
AZD97176.1|1411309_1411909_+|tail	Prophage tail protein	tail	B5TK76	Pseudomonas_phage	91.5	8.5e-106
AZD97177.1|1411920_1412778_+|tail	Prophage tail fiber protein	tail	B5TK77	Pseudomonas_phage	76.4	1.5e-23
AZD97178.1|1412782_1413424_+	hypothetical protein	NA	B5TK78	Pseudomonas_phage	62.1	4.8e-38
AZD97179.1|1413807_1415361_+|tail	Prophage tail fiber protein	tail	A4PE45	Ralstonia_virus	53.0	1.2e-37
AZD97180.1|1415362_1415833_+	hypothetical protein	NA	A0A2H4EXG4	Aeromonas_phage	35.0	3.2e-07
AZD97181.1|1415977_1416157_-	hypothetical protein	NA	NA	NA	NA	NA
AZD97182.1|1416225_1417308_+|tail	Prophage tail fiber protein	tail	B5TK79	Pseudomonas_phage	56.6	1.4e-111
AZD97183.1|1417315_1417918_+	Tail fiber assembly protein	NA	B5TK80	Pseudomonas_phage	49.2	6.9e-47
AZD97184.1|1417939_1418503_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	84.4	8.9e-89
AZD97185.1|1418484_1419021_+	hypothetical protein	NA	B5TK84	Pseudomonas_phage	72.5	5.2e-62
AZD97186.1|1419103_1419604_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	86.7	6.1e-73
AZD97187.1|1419687_1420740_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	60.9	4.4e-113
AZD97188.1|1420748_1421216_+	Regulatory protein RecX	NA	NA	NA	NA	NA
AZD97189.1|1421261_1422377_-	Decarboxylase family protein	NA	NA	NA	NA	NA
AZD97190.1|1422860_1423055_+	hypothetical protein	NA	NA	NA	NA	NA
AZD97191.1|1423056_1423479_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA	NA
AZD97192.1|1423668_1424379_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA	NA
AZD97193.1|1424713_1425364_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
AZD97194.1|1425440_1425803_+	Diacylglycerol kinase	NA	NA	NA	NA	NA
AZD97195.1|1425799_1426726_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZD97196.1|1426859_1427639_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AZD97197.1|1427711_1428407_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA	NA
AZD97198.1|1428493_1429264_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA	NA
AZD97199.1|1429397_1429859_-	Uncharacterized protein YehS	NA	Q9EYF4	Enterobacteria_phage	51.3	8.5e-37
AZD97200.1|1429925_1430636_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA	NA
AZD97201.1|1430718_1431192_-	Acetyltransferase	NA	NA	NA	NA	NA
AZD97202.1|1431298_1432636_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA	NA
AZD97203.1|1432736_1433006_-	hypothetical protein	NA	NA	NA	NA	NA
AZD97204.1|1433027_1434869_+	Kup system potassium uptake protein	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	35.0	8.0e-78
AZD97205.1|1434930_1435881_-	Mobile element protein	NA	A4PE56	Ralstonia_virus	57.9	4.0e-97
AZD97206.1|1436384_1436660_-	hypothetical protein	NA	NA	NA	NA	NA
AZD97207.1|1437157_1438453_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA	NA
AZD97208.1|1438452_1441101_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA	NA
AZD97209.1|1442039_1443104_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZD97210.1|1443306_1444260_-	putative lipoprotein	NA	NA	NA	NA	NA
AZD97211.1|1444277_1445993_-|tRNA	Prolyl-tRNA synthetase, bacterial type	tRNA	NA	NA	NA	NA
>prophage 2
CP027721	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36 chromosome, complete genome	6934077	3921967	3926586	6934077	integrase,tail	uncultured_Caudovirales_phage(75.0%)	8	3915002:3915016	3926699:3926713
3915002:3915016	attL	CGGAATCGAACCGGC	NA	NA	NA	NA
AZD99452.1|3921967_3922762_-	Dam modification methylase	NA	C7BGE1	Burkholderia_phage	66.5	1.5e-102
AZD99453.1|3922913_3923456_-	hypothetical protein	NA	B5TK84	Pseudomonas_phage	47.8	6.5e-28
AZD99454.1|3923455_3924007_-	Phage endolysin	NA	A0A2H4JHX4	uncultured_Caudovirales_phage	67.6	1.6e-66
AZD99455.1|3924030_3925083_-|tail	Phage tail protein D	tail	A0A2H4JBF6	uncultured_Caudovirales_phage	75.2	1.1e-148
AZD99456.1|3925139_3925346_-|tail	Phage tail protein	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	67.2	1.6e-19
AZD99457.1|3925320_3925809_-	Phage protein U	NA	A0A2H4J875	uncultured_Caudovirales_phage	65.8	1.4e-58
AZD99458.1|3925889_3926267_+|integrase	Phage-related integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	69.8	6.0e-41
AZD99459.1|3926289_3926586_+	Integrase	NA	A0A2H4JDJ8	uncultured_Caudovirales_phage	59.4	3.5e-20
3926699:3926713	attR	CGGAATCGAACCGGC	NA	NA	NA	NA
>prophage 3
CP027721	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36 chromosome, complete genome	6934077	4352198	4358457	6934077	tRNA	uncultured_Caudovirales_phage(83.33%)	8	NA	NA
AZD99817.1|4352198_4352591_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	84.6	6.7e-59
AZD99818.1|4352594_4352957_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	75.0	1.9e-44
AZD99819.1|4352956_4353256_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	69.7	1.1e-32
AZD99820.1|4353252_4353588_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	82.0	1.9e-46
AZD99821.1|4353584_4354586_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	84.8	1.2e-165
AZD99822.1|4354675_4355683_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZD99823.1|4355781_4357176_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZD99824.1|4357176_4358457_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.1	2.1e-101
