The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027727	Pseudomonas sp. R5-89-07 chromosome, complete genome	5997145	1353918	1392867	5997145	plate,tRNA,tail	uncultured_Caudovirales_phage(38.1%)	45	NA	NA
AZF03995.1|1353918_1354389_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
AZF03996.1|1354450_1355521_-	Ferric iron ABC transporter, ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	38.4	8.0e-22
AZF03997.1|1355517_1356441_-	Ornithine carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	27.4	1.2e-18
AZF03998.1|1356870_1358979_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA	NA
AZF03999.1|1359078_1359417_+	Glutaredoxin-related protein	NA	NA	NA	NA	NA
AZF04000.1|1359613_1360084_-	Bacterioferritin	NA	NA	NA	NA	NA
AZF04001.1|1360284_1360503_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZF04002.1|1360748_1361351_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA	NA
AZF04003.1|1361414_1362089_-	Ribonuclease T	NA	NA	NA	NA	NA
AZF04004.1|1362085_1363132_-	Dihydroorotase	NA	NA	NA	NA	NA
AZF04005.1|1363288_1364197_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA	NA
AZF04006.1|1364325_1365543_+	Argininosuccinate synthase	NA	NA	NA	NA	NA
AZF04007.1|1366168_1366801_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA	NA
AZF04008.1|1366887_1367070_-	hypothetical protein	NA	NA	NA	NA	NA
AZF04009.1|1367177_1367816_-	Endonuclease III	NA	NA	NA	NA	NA
AZF04010.1|1367906_1368860_-	Electron transport complex protein RnfB	NA	NA	NA	NA	NA
AZF04011.1|1368947_1370999_-|tRNA	Methionyl-tRNA synthetase	tRNA	NA	NA	NA	NA
AZF04012.1|1371170_1372265_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA	NA
AZF04013.1|1372724_1373048_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZF04014.1|1373190_1375782_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	21.5	1.8e-27
AZF04015.1|1375966_1376338_-	hypothetical protein	NA	NA	NA	NA	NA
AZF04016.1|1376330_1376819_-	GepA protein	NA	D0UIM3	Aggregatibacter_phage	45.3	2.9e-27
AZF04017.1|1377083_1377818_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	87.3	8.3e-119
AZF04018.1|1378004_1378124_+	hypothetical protein	NA	NA	NA	NA	NA
AZF04019.1|1378408_1378747_+	Holin	NA	B5TK61	Pseudomonas_phage	85.4	6.2e-45
AZF04020.1|1378766_1379282_+	hypothetical protein	NA	NA	NA	NA	NA
AZF04021.1|1379285_1379894_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	51.7	1.1e-44
AZF04022.1|1379906_1380239_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	68.2	1.8e-36
AZF04023.1|1380235_1381231_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	64.1	4.6e-112
AZF04024.1|1381227_1381956_+|tail	Phage tail fiber	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	53.7	5.4e-38
AZF04025.1|1381952_1382483_+|tail	Phage tail fiber protein	tail	A2I2X8	Vibrio_virus	60.7	1.9e-48
AZF04026.1|1382566_1383184_+	hypothetical protein	NA	NA	NA	NA	NA
AZF04027.1|1383532_1383706_+	hypothetical protein	NA	NA	NA	NA	NA
AZF04028.1|1383708_1384875_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	57.0	5.5e-125
AZF04029.1|1384874_1385381_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	35.1	1.9e-21
AZF04030.1|1385546_1386128_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	39.7	3.1e-28
AZF04031.1|1386124_1386250_+	hypothetical protein	NA	NA	NA	NA	NA
AZF04032.1|1386256_1388476_+|tail	Phage tail length tape-measure protein	tail	NA	NA	NA	NA
AZF04033.1|1388475_1388859_+|tail	Unclassified tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	59.1	1.2e-36
AZF04034.1|1388851_1389064_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	67.1	6.2e-19
AZF04035.1|1389073_1390075_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	55.4	1.8e-100
AZF04036.1|1390097_1390655_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	73.2	9.5e-75
AZF04037.1|1390642_1391143_+	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	66.4	4.0e-40
AZF04038.1|1391224_1391725_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	84.3	1.1e-71
AZF04039.1|1391808_1392867_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	62.4	2.4e-111
>prophage 2
CP027727	Pseudomonas sp. R5-89-07 chromosome, complete genome	5997145	1493772	1498739	5997145		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AZF04137.1|1493772_1494522_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	49.8	5.5e-62
AZF04138.1|1494521_1495199_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	53.1	3.1e-43
AZF04139.1|1495406_1496243_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	8.2e-06
AZF04140.1|1496348_1497356_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	36.2	1.3e-34
AZF04141.1|1497575_1497785_-	Cold shock protein of CSP family	NA	Q9AZD3	Lactococcus_phage	66.7	2.2e-16
AZF04142.1|1498172_1498739_+	Deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	73.3	6.2e-74
>prophage 3
CP027727	Pseudomonas sp. R5-89-07 chromosome, complete genome	5997145	3102888	3142819	5997145	tail,terminase	Pseudomonas_phage(67.44%)	53	NA	NA
AZF05591.1|3102888_3103098_+	hypothetical protein	NA	A0A2D1GNR5	Pseudomonas_phage	56.1	1.0e-10
AZF05592.1|3103101_3104376_-	Error-prone, lesion bypass DNA polymerase V (UmuC)	NA	I6RSM4	Salmonella_phage	51.1	1.9e-110
AZF05593.1|3104368_3104611_-	Error-prone repair protein UmuD	NA	A0A1B1ITQ0	uncultured_Mediterranean_phage	38.0	3.3e-08
AZF05594.1|3105099_3105309_-	hypothetical protein	NA	A0A2H4J2T0	uncultured_Caudovirales_phage	52.2	4.4e-09
AZF05595.1|3105391_3106084_+	Gifsy-2 prophage protein	NA	A0A2H4J991	uncultured_Caudovirales_phage	90.2	4.0e-123
AZF05596.1|3106064_3106592_-	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	77.7	6.0e-63
AZF05597.1|3106588_3107122_-	Phage endolysin	NA	A0A059VA40	Pseudomonas_phage	81.4	9.7e-77
AZF05598.1|3107181_3107310_-	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	57.1	1.5e-07
AZF05599.1|3107744_3108491_-	hypothetical protein	NA	A0A1S5R1J5	Pseudomonas_phage	47.6	3.9e-31
AZF05600.1|3108521_3109220_-	hypothetical protein	NA	A0A2D1GNS6	Pseudomonas_phage	33.9	1.3e-25
AZF05601.1|3109548_3113007_-|tail	Phage tail fiber protein	tail	A0A1B0VMH5	Pseudomonas_phage	81.2	0.0e+00
AZF05602.1|3113066_3113576_-|tail	Phage tail assembly protein I	tail	A0A1B0VMI5	Pseudomonas_phage	88.2	9.2e-77
AZF05603.1|3113715_3114144_-	putative lipoprotein	NA	A0A1B0VMH3	Pseudomonas_phage	70.5	5.6e-51
AZF05604.1|3114213_3114555_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05605.1|3114750_3115311_+	beta-Ig-H3/fasciclin	NA	NA	NA	NA	NA
AZF05606.1|3115454_3115667_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05607.1|3115969_3116743_-|tail	Phage tail assembly protein	tail	A0A1B0VP68	Pseudomonas_phage	92.0	8.6e-143
AZF05608.1|3116745_3117498_-|tail	Phage minor tail protein	tail	A0A1B0VNE0	Pseudomonas_phage	91.2	5.6e-139
AZF05609.1|3117509_3117848_-|tail	Phage minor tail protein	tail	A0A1B0VMG7	Pseudomonas_phage	83.9	1.5e-54
AZF05610.1|3117847_3120904_-|tail	Phage tail length tape-measure protein 1	tail	A0A1B0VMG8	Pseudomonas_phage	38.8	3.2e-172
AZF05611.1|3120931_3121174_-	hypothetical protein	NA	A0A2H4J4F7	uncultured_Caudovirales_phage	57.3	4.4e-21
AZF05612.1|3121251_3121632_-	hypothetical protein	NA	A0A1B0VMH4	Pseudomonas_phage	51.2	1.2e-25
AZF05613.1|3121634_3122306_-	hypothetical protein	NA	A0A0H5BBY3	Pseudomonas_phage	44.2	1.5e-45
AZF05614.1|3122374_3122794_-	hypothetical protein	NA	A0A1B0VMI0	Pseudomonas_phage	88.3	1.1e-62
AZF05615.1|3122790_3123348_-	hypothetical protein	NA	A0A1B0VMI1	Pseudomonas_phage	53.4	3.6e-50
AZF05616.1|3123383_3123755_-	phage-related conserved hypothetical protein	NA	A0A1B0VRJ4	Pseudomonas_phage	94.3	1.5e-60
AZF05617.1|3123770_3123956_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05618.1|3123991_3124495_-	phage-related conserved hypothetical protein	NA	A0A1B0VND3	Pseudomonas_phage	86.1	4.1e-77
AZF05619.1|3124554_3125166_-	hypothetical protein	NA	A0A1B0VMF7	Pseudomonas_phage	89.2	8.5e-93
AZF05620.1|3125191_3126154_-	putative phage protein	NA	A0A1B0VMF8	Pseudomonas_phage	100.0	9.3e-179
AZF05621.1|3126166_3126895_-	hypothetical protein	NA	A0A1B0VMG1	Pseudomonas_phage	97.5	2.2e-124
AZF05622.1|3127406_3128501_-	Phage protein	NA	A0A1B0VMF3	Pseudomonas_phage	93.9	1.8e-186
AZF05623.1|3128475_3129894_-	structural protein	NA	A0A1B0VMH0	Pseudomonas_phage	92.1	1.6e-259
AZF05624.1|3129890_3131192_-|terminase	Phage terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	59.7	1.0e-148
AZF05625.1|3131178_3131640_-	Phage protein	NA	A0A0S2SY97	Pseudomonas_phage	75.6	1.4e-47
AZF05626.1|3131671_3132295_-	hypothetical protein	NA	A0A1B0VRJ1	Pseudomonas_phage	96.6	3.0e-114
AZF05627.1|3132260_3132734_-	hypothetical protein	NA	A0A1B0VNC4	Pseudomonas_phage	51.6	2.8e-35
AZF05628.1|3132730_3132922_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05629.1|3132971_3133316_-	hypothetical protein	NA	A0A193GYR7	Enterobacter_phage	39.2	2.3e-07
AZF05630.1|3133312_3133651_-	hypothetical protein	NA	A0A088FVG2	Escherichia_phage	47.3	2.0e-19
AZF05631.1|3133770_3133947_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05632.1|3134192_3134474_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05633.1|3134642_3135320_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05634.1|3135316_3135916_-	NinG recombination protein	NA	A0A0U1VZM0	Pseudomonas_phage	65.8	1.9e-68
AZF05635.1|3135912_3136383_-	hypothetical protein	NA	A0A2H4J106	uncultured_Caudovirales_phage	61.5	5.0e-53
AZF05636.1|3136379_3137138_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05637.1|3137134_3137923_-	hypothetical protein	NA	A0A1B0VMD9	Pseudomonas_phage	67.6	1.5e-94
AZF05638.1|3137909_3138887_-	Primosomal protein I	NA	A0A1B0VME0	Pseudomonas_phage	74.8	1.6e-117
AZF05639.1|3138888_3139737_-	Phage antirepressor protein	NA	A0A2H4J111	uncultured_Caudovirales_phage	69.4	6.3e-54
AZF05640.1|3139868_3140489_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05641.1|3140543_3140771_-	Cro repressor-like protein	NA	A0A127KNT2	Pseudomonas_phage	40.9	6.9e-08
AZF05642.1|3140877_3141522_+	Putative cI prophage repressor protein	NA	K7PH71	Enterobacterial_phage	53.1	2.6e-52
AZF05643.1|3141940_3142819_+	hypothetical protein	NA	M9NYX6	Enterobacteria_phage	33.1	2.9e-38
>prophage 4
CP027727	Pseudomonas sp. R5-89-07 chromosome, complete genome	5997145	3145861	3159769	5997145	tail	uncultured_Caudovirales_phage(38.46%)	24	NA	NA
AZF05648.1|3145861_3146299_+	hypothetical protein	NA	A0A1B0VMC3	Pseudomonas_phage	80.7	2.9e-63
AZF05649.1|3146295_3146481_+	hypothetical protein	NA	NA	NA	NA	NA
AZF05650.1|3146477_3146672_+	hypothetical protein	NA	Q9MC67	Pseudomonas_phage	44.4	1.2e-05
AZF05651.1|3146828_3147647_+	hypothetical protein	NA	U6C6J0	Ralstonia_phage	51.7	6.3e-67
AZF05652.1|3147643_3149269_+|tail	Phage tail length tape-measure protein	tail	A0A2H4J6P1	uncultured_Caudovirales_phage	70.0	4.4e-197
AZF05653.1|3149265_3149508_+	hypothetical protein	NA	A0A2H4J1H1	uncultured_Caudovirales_phage	57.5	7.6e-13
AZF05654.1|3149504_3149975_+	hypothetical protein	NA	A0A2H4J101	uncultured_Caudovirales_phage	88.0	9.8e-73
AZF05655.1|3150044_3150284_+	hypothetical protein	NA	NA	NA	NA	NA
AZF05656.1|3150323_3150494_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05657.1|3150601_3150706_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05658.1|3151029_3152037_+	Nucleoid-associated protein ndpA	NA	L7TI92	Pseudomonas_virus	64.8	1.5e-123
AZF05659.1|3152091_3152589_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05660.1|3152819_3153053_+	hypothetical protein	NA	NA	NA	NA	NA
AZF05661.1|3153124_3153268_+	hypothetical protein	NA	NA	NA	NA	NA
AZF05662.1|3153492_3153735_-	hypothetical protein	NA	A0A2H4J1H6	uncultured_Caudovirales_phage	63.8	2.3e-25
AZF05663.1|3153861_3154173_+	hypothetical protein	NA	NA	NA	NA	NA
AZF05664.1|3154176_3154878_+	Phage protein	NA	A0A059VF56	Pseudomonas_phage	55.5	2.7e-58
AZF05665.1|3154950_3155529_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05666.1|3155644_3156115_+	SAM-dependent methyltransferase	NA	A0A0N7IRF6	Acinetobacter_phage	66.2	5.0e-61
AZF05667.1|3156151_3156370_+	hypothetical protein	NA	A0A2H4J1L2	uncultured_Caudovirales_phage	73.6	1.2e-20
AZF05668.1|3156372_3156588_+	hypothetical protein	NA	NA	NA	NA	NA
AZF05669.1|3156588_3157623_+	Mobile element protein	NA	C8CLF4	Xylella_phage	54.7	1.3e-93
AZF05670.1|3158059_3158806_-	hypothetical protein	NA	NA	NA	NA	NA
AZF05671.1|3158839_3159769_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.1	2.8e-07
>prophage 5
CP027727	Pseudomonas sp. R5-89-07 chromosome, complete genome	5997145	3551561	3557779	5997145	tRNA	uncultured_Caudovirales_phage(83.33%)	8	NA	NA
AZF06015.1|3551561_3551954_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	83.7	1.5e-55
AZF06016.1|3551955_3552306_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	69.4	2.6e-38
AZF06017.1|3552305_3552584_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	59.6	1.8e-26
AZF06018.1|3552580_3552916_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	74.8	2.8e-42
AZF06019.1|3552912_3553914_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	85.7	1.5e-166
AZF06020.1|3554002_3554998_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZF06021.1|3555103_3556498_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZF06022.1|3556498_3557779_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.2	9.1e-97
