assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	1	171992-172073	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	172016-172049	CP033506.1_1455454-1455421	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|68aa|down_0|CP033506.1_172136_172340_-	NA|402aa|up_9|CP033506.1_162491_163697_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_8|CP033506.1_163707_164265_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_7|CP033506.1_164264_165152_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|297aa|up_6|CP033506.1_165576_166467_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|126aa|up_5|CP033506.1_166545_166923_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|166aa|up_4|CP033506.1_167056_167554_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|CP033506.1_167606_167933_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|CP033506.1_167939_168323_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|CP033506.1_168749_170237_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|CP033506.1_170883_171843_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|CP033506.1_172136_172340_-	NA	NA|171aa|down_1|CP033506.1_172518_173031_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|CP033506.1_173372_174113_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|CP033506.1_174126_175101_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|180aa|down_4|CP033506.1_175318_175858_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_5|CP033506.1_175867_176902_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|CP033506.1_177118_177478_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|392aa|down_7|CP033506.1_177501_178677_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|CP033506.1_179062_180313_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2362aa|down_9|CP033506.1_180759_187845_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2	294998-295138	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	53	1	9	295051-295085|295051-295085|295051-295085|295051-295085|295051-295085|295051-295085|295051-295085|295051-295085|295051-295085	CP033506.1_866285-866251|CP033506.1_866340-866306|CP033506.1_1232998-1233032|CP033506.1_2314344-2314310|CP033506.1_2478802-2478768|CP033506.1_2751189-2751155|CP033506.1_785453-785487|CP033506.1_1144673-1144707|CP033506.1_2348567-2348601	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|563aa|up_9|CP033506.1_283466_285155_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|up_8|CP033506.1_285187_286909_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_7|CP033506.1_287052_287727_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|up_6|CP033506.1_287970_289725_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_5|CP033506.1_289727_290468_+	PRK14084, PRK14084, DNA-binding response regulator	NA|146aa|up_4|CP033506.1_290586_291024_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_3|CP033506.1_291016_291718_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|235aa|up_2|CP033506.1_291825_292530_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|CP033506.1_292678_293470_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|387aa|up_0|CP033506.1_293485_294646_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|CP033506.1_295388_296150_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|253aa|down_1|CP033506.1_296400_297159_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|CP033506.1_297309_297714_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|223aa|down_3|CP033506.1_297728_298397_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|CP033506.1_298844_299843_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|54aa|down_5|CP033506.1_300103_300265_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|459aa|down_6|CP033506.1_300326_301703_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|CP033506.1_301936_302929_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|CP033506.1_303254_304205_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|93aa|down_9|CP033506.1_304256_304535_-	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	3	723044-723142	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|230aa|down_2|CP033506.1_724963_725653_-,NA|55aa|down_4|CP033506.1_726289_726454_+,NA|100aa|down_5|CP033506.1_726813_727113_+	NA|206aa|up_9|CP033506.1_712221_712839_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|CP033506.1_712854_713862_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|CP033506.1_714450_715248_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|CP033506.1_715608_716253_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|203aa|up_5|CP033506.1_716948_717557_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_4|CP033506.1_719176_719602_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|CP033506.1_719791_720508_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_2|CP033506.1_720507_720981_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_1|CP033506.1_721333_721978_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|CP033506.1_722092_722959_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|CP033506.1_723159_724380_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|CP033506.1_724376_724865_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|CP033506.1_724963_725653_-	NA	NA|148aa|down_3|CP033506.1_725779_726223_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|55aa|down_4|CP033506.1_726289_726454_+	NA	NA|100aa|down_5|CP033506.1_726813_727113_+	NA	NA|157aa|down_6|CP033506.1_727262_727733_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|CP033506.1_727828_728395_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|CP033506.1_728396_728855_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|CP033506.1_728857_729541_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	4	775908-775990	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|203aa|up_9|CP033506.1_761894_762503_+	pfam01063, Aminotran_4, Amino-transferase class IV	NA|237aa|up_8|CP033506.1_762862_763573_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP033506.1_763556_764561_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP033506.1_765034_766975_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_5|CP033506.1_767250_769128_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|472aa|up_4|CP033506.1_769504_770920_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|168aa|up_3|CP033506.1_771614_772118_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP033506.1_772110_773625_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|303aa|up_1|CP033506.1_773864_774773_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP033506.1_775216_775759_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP033506.1_776437_777355_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|CP033506.1_777622_779128_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|CP033506.1_779468_779969_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|CP033506.1_779988_780855_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|CP033506.1_781653_782052_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|CP033506.1_782014_784120_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|CP033506.1_784237_785209_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|338aa|down_7|CP033506.1_785873_786887_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|CP033506.1_786873_787830_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|CP033506.1_787826_788588_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	5	822753-822835	5	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	CCAACTTGCATTGTCTGTAGAAATT	25	1	2	822778-822810|822778-822810	CP033506.1_1963019-1963051|CP033506.1_1961618-1961650	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|131aa|up_9|CP033506.1_809998_810391_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|217aa|up_8|CP033506.1_811008_811659_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|CP033506.1_811655_811892_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|631aa|up_6|CP033506.1_812159_814052_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|CP033506.1_814150_816997_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|CP033506.1_817616_818549_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|165aa|up_3|CP033506.1_818554_819049_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|CP033506.1_819400_819886_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP033506.1_819893_821333_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|CP033506.1_821399_822335_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|279aa|down_0|CP033506.1_823174_824011_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP033506.1_824007_825003_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP033506.1_825113_826058_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP033506.1_826630_827218_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|CP033506.1_827460_828363_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|338aa|down_5|CP033506.1_830394_831408_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_6|CP033506.1_831460_832471_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_7|CP033506.1_832609_833800_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_8|CP033506.1_833920_834682_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_9|CP033506.1_834684_836202_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	6	865869-865950	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	865893-865926	CP033506.1_1455421-1455454	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|144aa|down_7|CP033506.1_872640_873072_-	NA|194aa|up_9|CP033506.1_858974_859556_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|CP033506.1_859628_860246_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|CP033506.1_860400_860895_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|CP033506.1_861293_861716_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|CP033506.1_861863_862580_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|CP033506.1_862662_863202_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|CP033506.1_863351_863672_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|CP033506.1_863815_864172_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|123aa|up_1|CP033506.1_864329_864698_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|CP033506.1_864886_865765_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|CP033506.1_866668_867058_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP033506.1_867050_867347_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|187aa|down_2|CP033506.1_867743_868304_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|259aa|down_3|CP033506.1_868611_869388_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|212aa|down_4|CP033506.1_869323_869959_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|306aa|down_5|CP033506.1_870587_871505_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|CP033506.1_871592_872321_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|144aa|down_7|CP033506.1_872640_873072_-	NA	NA|245aa|down_8|CP033506.1_873246_873981_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|321aa|down_9|CP033506.1_875485_876448_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	7	1148553-1148739	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	38	1148572-1148608|1148572-1148608|1148572-1148608|1148572-1148608|1148572-1148608|1148572-1148608|1148572-1148608|1148572-1148608|1148572-1148608|1148572-1148608|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148628-1148664|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720|1148684-1148720	CP033506.1_1367184-1367220|CP033506.1_2504086-2504122|CP033506.1_171976-172012|CP033506.1_817357-817321|CP033506.1_865966-865930|CP033506.1_930156-930192|CP033506.1_1637701-1637665|CP033506.1_1961630-1961594|CP033506.1_1972433-1972397|CP033506.1_2636868-2636904|CP033506.1_374706-374742|CP033506.1_829998-829962|CP033506.1_1046313-1046277|CP033506.1_1637759-1637723|CP033506.1_1961689-1961653|CP033506.1_2348561-2348597|CP033506.1_1455495-1455459|CP033506.1_2314350-2314314|CP033506.1_2586351-2586315|CP033506.1_866235-866199|CP033506.1_866291-866255|CP033506.1_866346-866310|CP033506.1_1148740-1148776|CP033506.1_1232992-1233028|CP033506.1_1233048-1233084|CP033506.1_2478808-2478772|CP033506.1_775896-775932|CP033506.1_1455437-1455401|CP033506.1_1500393-1500429|CP033506.1_1500449-1500485|CP033506.1_1963090-1963054|CP033506.1_1963149-1963113|CP033506.1_2348616-2348652|CP033506.1_2751307-2751271|CP033506.1_822849-822813|CP033506.1_1232936-1232972|CP033506.1_2586295-2586259|CP033506.1_2751251-2751215	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_6|CP033506.1_1142568_1143075_+,NA|62aa|up_3|CP033506.1_1144927_1145113_-,NA|78aa|up_2|CP033506.1_1145734_1145968_-,NA|66aa|up_0|CP033506.1_1148199_1148397_+,NA|76aa|down_4|CP033506.1_1155909_1156137_+	NA|196aa|up_9|CP033506.1_1139227_1139815_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_8|CP033506.1_1139807_1140311_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|134aa|up_7|CP033506.1_1141496_1141898_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_6|CP033506.1_1142568_1143075_+	NA	NA|166aa|up_5|CP033506.1_1143333_1143831_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_4|CP033506.1_1143981_1144332_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_3|CP033506.1_1144927_1145113_-	NA	NA|78aa|up_2|CP033506.1_1145734_1145968_-	NA	NA|262aa|up_1|CP033506.1_1146444_1147230_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|66aa|up_0|CP033506.1_1148199_1148397_+	NA	NA|242aa|down_0|CP033506.1_1150754_1151480_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_1|CP033506.1_1151917_1152919_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|312aa|down_2|CP033506.1_1152938_1153874_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_3|CP033506.1_1154045_1155602_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_4|CP033506.1_1155909_1156137_+	NA	NA|63aa|down_5|CP033506.1_1157636_1157825_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_6|CP033506.1_1158736_1158871_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|45aa|down_7|CP033506.1_1158927_1159062_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|229aa|down_8|CP033506.1_1159194_1159881_+	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family	NA|144aa|down_9|CP033506.1_1162377_1162809_+	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	8	1540622-1540719	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GTTTCTTGTATCTTATTATTTTGA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|618aa|down_6|CP033506.1_1546863_1548717_-,NA|65aa|down_7|CP033506.1_1548845_1549040_-	NA|91aa|up_9|CP033506.1_1529244_1529517_-	cd13831, HU, histone-like DNA-binding protein HU	NA|333aa|up_8|CP033506.1_1529687_1530686_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|437aa|up_7|CP033506.1_1530702_1532013_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|322aa|up_6|CP033506.1_1532234_1533200_-	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|130aa|up_5|CP033506.1_1534026_1534416_-	PRK00023, cmk, (d)CMP kinase	NA|233aa|up_4|CP033506.1_1534791_1535490_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|329aa|up_3|CP033506.1_1535685_1536672_-	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family	NA|363aa|up_2|CP033506.1_1537073_1538162_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|460aa|up_1|CP033506.1_1538657_1540037_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|175aa|up_0|CP033506.1_1540026_1540551_-	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown]	NA|83aa|down_0|CP033506.1_1541087_1541336_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|182aa|down_1|CP033506.1_1541441_1541987_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|311aa|down_2|CP033506.1_1542375_1543308_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|268aa|down_3|CP033506.1_1543762_1544566_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|308aa|down_4|CP033506.1_1544874_1545798_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|306aa|down_5|CP033506.1_1545855_1546773_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|618aa|down_6|CP033506.1_1546863_1548717_-	NA	NA|65aa|down_7|CP033506.1_1548845_1549040_-	NA	NA|259aa|down_8|CP033506.1_1549165_1549942_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|320aa|down_9|CP033506.1_1550186_1551146_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	9	1554579-1554729	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CATTGCATGAACGTACTGCATATACTGCTCTTTAATGCTTGCATAGG	47	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|618aa|up_7|CP033506.1_1546863_1548717_-,NA|65aa|up_6|CP033506.1_1548845_1549040_-,NA|83aa|down_5|CP033506.1_1558729_1558978_-	NA|308aa|up_9|CP033506.1_1544874_1545798_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|306aa|up_8|CP033506.1_1545855_1546773_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|618aa|up_7|CP033506.1_1546863_1548717_-	NA	NA|65aa|up_6|CP033506.1_1548845_1549040_-	NA	NA|259aa|up_5|CP033506.1_1549165_1549942_-	pfam07901, DUF1672, Protein of unknown function (DUF1672)	NA|320aa|up_4|CP033506.1_1550186_1551146_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|98aa|up_3|CP033506.1_1551592_1551886_-	pfam18698, HisK_sensor, Histidine kinase sensor domain	NA|242aa|up_2|CP033506.1_1551866_1552592_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|246aa|up_1|CP033506.1_1552722_1553460_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|142aa|up_0|CP033506.1_1553563_1553989_-	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair]	NA|169aa|down_0|CP033506.1_1554907_1555414_+	COG1547, COG1547, Predicted metal-dependent hydrolase [General function prediction only]	NA|296aa|down_1|CP033506.1_1555491_1556379_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|150aa|down_2|CP033506.1_1556427_1556877_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|181aa|down_3|CP033506.1_1556981_1557524_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|303aa|down_4|CP033506.1_1557605_1558514_+	cd19086, AKR_AKR11C1, AKR11C family of aldo-keto reductase (AKR)	NA|83aa|down_5|CP033506.1_1558729_1558978_-	NA	NA|252aa|down_6|CP033506.1_1558993_1559749_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|271aa|down_7|CP033506.1_1559890_1560703_+	TIGR00112, Pyrroline-5-carboxylate_reductase, pyrroline-5-carboxylate reductase	NA|307aa|down_8|CP033506.1_1560812_1561733_-	TIGR02651, Ribonuclease_Z, ribonuclease Z	NA|495aa|down_9|CP033506.1_1562045_1563530_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	10	2197580-2197736	1	PILER-CR	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	41	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|CP033506.1_2192456_2192687_-,NA|364aa|up_0|CP033506.1_2196475_2197567_+,NA	NA|237aa|up_9|CP033506.1_2188065_2188776_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP033506.1_2188896_2189340_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP033506.1_2189539_2189953_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP033506.1_2190409_2191783_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP033506.1_2192456_2192687_-	NA	NA|313aa|up_4|CP033506.1_2192717_2193656_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP033506.1_2194090_2194756_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP033506.1_2194907_2195228_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP033506.1_2195229_2196210_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP033506.1_2196475_2197567_+	NA	NA|379aa|down_0|CP033506.1_2199273_2200410_-	pfam02037, SAP, SAP domain	NA|286aa|down_1|CP033506.1_2201416_2202274_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_2|CP033506.1_2202341_2203124_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_3|CP033506.1_2203355_2205161_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|418aa|down_4|CP033506.1_2205841_2207095_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_5|CP033506.1_2207412_2209545_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_6|CP033506.1_2209556_2209991_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_7|CP033506.1_2209990_2211097_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|667aa|down_8|CP033506.1_2211415_2213416_-	pfam07564, DUF1542, Domain of Unknown Function (DUF1542)	NA|1610aa|down_9|CP033506.1_2214005_2218835_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_003827835.1_ASM382783v1	CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	11	2636884-2636965	9	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2636908-2636941	CP033506.1_1455454-1455421	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|151aa|up_8|CP033506.1_2627308_2627761_-,NA|68aa|up_3|CP033506.1_2634685_2634889_+,NA|67aa|up_1|CP033506.1_2635896_2636097_+,NA	NA|390aa|up_9|CP033506.1_2625925_2627095_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|151aa|up_8|CP033506.1_2627308_2627761_-	NA	NA|256aa|up_7|CP033506.1_2627970_2628738_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|up_6|CP033506.1_2629095_2630907_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|234aa|up_5|CP033506.1_2632175_2632877_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|up_4|CP033506.1_2633484_2634540_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|68aa|up_3|CP033506.1_2634685_2634889_+	NA	NA|196aa|up_2|CP033506.1_2634931_2635519_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|67aa|up_1|CP033506.1_2635896_2636097_+	NA	NA|77aa|up_0|CP033506.1_2636435_2636666_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|405aa|down_0|CP033506.1_2637066_2638281_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|73aa|down_1|CP033506.1_2638299_2638518_-	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_2|CP033506.1_2638728_2639286_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_3|CP033506.1_2639278_2639983_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|277aa|down_4|CP033506.1_2640247_2641078_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|277aa|down_5|CP033506.1_2641097_2641928_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|311aa|down_6|CP033506.1_2642031_2642964_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|449aa|down_7|CP033506.1_2643060_2644407_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|356aa|down_8|CP033506.1_2644432_2645500_-	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase	NA|99aa|down_9|CP033506.1_2645794_2646091_-	COG4495, COG4495, Uncharacterized protein conserved in bacteria [Function unknown]
