The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	752357	760169	2791218		Hokovirus(16.67%)	10	NA	NA
AYV01430.1|752357_753413_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AYV01431.1|753412_754081_-	Response regulator SaeR, exoprotein expression protein R	NA	NA	NA	NA	NA
AYV01432.1|754073_754547_-	hypothetical protein	NA	NA	NA	NA	NA
AYV01433.1|754888_755329_-	hypothetical protein	NA	NA	NA	NA	NA
AYV01434.1|755600_756185_-	hypothetical protein	NA	NA	NA	NA	NA
AYV01435.1|756283_756997_-	7-carboxy-7-deazaguanine synthase	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AYV01436.1|757000_757420_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
AYV01437.1|757421_758090_-	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AYV01438.1|758440_759034_+	Para-aminobenzoate synthase, amidotransferase component	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
AYV01439.1|759017_760169_+	Para-aminobenzoate synthase, aminase component	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	772140	786869	2791218		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
AYV01448.1|772140_773199_+	Biosynthetic Aromatic amino acid aminotransferase beta	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
AYV01449.1|773493_774036_+	Putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AYV01450.1|774715_775633_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AYV01451.1|775901_777407_-	Di-tripeptide/cation symporter DtpT	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AYV01452.1|777747_778248_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AYV01453.1|778267_779134_-	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA	NA
AYV01454.1|779934_780333_+	Ribonucleotide reduction protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AYV01455.1|780295_782401_+	Ribonucleotide reductase of class Ib (aerobic), alpha subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AYV01456.1|782518_783490_+	Ribonucleotide reductase of class Ib (aerobic), beta subunit	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AYV01457.1|784154_785168_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
AYV01458.1|785154_786111_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AYV01459.1|786107_786869_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	870537	886150	2791218	terminase	Staphylococcus_phage(78.57%)	17	NA	NA
AYV01539.1|870537_871266_-	Exotoxin, phage associated	NA	A0EX09	Staphylococcus_phage	35.4	7.9e-29
AYV01540.1|871440_872175_-	hypothetical protein	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
AYV01541.1|873559_874429_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.5	3.0e-160
AYV01542.1|874445_875903_+	protein VirE in pathogenicity islands SaPI	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	4.6e-278
AYV01543.1|876204_876567_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	93.3	1.2e-62
AYV01544.1|876849_877491_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.4	7.7e-113
AYV01545.1|878064_878406_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	97.3	5.4e-57
AYV01546.1|878417_878996_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AYV01547.1|879013_879232_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01548.1|879282_879810_+	hypothetical protein	NA	Q4ZE87	Staphylococcus_phage	95.4	2.1e-87
AYV01549.1|879812_880154_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	96.5	2.1e-56
AYV01550.1|880150_880720_+|terminase	Putative terminase, superantigen-encoding pathogenicity islands SaPI	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
AYV01551.1|880996_881965_+	hypothetical protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
AYV01552.1|882199_882754_-	Secreted protein Ear, superantigen-encoding pathogenicity islands SaPI	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
AYV01553.1|883782_883977_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01554.1|884209_885061_-	membrane protein	NA	NA	NA	NA	NA
AYV01555.1|885388_886150_+	Iron-sulfur cluster assembly ATPase protein SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	1045958	1054431	2791218		Synechococcus_phage(33.33%)	9	NA	NA
AYV01693.1|1045958_1046441_+	N5-carboxyaminoimidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
AYV01694.1|1046427_1047552_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AYV01695.1|1047555_1048260_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AYV01696.1|1048259_1048523_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
AYV01697.1|1048524_1049196_+	Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit	NA	NA	NA	NA	NA
AYV01698.1|1049188_1051378_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AYV01699.1|1051356_1052841_+	Amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
AYV01700.1|1052833_1053862_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AYV01701.1|1053864_1054431_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	1240871	1327703	2791218	terminase,tRNA,protease,integrase,portal	Staphylococcus_phage(34.29%)	84	1303782:1303799	1331514:1331531
AYV01871.1|1240871_1242179_+|tRNA	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
AYV01872.1|1243486_1244032_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AYV01873.1|1244097_1245501_+|protease	ATP-dependent hsl protease ATP-binding subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
AYV01874.1|1245525_1246299_+	GTP-sensing transcriptional pleiotropic repressor codY	NA	NA	NA	NA	NA
AYV01875.1|1246640_1247408_+	SSU ribosomal protein S2p (SAe)	NA	NA	NA	NA	NA
AYV01876.1|1247921_1248470_+	Translation elongation factor Ts	NA	NA	NA	NA	NA
AYV01877.1|1248606_1249329_+	Uridine monophosphate kinase	NA	NA	NA	NA	NA
AYV01878.1|1249347_1249902_+	Ribosome recycling factor	NA	NA	NA	NA	NA
AYV01879.1|1250274_1251045_+	Undecaprenyl diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
AYV01880.1|1251051_1251834_+	Phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AYV01881.1|1252020_1253307_+|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	protease	NA	NA	NA	NA
AYV01882.1|1253326_1255030_+|tRNA	Prolyl-tRNA synthetase, bacterial type	tRNA	NA	NA	NA	NA
AYV01883.1|1255287_1259604_+	DNA polymerase III polC-type	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
AYV01884.1|1259893_1260361_+	Bacterial ribosome SSU maturation protein RimP	NA	NA	NA	NA	NA
AYV01885.1|1260381_1261557_+	Transcription termination protein NusA	NA	NA	NA	NA	NA
AYV01886.1|1261577_1261835_+	putative nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA	NA
AYV01887.1|1261857_1262175_+	Ribosomal protein L7Ae family protein YlxQ	NA	NA	NA	NA	NA
AYV01888.1|1262179_1264297_+	Translation initiation factor 2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
AYV01889.1|1264682_1265033_+	Ribosome-binding factor A	NA	NA	NA	NA	NA
AYV01890.1|1265201_1266119_+|tRNA	tRNA pseudouridine(55) synthase	tRNA	NA	NA	NA	NA
AYV01891.1|1266133_1267105_+	FMN adenylyltransferase / Riboflavin kinase	NA	A0A1V0SJE1	Klosneuvirus	31.3	6.6e-07
AYV01892.1|1267219_1267489_+	SSU ribosomal protein S15p (S13e)	NA	NA	NA	NA	NA
AYV01893.1|1267858_1269955_+	Polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AYV01894.1|1270139_1271864_+	Ribonuclease J2 (endoribonuclease in RNA processing)	NA	NA	NA	NA	NA
AYV01895.1|1272244_1274488_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
AYV01896.1|1274492_1275206_+	Transcriptional regulator in cluster with Zn-dependent hydrolase	NA	NA	NA	NA	NA
AYV01897.1|1275236_1276502_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	26.8	9.1e-41
AYV01898.1|1276501_1277788_+|protease	zinc protease YmfH	protease	G3MBJ8	Bacillus_virus	27.9	6.7e-15
AYV01899.1|1277787_1278492_+	3-oxoacyl-(acyl-carrier protein) reductase	NA	NA	NA	NA	NA
AYV01900.1|1278596_1279424_+	ACT domain protein	NA	NA	NA	NA	NA
AYV01901.1|1279442_1279835_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01902.1|1279868_1280447_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AYV01903.1|1280672_1281824_+	Nicotinamide-nucleotide amidase	NA	NA	NA	NA	NA
AYV01904.1|1281988_1283032_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
AYV01905.1|1283385_1284984_+	Ribonuclease Y	NA	NA	NA	NA	NA
AYV01906.1|1285240_1285456_-	hypothetical protein	NA	NA	NA	NA	NA
AYV01907.1|1285629_1286427_+	YmdB	NA	NA	NA	NA	NA
AYV01908.1|1286566_1288327_+	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma/alpha subunit	NA	NA	NA	NA	NA
AYV01909.1|1288327_1289194_+	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit	NA	NA	NA	NA	NA
AYV01910.1|1289286_1289580_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01911.1|1289713_1291258_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
AYV01912.1|1291258_1291624_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01913.1|1291650_1292136_+	Substrate-specific component ThiW of predicted thiazole ECF transporter	NA	NA	NA	NA	NA
AYV01914.1|1292443_1295062_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
AYV01915.1|1295074_1297084_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
AYV01916.1|1297098_1297632_+	Glycerol-3-phosphate responsive antiterminator (mRNA-binding)	NA	NA	NA	NA	NA
AYV01917.1|1298106_1298925_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
AYV01918.1|1299053_1300550_+	Glycerol kinase	NA	NA	NA	NA	NA
AYV01919.1|1301120_1302380_+	Aerobic glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYV01920.1|1302526_1303468_+	Lysophospholipase, Monoglyceride lipase	NA	NA	NA	NA	NA
AYV01921.1|1303460_1304456_+|tRNA	tRNA dimethylallyltransferase	tRNA	NA	NA	NA	NA
1303782:1303799	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
AYV01922.1|1304409_1304643_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AYV01923.1|1304864_1305341_-	Glutathione peroxidase and Thioredoxin peroxidase	NA	Q70H87	Fowlpox_virus	37.3	7.9e-22
AYV01924.1|1305452_1306691_+	Ribosome LSU-associated GTP-binding protein HflX	NA	NA	NA	NA	NA
AYV01925.1|1306709_1307948_+	Aluminum resistance protein	NA	NA	NA	NA	NA
AYV01926.1|1308078_1309398_+	Mobile element protein	NA	NA	NA	NA	NA
AYV01927.1|1309711_1310080_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
AYV01928.1|1310098_1311439_+	Glutamine synthetase type I	NA	NA	NA	NA	NA
AYV01929.1|1311578_1312706_-|integrase	integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
AYV01930.1|1312758_1313454_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
AYV01931.1|1313465_1313849_-	hypothetical protein	NA	NA	NA	NA	NA
AYV01932.1|1313994_1314387_-	Phage repressor	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
AYV01933.1|1314554_1314773_+	Transcriptional regulator	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
AYV01934.1|1314799_1315075_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01935.1|1315498_1315705_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
AYV01936.1|1315765_1316449_+	Phage antirepressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
AYV01937.1|1316547_1316709_+	Phage protein (ACLAME 104)	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
AYV01938.1|1316795_1317113_+	Phage protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
AYV01939.1|1317102_1317369_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
AYV01940.1|1317373_1317910_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
AYV01941.1|1317910_1318690_+	phi-ETA orf17 protein (SA bacteriophages 11, Mu50B)	NA	A0A1W6JPW0	Staphylococcus_phage	87.6	6.7e-127
AYV01942.1|1318716_1319265_+	Single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
AYV01943.1|1319277_1320180_+	Putative replication initiation protein (ACLAME 10)	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
AYV01944.1|1320180_1320471_+	Phage protein (ACLAME 80)	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
AYV01945.1|1320485_1320650_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	88.9	1.1e-18
AYV01946.1|1320649_1320961_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01947.1|1320953_1321484_+	Phage DNA-binding protein	NA	A0A1P8VVP1	Streptococcus_phage	38.2	5.2e-22
AYV01948.1|1321729_1322194_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
AYV01949.1|1322194_1322428_+	hypothetical protein	NA	NA	NA	NA	NA
AYV01950.1|1322470_1322959_+	prophage LambdaBa01, positive control factor Xpf	NA	R9TMH4	Paenibacillus_phage	27.7	4.3e-07
AYV01951.1|1323111_1323540_+	hypothetical protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
AYV01952.1|1323526_1324801_+|terminase	Phage terminase, large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.9e-195
AYV01953.1|1324813_1326262_+|portal	Phage portal	portal	Q4ZE36	Staphylococcus_virus	69.4	7.4e-196
AYV01954.1|1326251_1327703_+	hypothetical protein	NA	Q4ZE35	Staphylococcus_virus	61.6	1.8e-109
1331514:1331531	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 6
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	1608311	1616552	2791218		Staphylococcus_phage(16.67%)	7	NA	NA
AYV02187.1|1608311_1609097_-	Zinc ABC transporter, ATP-binding protein ZnuC	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AYV02188.1|1609222_1610113_-	Endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
AYV02189.1|1610122_1611469_-	DEAD-box ATP-dependent RNA helicase CshB	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AYV02190.1|1611582_1612683_-	GTP cyclohydrolase,NIF3/CutA domain	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AYV02191.1|1613156_1613354_+	hypothetical protein	NA	NA	NA	NA	NA
AYV02192.1|1613420_1614527_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AYV02193.1|1615169_1616552_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	6.0e-54
>prophage 7
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	1806575	1879993	2791218	protease,tRNA	Staphylococcus_phage(97.67%)	61	NA	NA
AYV02362.1|1806575_1807220_-|tRNA	tRNA (guanine(46)-N(7))-methyltransferase	tRNA	NA	NA	NA	NA
AYV02363.1|1807234_1807786_-	Putative phosphotransferase YtmP	NA	NA	NA	NA	NA
AYV02364.1|1808383_1809232_-	D-alanine aminotransferase	NA	NA	NA	NA	NA
AYV02365.1|1809235_1810570_-	Putative Xaa-His dipeptidase	NA	NA	NA	NA	NA
AYV02366.1|1810841_1811264_-	Hypothetical protein	NA	NA	NA	NA	NA
AYV02367.1|1811280_1811976_-	Ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA	NA
AYV02368.1|1811972_1813214_-	putative cell division protein YtgP	NA	NA	NA	NA	NA
AYV02369.1|1814041_1815310_+	flavin-containing protein YtfP	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
AYV02370.1|1815426_1821987_-	putative cell-wall-anchored protein SasC (LPXTG motif)	NA	A0A2H4PQU6	Staphylococcus_phage	99.0	1.6e-309
AYV02371.1|1822312_1822624_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AYV02372.1|1822645_1825063_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
AYV02373.1|1825346_1826528_-	MFS-type transporter YttB	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AYV02374.1|1826636_1827590_+	radical SAM protein YtqA	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AYV02375.1|1827586_1828150_+	Putative rRNA methylase YtqB	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AYV02376.1|1828269_1828671_-	Repressor of toxins Rot	NA	NA	NA	NA	NA
AYV02377.1|1829242_1829743_-	Lysophospholipase, Monoglyceride lipase	NA	NA	NA	NA	NA
AYV02378.1|1830308_1831310_+	Proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AYV02379.1|1831543_1831897_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.1	3.2e-60
AYV02380.1|1831909_1833091_-	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.5e-226
AYV02381.1|1833101_1833734_-	Riboflavin synthase eubacterial/eukaryotic	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AYV02382.1|1833740_1834604_-	Diaminohydroxyphosphoribosylaminopyrimidine deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	98.9	3.7e-150
AYV02383.1|1835213_1836716_-	Hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AYV02384.1|1837238_1837553_+	Arsenical resistance operon repressor	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AYV02385.1|1837552_1838845_+	Arsenic efflux pump protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	9.4e-227
AYV02386.1|1838931_1839702_-	Autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	8.9e-39
AYV02387.1|1840062_1840287_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02388.1|1840485_1840956_+	Hypothetical protein	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AYV02389.1|1841068_1841488_+	Hypothetical protein	NA	NA	NA	NA	NA
AYV02390.1|1841493_1841937_-	Hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AYV02391.1|1842232_1842868_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
AYV02392.1|1844148_1844451_+	Hypothetical protein	NA	NA	NA	NA	NA
AYV02393.1|1845804_1846638_-	oxidoreductase of aldo/keto reductase family, subgroup 1	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
AYV02394.1|1846849_1847758_-	Hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AYV02395.1|1847882_1848983_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	99.2	1.1e-204
AYV02396.1|1849407_1851000_+	Phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AYV02397.1|1851377_1852127_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	96.4	4.4e-136
AYV02398.1|1852107_1852587_-	8-oxo-dGTPase Bsu YtkD / 8-oxo-GTPase Bsu YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
AYV02399.1|1852646_1852904_+	Membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AYV02400.1|1852900_1853902_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
AYV02401.1|1853906_1855301_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.3	3.2e-257
AYV02402.1|1855489_1855972_-	Hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.6e-78
AYV02403.1|1856283_1856898_+	Hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	9.5e-36
AYV02404.1|1856978_1857974_+	Hypothetical protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
AYV02405.1|1858049_1858676_+	Hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
AYV02406.1|1858716_1859058_+	Hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
AYV02407.1|1859158_1859731_+	Hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
AYV02408.1|1859927_1860485_-	hypothetical protein	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.7e-77
AYV02409.1|1860670_1860856_-	(Genomic island nu Sa beta2)	NA	NA	NA	NA	NA
AYV02410.1|1860857_1861034_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02411.1|1863896_1866434_+	Hyaluronate lyase precursor	NA	NA	NA	NA	NA
AYV02412.1|1867625_1869239_+	hypothetical protein	NA	NA	NA	NA	NA
AYV02413.1|1869253_1869553_+	hypothetical protein	NA	NA	NA	NA	NA
AYV02414.1|1869679_1870924_-	Type I restriction-modification system, specificity subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	62.1	1.2e-125
AYV02415.1|1870916_1872473_-	Type I restriction-modification system, DNA-methyltransferase subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	2.0e-287
AYV02416.1|1872835_1873555_-|protease	Serine protease	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AYV02417.1|1873704_1874421_-|protease	Serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
AYV02418.1|1874578_1875298_-|protease	Serine protease	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
AYV02419.1|1875418_1876138_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
AYV02420.1|1876195_1876918_-|protease	serine protease SplC	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
AYV02421.1|1878677_1879247_+	putative beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
AYV02422.1|1879720_1879993_-	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	78.8	2.9e-29
>prophage 8
CP033505	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	2791218	1973885	2062974	2791218	tail,terminase,tRNA,protease,holin,integrase,capsid,portal	Staphylococcus_phage(90.14%)	98	2018791:2018806	2068813:2068828
AYV02497.1|1973885_1974188_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C and Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
AYV02498.1|1974554_1976093_+	Sodium/proline symporter	NA	NA	NA	NA	NA
AYV02499.1|1977391_1979395_-	DNA ligase (NAD(+))	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
AYV02500.1|1979398_1981591_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
AYV02501.1|1981587_1982280_-	Heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
AYV02502.1|1982451_1982754_-	His repressor	NA	NA	NA	NA	NA
AYV02503.1|1982862_1984158_-	Adenylosuccinate lyase and SAICAR lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
AYV02504.1|1985017_1986184_+	Staphopain A precursor	NA	NA	NA	NA	NA
AYV02505.1|1986214_1986541_+	hypothetical protein	NA	NA	NA	NA	NA
AYV02506.1|1986832_1987006_-	YebG	NA	NA	NA	NA	NA
AYV02507.1|1986986_1987589_-	Integral membrane protein	NA	NA	NA	NA	NA
AYV02508.1|1987859_1988681_-	NAD synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
AYV02509.1|1988673_1990143_-	Nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
AYV02510.1|1990326_1991403_+	Nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AYV02511.1|1991422_1992217_+	Prephenate dehydratase	NA	NA	NA	NA	NA
AYV02512.1|1992406_1993969_-	Sodium-dependent anion transporter family	NA	NA	NA	NA	NA
AYV02513.1|1994173_1995271_-	Cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
AYV02514.1|1995642_1996203_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AYV02515.1|1996255_1997185_+	Manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AYV02516.1|1997326_1998646_+	Mobile element protein	NA	NA	NA	NA	NA
AYV02517.1|1999125_2000505_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYV02518.1|2000624_2001653_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AYV02519.1|2001922_2002324_+	hypothetical protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
AYV02520.1|2002896_2003070_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02521.1|2003520_2004561_+	Choloylglycine hydrolase	NA	NA	NA	NA	NA
AYV02522.1|2004617_2005460_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02523.1|2005456_2006014_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02524.1|2006863_2007280_+	hypothetical protein	NA	NA	NA	NA	NA
AYV02525.1|2007345_2008086_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02526.1|2008085_2008958_-	ABC transporter, ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
AYV02527.1|2008954_2009635_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02528.1|2009635_2010532_-	ABC transporter, ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
AYV02529.1|2010528_2010909_-	Transcriptional regulator, GntR family	NA	NA	NA	NA	NA
AYV02530.1|2011167_2011344_-	hypothetical protein	NA	NA	NA	NA	NA
AYV02531.1|2011883_2013170_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
AYV02532.1|2013448_2013739_-	Extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA	NA
AYV02533.1|2013749_2015813_-	Extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA	NA
AYV02534.1|2016197_2016398_+	Beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AYV02535.1|2016769_2016949_+	Phage protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AYV02536.1|2017327_2017519_+	Phage protein	NA	M9NS66	Staphylococcus_phage	100.0	1.7e-23
AYV02537.1|2017571_2017922_-	fibrinogen binding phage associated protein	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
AYV02538.1|2018430_2018727_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	R9QTN8	Staphylococcus_phage	99.0	3.0e-51
2018791:2018806	attL	ATAAAAATAACCACAC	NA	NA	NA	NA
AYV02539.1|2019417_2019909_-	Staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
AYV02540.1|2020099_2020855_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AYV02541.1|2020866_2021121_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AYV02542.1|2021651_2022026_-	Phage protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
AYV02543.1|2022081_2022369_-	Phage protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
AYV02544.1|2022559_2026342_-	Structural protein, phage associated	NA	R9QT86	Staphylococcus_phage	100.0	0.0e+00
AYV02545.1|2026357_2027848_-	Phage protein	NA	R9QST9	Staphylococcus_phage	100.0	3.1e-298
AYV02546.1|2027847_2032497_-|tail	Phage tail length tape-measure protein	tail	R9QSQ8	Staphylococcus_phage	100.0	0.0e+00
AYV02547.1|2032734_2033181_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
AYV02548.1|2033245_2034199_-|tail	Phage major tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
AYV02549.1|2034199_2034580_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
AYV02550.1|2034576_2034954_-	Phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
AYV02551.1|2034953_2035289_-	hypothetical protein	NA	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
AYV02552.1|2035275_2035608_-	Phage DNA packaging	NA	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
AYV02553.1|2035616_2035775_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
AYV02554.1|2035810_2037058_-|capsid	Phage capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
AYV02555.1|2037145_2037730_-|protease	Phage maturation protease	protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
AYV02556.1|2037722_2038973_-|portal	Phage portal protein	portal	R9QSV8	Staphylococcus_phage	100.0	1.7e-236
AYV02557.1|2038978_2039179_-	hypothetical protein	NA	R9QT78	Staphylococcus_phage	100.0	7.6e-27
AYV02558.1|2039192_2040887_-|terminase	Phage terminase, large subunit	terminase	A0A1V0E5G5	Staphylococcus_phage	100.0	0.0e+00
AYV02559.1|2040889_2041357_-|terminase	Phage terminase, small subunit	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
AYV02560.1|2041485_2041839_-	hypothetical protein	NA	D2JLE2	Staphylococcus_phage	100.0	1.3e-66
AYV02561.1|2041845_2042298_-	hypothetical protein	NA	R9QTP3	Staphylococcus_phage	100.0	1.8e-79
AYV02562.1|2044050_2044257_-	Phage protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
AYV02563.1|2044293_2044830_-	Dimeric dUTPase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
AYV02564.1|2044822_2045071_-	Phage protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
AYV02565.1|2045063_2045348_-	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
AYV02566.1|2045344_2045794_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
AYV02567.1|2045790_2045985_-	Phage protein	NA	A0A2I6PE33	Staphylococcus_phage	100.0	2.5e-27
AYV02568.1|2045981_2046368_-	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
AYV02569.1|2046381_2046624_-	Phage protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
AYV02570.1|2046627_2046996_-	Phage protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
AYV02571.1|2047008_2047413_-	Phage Holliday junction resolvase	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
AYV02572.1|2047421_2047640_-	Phage protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AYV02573.1|2047646_2048540_-	Phage protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
AYV02574.1|2048569_2049040_-	Single-stranded DNA-binding protein, phage associated	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
AYV02575.1|2049040_2049526_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
AYV02576.1|2049738_2050659_-	Recombinational DNA repair protein RecT (prophage associated)	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AYV02577.1|2050677_2052609_-	ATPase involved in DNA repair, phage associated	NA	R9QT82	Staphylococcus_phage	100.0	0.0e+00
AYV02578.1|2052611_2052875_-	Phage protein	NA	R9QT48	Staphylococcus_phage	100.0	7.7e-43
AYV02579.1|2052883_2053144_-	Phage protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
AYV02580.1|2053236_2053398_-	Phage protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
AYV02581.1|2053394_2053715_-	Phage protein	NA	R9QT52	Staphylococcus_phage	100.0	1.5e-56
AYV02582.1|2053773_2054001_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
AYV02583.1|2054002_2054194_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
AYV02584.1|2054243_2054600_+	hypothetical protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
AYV02585.1|2054804_2055593_-	Phage antirepressor protein	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
AYV02586.1|2055608_2055851_-	hypothetical protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
AYV02587.1|2056014_2056731_+	CI repressor, phage associated	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
AYV02588.1|2056742_2057600_+	hypothetical protein	NA	R9QTP0	Staphylococcus_phage	100.0	1.2e-161
AYV02589.1|2057644_2057827_+	Phage protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
AYV02590.1|2058005_2058620_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
AYV02591.1|2058727_2059765_+|integrase	Phage integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
AYV02592.1|2059821_2060646_+	Sphingomyelinase	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AYV02593.1|2060883_2061900_-	Cytolytic pore-forming protein F component -> Leukocidin LukF-PV	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
AYV02594.1|2061921_2062974_-	Cytolytic pore-forming protein S component -> Leukocidin LukS-PV	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
2068813:2068828	attR	ATAAAAATAACCACAC	NA	NA	NA	NA
