assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003815955.1_ASM381595v1	CP033931	Chryseobacterium bernardetii strain H4638 chromosome, complete genome	1	1225303-1227043	1,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	Type II-A,Type II-B, Type II-B, or Type II-C?,Type II-C	GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC,GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	47,47	0	0	NA	NA	NA:NA	22,9	22	TypeII-A,TypeII-B,TypeII-B,orTypeII-C?,TypeII-C	PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	NA|83aa|up_9|CP033931.1_1214726_1214975_+,NA|500aa|up_4|CP033931.1_1221051_1222551_+,NA|119aa|up_2|CP033931.1_1222965_1223322_+,NA|59aa|down_7|CP033931.1_1239350_1239527_-	NA|83aa|up_9|CP033931.1_1214726_1214975_+	NA	NA|364aa|up_8|CP033931.1_1215144_1216236_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|184aa|up_7|CP033931.1_1216411_1216963_-	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|538aa|up_6|CP033931.1_1217267_1218881_-	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown]	NA|602aa|up_5|CP033931.1_1219020_1220826_-	TIGR01394, GTP-binding_protein_TypA/BipA_homolog, GTP-binding protein TypA/BipA	NA|500aa|up_4|CP033931.1_1221051_1222551_+	NA	NA|84aa|up_3|CP033931.1_1222572_1222824_-	pfam06961, DUF1294, Protein of unknown function (DUF1294)	NA|119aa|up_2|CP033931.1_1222965_1223322_+	NA	NA|183aa|up_1|CP033931.1_1223399_1223948_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|225aa|up_0|CP033931.1_1224137_1224812_-	pfam04264, YceI, YceI-like domain	cas2|113aa|down_0|CP033931.1_1227100_1227439_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|298aa|down_1|CP033931.1_1227435_1228329_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1407aa|down_2|CP033931.1_1228341_1232562_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|708aa|down_3|CP033931.1_1233279_1235403_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|211aa|down_4|CP033931.1_1235523_1236156_+	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|524aa|down_5|CP033931.1_1236236_1237808_-	cd08015, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily	NA|383aa|down_6|CP033931.1_1237972_1239121_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|59aa|down_7|CP033931.1_1239350_1239527_-	NA	NA|495aa|down_8|CP033931.1_1239855_1241340_+	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|304aa|down_9|CP033931.1_1241577_1242489_+	pfam12833, HTH_18, Helix-turn-helix domain
GCA_003815955.1_ASM381595v1	CP033931	Chryseobacterium bernardetii strain H4638 chromosome, complete genome	2	3201453-3201551	2	CRISPRCasFinder	no		PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	Orphan	TTTATTATCTTATTGAAAATGATTAAGTTTGTTAT	35	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	NA|423aa|up_6|CP033931.1_3192995_3194264_-,NA|299aa|up_5|CP033931.1_3194399_3195296_-,NA|176aa|up_1|CP033931.1_3197975_3198503_+,NA|75aa|down_0|CP033931.1_3201565_3201790_+,NA|222aa|down_9|CP033931.1_3210122_3210788_+	NA|96aa|up_9|CP033931.1_3191569_3191857_+	pfam13239, 2TM, 2TM domain	NA|88aa|up_8|CP033931.1_3191877_3192141_+	pfam13239, 2TM, 2TM domain	NA|248aa|up_7|CP033931.1_3192205_3192949_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|423aa|up_6|CP033931.1_3192995_3194264_-	NA	NA|299aa|up_5|CP033931.1_3194399_3195296_-	NA	NA|240aa|up_4|CP033931.1_3195408_3196128_+	COG4278, COG4278, Uncharacterized conserved protein [Function unknown]	NA|118aa|up_3|CP033931.1_3196148_3196502_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|396aa|up_2|CP033931.1_3196586_3197774_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|176aa|up_1|CP033931.1_3197975_3198503_+	NA	NA|845aa|up_0|CP033931.1_3198816_3201351_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|75aa|down_0|CP033931.1_3201565_3201790_+	NA	NA|371aa|down_1|CP033931.1_3201789_3202902_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|140aa|down_2|CP033931.1_3202999_3203419_+	pfam02657, SufE, Fe-S metabolism associated domain	NA|306aa|down_3|CP033931.1_3203469_3204387_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|295aa|down_4|CP033931.1_3204391_3205276_+	cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	NA|415aa|down_5|CP033931.1_3205662_3206907_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|441aa|down_6|CP033931.1_3207090_3208413_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|197aa|down_7|CP033931.1_3208414_3209005_+	PRK04860, PRK04860, SprT family zinc-dependent metalloprotease	NA|351aa|down_8|CP033931.1_3209037_3210090_+	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose	NA|222aa|down_9|CP033931.1_3210122_3210788_+	NA
GCA_003815955.1_ASM381595v1	CP033931	Chryseobacterium bernardetii strain H4638 chromosome, complete genome	4	4453789-4453897	4	CRISPRCasFinder	no		PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	Orphan	TTCGGAATTGCACTCATTCCAAAA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	NA|495aa|up_9|CP033931.1_4445638_4447123_-,NA|74aa|up_8|CP033931.1_4447323_4447545_-,NA|134aa|up_4|CP033931.1_4451082_4451484_+,NA|74aa|up_1|CP033931.1_4452408_4452630_+,NA|366aa|up_0|CP033931.1_4452689_4453787_+,NA|59aa|down_2|CP033931.1_4455713_4455890_-,NA|70aa|down_4|CP033931.1_4456965_4457175_+,NA|144aa|down_5|CP033931.1_4457191_4457623_+,NA|389aa|down_8|CP033931.1_4458521_4459688_+	NA|495aa|up_9|CP033931.1_4445638_4447123_-	NA	NA|74aa|up_8|CP033931.1_4447323_4447545_-	NA	NA|567aa|up_7|CP033931.1_4447820_4449521_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|281aa|up_6|CP033931.1_4449567_4450410_+	pfam09357, RteC, RteC protein	NA|88aa|up_5|CP033931.1_4450650_4450914_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|134aa|up_4|CP033931.1_4451082_4451484_+	NA	NA|84aa|up_3|CP033931.1_4451480_4451732_+	pfam12964, DUF3853, Protein of unknown function (DUF3853)	NA|212aa|up_2|CP033931.1_4451733_4452369_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain	NA|74aa|up_1|CP033931.1_4452408_4452630_+	NA	NA|366aa|up_0|CP033931.1_4452689_4453787_+	NA	NA|278aa|down_0|CP033931.1_4454205_4455039_+	pfam13155, Toprim_2, Toprim-like	NA|184aa|down_1|CP033931.1_4455094_4455646_-	COG3911, COG3911, Predicted ATPase [General function prediction only]	NA|59aa|down_2|CP033931.1_4455713_4455890_-	NA	NA|133aa|down_3|CP033931.1_4456554_4456953_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|70aa|down_4|CP033931.1_4456965_4457175_+	NA	NA|144aa|down_5|CP033931.1_4457191_4457623_+	NA	NA|184aa|down_6|CP033931.1_4457656_4458208_+	TIGR03741, PRTRC_E, PRTRC system protein E	NA|73aa|down_7|CP033931.1_4458225_4458444_+	pfam14454, Prok_Ub, Prokaryotic Ubiquitin	NA|389aa|down_8|CP033931.1_4458521_4459688_+	NA	NA|241aa|down_9|CP033931.1_4459684_4460407_+	pfam14460, Prok-E2_D, Prokaryotic E2 family D
GCA_003815955.1_ASM381595v1	CP033931	Chryseobacterium bernardetii strain H4638 chromosome, complete genome	5	4453977-4454057	5	CRISPRCasFinder	no		PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	Orphan	TTCGGAATTGCACTCATTCCAAAA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	NA|495aa|up_9|CP033931.1_4445638_4447123_-,NA|74aa|up_8|CP033931.1_4447323_4447545_-,NA|134aa|up_4|CP033931.1_4451082_4451484_+,NA|74aa|up_1|CP033931.1_4452408_4452630_+,NA|366aa|up_0|CP033931.1_4452689_4453787_+,NA|59aa|down_2|CP033931.1_4455713_4455890_-,NA|70aa|down_4|CP033931.1_4456965_4457175_+,NA|144aa|down_5|CP033931.1_4457191_4457623_+,NA|389aa|down_8|CP033931.1_4458521_4459688_+	NA|495aa|up_9|CP033931.1_4445638_4447123_-	NA	NA|74aa|up_8|CP033931.1_4447323_4447545_-	NA	NA|567aa|up_7|CP033931.1_4447820_4449521_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|281aa|up_6|CP033931.1_4449567_4450410_+	pfam09357, RteC, RteC protein	NA|88aa|up_5|CP033931.1_4450650_4450914_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|134aa|up_4|CP033931.1_4451082_4451484_+	NA	NA|84aa|up_3|CP033931.1_4451480_4451732_+	pfam12964, DUF3853, Protein of unknown function (DUF3853)	NA|212aa|up_2|CP033931.1_4451733_4452369_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain	NA|74aa|up_1|CP033931.1_4452408_4452630_+	NA	NA|366aa|up_0|CP033931.1_4452689_4453787_+	NA	NA|278aa|down_0|CP033931.1_4454205_4455039_+	pfam13155, Toprim_2, Toprim-like	NA|184aa|down_1|CP033931.1_4455094_4455646_-	COG3911, COG3911, Predicted ATPase [General function prediction only]	NA|59aa|down_2|CP033931.1_4455713_4455890_-	NA	NA|133aa|down_3|CP033931.1_4456554_4456953_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|70aa|down_4|CP033931.1_4456965_4457175_+	NA	NA|144aa|down_5|CP033931.1_4457191_4457623_+	NA	NA|184aa|down_6|CP033931.1_4457656_4458208_+	TIGR03741, PRTRC_E, PRTRC system protein E	NA|73aa|down_7|CP033931.1_4458225_4458444_+	pfam14454, Prok_Ub, Prokaryotic Ubiquitin	NA|389aa|down_8|CP033931.1_4458521_4459688_+	NA	NA|241aa|down_9|CP033931.1_4459684_4460407_+	pfam14460, Prok-E2_D, Prokaryotic E2 family D
GCA_003815955.1_ASM381595v1	CP033931	Chryseobacterium bernardetii strain H4638 chromosome, complete genome	6	4532256-4532337	6	CRISPRCasFinder	no		PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	Orphan	TTACTAATGGAATTAGTATATGA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,cas3	NA|71aa|up_3|CP033931.1_4529842_4530055_-,NA|115aa|up_1|CP033931.1_4531211_4531556_-,NA|232aa|up_0|CP033931.1_4531542_4532238_-,NA|124aa|down_5|CP033931.1_4537621_4537993_+,NA|171aa|down_7|CP033931.1_4539488_4540001_+	NA|649aa|up_9|CP033931.1_4521077_4523024_+	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|416aa|up_8|CP033931.1_4523040_4524288_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|421aa|up_7|CP033931.1_4524284_4525547_+	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion	NA|406aa|up_6|CP033931.1_4525550_4526768_+	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion	NA|159aa|up_5|CP033931.1_4526779_4527256_+	pfam14376, Haem_bd, Haem-binding domain	NA|757aa|up_4|CP033931.1_4527269_4529540_+	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|71aa|up_3|CP033931.1_4529842_4530055_-	NA	NA|267aa|up_2|CP033931.1_4530418_4531219_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|115aa|up_1|CP033931.1_4531211_4531556_-	NA	NA|232aa|up_0|CP033931.1_4531542_4532238_-	NA	NA|329aa|down_0|CP033931.1_4532842_4533829_+	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme	NA|176aa|down_1|CP033931.1_4533837_4534365_+	pfam18138, bacHORMA_1, Bacterial HORMA domain family 1	NA|295aa|down_2|CP033931.1_4534348_4535233_+	pfam00004, AAA, ATPase family associated with various cellular activities (AAA)	NA|258aa|down_3|CP033931.1_4535277_4536051_+	pfam18167, Sa_NUDIX, SMODS-associated NUDIX domain	NA|160aa|down_4|CP033931.1_4536670_4537150_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|124aa|down_5|CP033931.1_4537621_4537993_+	NA	NA|496aa|down_6|CP033931.1_4537998_4539486_+	pfam17517, IgGFc_binding, IgGFc binding protein	NA|171aa|down_7|CP033931.1_4539488_4540001_+	NA	NA|343aa|down_8|CP033931.1_4541549_4542578_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|442aa|down_9|CP033931.1_4543102_4544428_-	cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms
