The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	134892	143301	4636496	transposase	Escherichia_phage(28.57%)	9	NA	NA
AYX22541.1|134892_137448_+	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	4.4e-26
AYX22542.1|137799_138798_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.3	1.0e-31
AYX22543.1|138762_138858_+	exopolygalacturonate lyase	NA	NA	NA	NA	NA
AYX22544.1|138867_139650_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX22545.1|139646_140669_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX26302.1|140682_140757_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYX22546.1|140811_141813_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	2.3e-07
AYX22547.1|141916_142543_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	9.1e-34
AYX22548.1|142536_143301_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	46.3	6.1e-56
>prophage 2
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	503943	569096	4636496	transposase,tRNA,plate	Yellowstone_lake_phycodnavirus(28.57%)	51	NA	NA
AYX22847.1|503943_504402_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX22848.1|504600_505095_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AYX22849.1|505097_506825_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	7.8e-59
AYX22850.1|507143_507254_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22851.1|507284_509090_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.2	3.5e-38
AYX22852.1|509086_509293_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22853.1|509626_510583_-	transcriptional regulator LeuO	NA	NA	NA	NA	NA
AYX22854.1|511260_511476_+	hypothetical protein	NA	NA	NA	NA	NA
AYX22855.1|511904_512363_+|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX22856.1|512509_514072_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AYX22857.1|514074_515166_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AYX22858.1|515167_516598_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AYX22859.1|516612_517215_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AYX22860.1|517455_518637_-	MFS transporter	NA	NA	NA	NA	NA
AYX22861.1|519300_520962_+	transcriptional regulator	NA	NA	NA	NA	NA
AYX22862.1|521062_521347_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26333.1|521901_522894_+	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA	NA
AYX22863.1|522869_524477_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA	NA
AYX22864.1|524463_525174_+	thiamine ABC transporter ATP-binding protein ThiQ	NA	G3M9Y6	Bacillus_virus	34.1	1.0e-20
AYX22865.1|525242_526010_-	DedA family protein	NA	NA	NA	NA	NA
AYX22866.1|526205_528575_+	DNA polymerase II	NA	A0A0P0YM26	Yellowstone_lake_phycodnavirus	25.5	1.5e-31
AYX22867.1|529035_531942_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	37.6	3.0e-23
AYX22868.1|532197_532551_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22869.1|536075_537686_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22870.1|537682_539038_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AYX22871.1|539157_539649_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AYX22872.1|539641_540007_-	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
AYX22873.1|540012_540630_-	DUF3540 domain-containing protein	NA	NA	NA	NA	NA
AYX22874.1|540622_541726_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22875.1|541751_543971_-	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
AYX22876.1|543983_546332_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.9	2.1e-14
AYX22877.1|546435_549039_-	type VI secretion system ATPase TssH	NA	A0A248SJW6	Salicola_phage	28.7	1.9e-77
AYX22878.1|549041_550025_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AYX22879.1|550017_551862_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AYX22880.1|551894_552338_-	lysozyme	NA	NA	NA	NA	NA
AYX22881.1|552411_552930_-	Hcp1 family type VI secretion system effector	NA	NA	NA	NA	NA
AYX22882.1|553092_554604_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AYX22883.1|554603_555164_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AYX22884.1|555174_556188_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22885.1|556517_557261_+	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
AYX22886.1|558483_559104_+|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	tRNA	NA	NA	NA	NA
AYX22887.1|559401_560235_-	molecular chaperone DjlA	NA	NA	NA	NA	NA
AYX22888.1|560419_562762_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AYX22889.1|562829_564134_+	chaperone SurA	NA	NA	NA	NA	NA
AYX22890.1|564117_565113_+	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYX22891.1|565105_565924_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AYX22892.1|565937_566315_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AYX22893.1|566331_567201_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AYX22894.1|567290_567755_-	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
AYX22895.1|567881_568196_-	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
AYX22896.1|568637_569096_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
>prophage 3
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	678043	717973	4636496	transposase,tRNA,plate	Escherichia_phage(33.33%)	36	NA	NA
AYX22982.1|678043_678382_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AYX26341.1|678725_679961_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22983.1|680070_680793_-	histidine kinase	NA	NA	NA	NA	NA
AYX22984.1|680842_682168_-	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
AYX22985.1|682894_683125_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22986.1|683191_684508_-	restriction endonuclease	NA	NA	NA	NA	NA
AYX22987.1|684504_686568_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.2	5.3e-30
AYX22988.1|686598_686688_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYX22989.1|686701_687724_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX22990.1|687720_688503_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX22991.1|688576_689014_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AYX22992.1|689020_689905_-	virulence factor BrkB family protein	NA	NA	NA	NA	NA
AYX22993.1|690001_690592_-	glucose-1-phosphatase	NA	NA	NA	NA	NA
AYX22994.1|690913_692737_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	42.3	1.2e-20
AYX22995.1|693298_694708_+	glutamate--ammonia ligase	NA	NA	NA	NA	NA
AYX22996.1|694724_694838_-	AAA family ATPase	NA	NA	NA	NA	NA
AYX22997.1|694960_696010_+	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.2	4.2e-07
AYX22998.1|696017_697430_+	nitrogen regulation protein NR(I)	NA	Q56AR1	Bacillus_thuringiensis_phage	25.6	3.1e-05
AYX22999.1|697483_698857_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYX26342.1|698859_699027_-	high mobility group protein Z	NA	NA	NA	NA	NA
AYX23000.1|699039_699606_-	GTPase-activating protein	NA	NA	NA	NA	NA
AYX23001.1|699617_699896_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23002.1|700350_701001_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
AYX23003.1|701252_701711_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX23004.1|701962_702421_-|transposase	IS200/IS605 family transposase IS1541A	transposase	NA	NA	NA	NA
AYX23005.1|702829_705628_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	32.8	2.7e-69
AYX23006.1|706119_706743_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AYX23007.1|706770_707757_-	serine/threonine protein kinase	NA	NA	NA	NA	NA
AYX23008.1|707847_708117_-	DUF1040 family protein	NA	NA	NA	NA	NA
AYX23009.1|708216_708858_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AYX26343.1|708857_709388_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AYX23010.1|709445_710654_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYX23011.1|710775_711006_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23012.1|716300_716486_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23013.1|716736_716937_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23014.1|716950_717973_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
>prophage 4
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	740469	789589	4636496	protease,transposase,tail	uncultured_Mediterranean_phage(20.0%)	50	NA	NA
AYX23030.1|740469_740985_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.6	3.6e-28
AYX23031.1|740990_741632_-	stringent starvation protein A	NA	NA	NA	NA	NA
AYX23032.1|741811_742009_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23033.1|742005_742398_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AYX23034.1|742412_742841_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AYX23035.1|743154_744282_-	cell division protein ZapE	NA	NA	NA	NA	NA
AYX23036.1|744505_744910_+	DUF1043 family protein	NA	NA	NA	NA	NA
AYX23037.1|745180_746554_+|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.2	7.4e-20
AYX23038.1|746670_747129_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX26346.1|747354_748443_+|protease	serine endoprotease DegS	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	31.8	2.1e-09
AYX23039.1|748623_749886_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AYX23040.1|750039_750294_-	BolA family iron metabolism protein IbaG	NA	NA	NA	NA	NA
AYX23041.1|750440_750743_-	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA	NA
AYX23042.1|750778_751402_-	phospholipid-binding protein MlaC	NA	NA	NA	NA	NA
AYX23043.1|751414_751972_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
AYX23044.1|751976_752759_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
AYX23045.1|752976_753795_-	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	31.7	2.2e-19
AYX23046.1|754059_755034_+	calcium/sodium antiporter	NA	NA	NA	NA	NA
AYX26347.1|755144_756131_+	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	30.8	6.0e-40
AYX23047.1|756379_756943_+	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	83.0	9.6e-59
AYX23048.1|756939_757503_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AYX23049.1|757486_758032_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
AYX23050.1|758038_758764_+	lipopolysaccharide ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	1.4e-22
AYX23051.1|758825_760259_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
AYX26348.1|760687_761170_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
AYX23052.1|761196_761451_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23053.1|761475_762330_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.0	3.2e-05
AYX23054.1|762326_762599_+	PTS phosphocarrier protein NPr	NA	NA	NA	NA	NA
AYX26349.1|762494_762746_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23055.1|762936_763872_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	38.5	1.5e-48
AYX23056.1|763883_764348_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
AYX23057.1|764485_764872_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
AYX23058.1|765170_765647_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23059.1|765880_766834_+	HTH-type transcriptional regulator TreR	NA	NA	NA	NA	NA
AYX23060.1|767244_768660_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
AYX23061.1|768754_770422_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
AYX26350.1|770774_771185_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
AYX23062.1|771416_771803_-	soluble cytochrome b562 2	NA	NA	NA	NA	NA
AYX23063.1|772010_772649_-	hypothetical protein	NA	A0A1B0VBK8	Salmonella_phage	49.0	5.8e-52
AYX23064.1|772903_774244_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AYX23065.1|774424_774973_+	ribosome-associated protein	NA	NA	NA	NA	NA
AYX23066.1|775084_775366_-	ribonuclease inhibitor	NA	NA	NA	NA	NA
AYX26351.1|775370_775829_-	ribonuclease	NA	NA	NA	NA	NA
AYX26352.1|777773_779729_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
AYX23067.1|779730_780666_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
AYX23068.1|780673_780877_-	DUF1656 domain-containing protein	NA	NA	NA	NA	NA
AYX23069.1|781179_782091_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
AYX23070.1|782351_783218_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYX23071.1|783453_785955_+	toxin	NA	NA	NA	NA	NA
AYX23072.1|785995_789589_+|tail	phage tail tape measure protein	tail	NA	NA	NA	NA
>prophage 5
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	1577635	1645095	4636496	transposase	Escherichia_phage(40.0%)	55	NA	NA
AYX23731.1|1577635_1578658_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX23732.1|1578654_1579437_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX23733.1|1579475_1579811_+	deoxyribonuclease	NA	NA	NA	NA	NA
AYX23734.1|1579825_1580848_+	porphobilinogen synthase	NA	NA	NA	NA	NA
AYX23735.1|1580957_1581446_-	transcription/translation regulatory transformer protein RfaH	NA	NA	NA	NA	NA
AYX26388.1|1581693_1583190_+	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AYX23736.1|1583244_1583946_+	NAD(P)H-flavin reductase	NA	NA	NA	NA	NA
AYX23737.1|1584105_1585269_-	acetyl-CoA C-acyltransferase FadA	NA	NA	NA	NA	NA
AYX23738.1|1585280_1587470_-	fatty acid oxidation complex subunit alpha FadB	NA	NA	NA	NA	NA
AYX23739.1|1587796_1589128_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
AYX23740.1|1589127_1589337_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23741.1|1589441_1589900_+|transposase	IS200/IS605 family transposase IS1541A	transposase	NA	NA	NA	NA
AYX23742.1|1590488_1591940_+	Trk system potassium transporter TrkH	NA	NA	NA	NA	NA
AYX23743.1|1591961_1592495_+	menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA	NA	NA	NA	NA
AYX23744.1|1592778_1592964_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23745.1|1598631_1599669_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
AYX23746.1|1599665_1600625_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA	NA
AYX23747.1|1600659_1601610_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	31.2	8.7e-28
AYX23748.1|1601820_1602372_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYX23749.1|1602334_1602448_+	chemotaxis protein	NA	NA	NA	NA	NA
AYX23750.1|1602461_1603484_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX23751.1|1603480_1604263_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX23752.1|1605319_1606504_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.9	2.0e-13
AYX23753.1|1606754_1607138_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AYX23754.1|1607139_1607685_+	transcription termination/antitermination protein NusG	NA	A0A291AUS6	Sinorhizobium_phage	28.3	5.9e-13
AYX23755.1|1607875_1608304_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AYX23756.1|1608307_1609012_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AYX23757.1|1609376_1609874_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AYX23758.1|1609940_1610333_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AYX23759.1|1610675_1614704_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	1.2e-22
AYX23760.1|1614832_1619053_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.0	8.5e-67
AYX23761.1|1619179_1619638_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX23762.1|1619913_1620027_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23763.1|1620069_1621200_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA	NA
AYX23764.1|1621192_1622008_-	thiazole synthase	NA	NA	NA	NA	NA
AYX26390.1|1622009_1622201_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
AYX23765.1|1622221_1623019_-	HesA/MoeB/ThiF family protein	NA	A0A1V0SAV8	Catovirus	27.8	1.6e-11
AYX26389.1|1623008_1623656_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
AYX23766.1|1623669_1625715_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AYX23767.1|1626090_1626600_-	sigma D regulator	NA	NA	NA	NA	NA
AYX23768.1|1626696_1627479_+	NAD(+) diphosphatase	NA	NA	NA	NA	NA
AYX23769.1|1627571_1628357_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23770.1|1628475_1629543_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AYX23771.1|1629572_1630313_+	deoxyribonuclease V	NA	NA	NA	NA	NA
AYX23772.1|1630358_1630949_+	DUF416 family protein	NA	NA	NA	NA	NA
AYX23773.1|1631137_1631413_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	55.6	3.6e-19
AYX23774.1|1631462_1632116_+	DUF1481 domain-containing protein	NA	NA	NA	NA	NA
AYX23775.1|1632263_1633550_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AYX23776.1|1633609_1635199_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	49.4	2.2e-68
AYX23777.1|1635356_1635587_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23778.1|1635666_1635852_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23779.1|1641522_1642621_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	39.2	2.2e-46
AYX26391.1|1643098_1643284_+	hypothetical protein	NA	NA	NA	NA	NA
AYX23780.1|1643293_1644076_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX23781.1|1644072_1645095_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
>prophage 6
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	1693604	1745603	4636496	protease,transposase	Bacillus_phage(16.67%)	56	NA	NA
AYX23808.1|1693604_1694063_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX26392.1|1694052_1694235_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23809.1|1694274_1696209_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	G8DDJ2	Micromonas_pusilla_virus	44.5	4.4e-119
AYX23810.1|1696265_1696895_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
AYX23811.1|1697041_1697335_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
AYX23812.1|1697462_1697939_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AYX23813.1|1698196_1699645_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
AYX23814.1|1699650_1700313_+	two-component system response regulator PmrA	NA	W8CYM9	Bacillus_phage	35.5	8.4e-30
AYX23815.1|1700309_1701377_+	two-component system sensor histidine kinase PmrB	NA	W8CYF6	Bacillus_phage	21.9	4.7e-06
AYX23816.1|1701471_1702644_-	GTPase ObgE	NA	NA	NA	NA	NA
AYX23817.1|1702644_1703631_-	DMT family transporter	NA	NA	NA	NA	NA
AYX23818.1|1703718_1703976_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AYX23819.1|1703995_1704307_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AYX23820.1|1704566_1705538_+	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	27.6	6.0e-08
AYX23821.1|1705634_1706036_-	DNA-binding protein	NA	A0A0M3LPN5	Mannheimia_phage	45.2	8.5e-09
AYX23822.1|1706165_1706441_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	64.2	1.1e-18
AYX26393.1|1706462_1706642_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23823.1|1706874_1707813_-	malate dehydrogenase	NA	NA	NA	NA	NA
AYX23824.1|1708276_1708747_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
AYX23825.1|1709135_1709399_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AYX23826.1|1709694_1711077_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AYX26394.1|1711247_1712261_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	45.8	3.0e-71
AYX23827.1|1712460_1712988_+	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	62.7	9.3e-56
AYX23828.1|1713105_1713462_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AYX23829.1|1713464_1717382_-	translocation and assembly module TamB	NA	NA	NA	NA	NA
AYX23830.1|1717378_1719115_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AYX23831.1|1719389_1720028_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
AYX23832.1|1720305_1721637_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
AYX23833.1|1721744_1721957_-	DUF1107 domain-containing protein	NA	NA	NA	NA	NA
AYX23834.1|1722292_1722856_+	YtfJ family protein	NA	NA	NA	NA	NA
AYX23835.1|1722858_1723602_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA	NA
AYX23836.1|1724033_1726004_+	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA	NA
AYX23837.1|1726158_1726824_+	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA	NA
AYX23838.1|1726921_1727542_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AYX23839.1|1727884_1728625_+	lysine transporter LysM	NA	NA	NA	NA	NA
AYX23840.1|1728764_1729220_+	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
AYX23841.1|1729341_1729800_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX23842.1|1729995_1730448_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
AYX23843.1|1730487_1730715_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AYX23844.1|1730719_1731040_-	primosomal replication protein N	NA	NA	NA	NA	NA
AYX23845.1|1731045_1731438_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
AYX23846.1|1731451_1731730_-	hypothetical protein	NA	NA	NA	NA	NA
AYX23847.1|1731804_1732506_-	esterase	NA	NA	NA	NA	NA
AYX26395.1|1732465_1732549_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYX23848.1|1732562_1733585_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX23849.1|1733581_1734364_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX23850.1|1734414_1734519_-	phospholipase	NA	NA	NA	NA	NA
AYX23851.1|1734703_1735015_+	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA	NA
AYX23852.1|1735086_1736730_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYX23853.1|1737137_1737878_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
AYX23854.1|1737996_1740531_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.3	2.5e-66
AYX23855.1|1740771_1741197_-	transcriptional regulator	NA	NA	NA	NA	NA
AYX23856.1|1741565_1742864_-	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	35.4	1.3e-66
AYX23857.1|1742963_1743164_-	DUF2065 domain-containing protein	NA	NA	NA	NA	NA
AYX23858.1|1743335_1744340_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AYX23859.1|1744343_1745603_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
>prophage 7
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	2271395	2277567	4636496	transposase,integrase	Escherichia_phage(33.33%)	10	NA	NA
AYX24271.1|2271395_2272178_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX24272.1|2272174_2273197_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX24273.1|2273210_2273387_-|integrase	integrase	integrase	NA	NA	NA	NA
AYX24274.1|2273801_2274119_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	48.1	2.0e-13
AYX24275.1|2274118_2274439_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
AYX24276.1|2274546_2274741_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24277.1|2274787_2275876_-	AAA family ATPase	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	60.4	1.4e-114
AYX24278.1|2275872_2276832_-	toprim domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	41.0	1.6e-50
AYX24279.1|2276824_2277367_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24280.1|2277366_2277567_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.7	1.6e-08
>prophage 8
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	2323745	2378630	4636496	protease,transposase,holin	Planktothrix_phage(15.38%)	51	NA	NA
AYX24327.1|2323745_2324564_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYX24328.1|2324780_2326271_-	molybdate ABC transporter ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	26.8	2.8e-12
AYX24329.1|2326380_2327172_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AYX24330.1|2327471_2327624_+	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA	NA
AYX24331.1|2327858_2328638_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYX24332.1|2328637_2329333_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AYX24333.1|2329326_2330406_+	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	35.1	1.4e-21
AYX24334.1|2330461_2331283_-	pyridoxal phosphatase	NA	NA	NA	NA	NA
AYX24335.1|2331573_2332578_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AYX24336.1|2332762_2334043_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	32.1	2.4e-17
AYX24337.1|2334141_2335179_+	biotin synthase	NA	NA	NA	NA	NA
AYX24338.1|2335178_2336330_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AYX24339.1|2336313_2337117_+	malonyl-[acyl-carrier protein] O-methyltransferase BioC	NA	NA	NA	NA	NA
AYX24340.1|2337109_2337832_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
AYX24341.1|2337983_2338694_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	25.3	3.5e-13
AYX24342.1|2339783_2341799_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AYX24343.1|2342090_2342336_+	DNA-binding protein VF530	NA	NA	NA	NA	NA
AYX24344.1|2342466_2343390_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	27.8	3.7e-23
AYX24345.1|2343921_2344902_+	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA	NA
AYX24346.1|2345002_2345482_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AYX24347.1|2345478_2345724_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AYX24348.1|2345723_2346179_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA	NA
AYX24349.1|2346321_2347032_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
AYX24350.1|2347266_2347725_+|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX24351.1|2347953_2349657_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.5	9.4e-57
AYX24352.1|2349679_2351152_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYX24353.1|2351209_2351806_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
AYX24354.1|2352170_2354219_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	28.5	1.4e-19
AYX24355.1|2354450_2355344_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYX24356.1|2355381_2356263_-	DMT family transporter	NA	NA	NA	NA	NA
AYX24357.1|2356575_2357439_+	xanthosine phosphorylase	NA	Q5YBA4	Grouper_iridovirus	40.7	2.3e-51
AYX24358.1|2357577_2358378_+	MFS transporter	NA	NA	NA	NA	NA
AYX24359.1|2358367_2358826_+|transposase	IS200/IS605 family transposase IS1541A	transposase	NA	NA	NA	NA
AYX24360.1|2359631_2360105_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA	NA
AYX24361.1|2360462_2362277_+	PAS domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.4	1.0e-16
AYX24362.1|2362263_2363628_+	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	29.1	1.3e-05
AYX24363.1|2363975_2365085_+	alkene reductase	NA	NA	NA	NA	NA
AYX24364.1|2365085_2365997_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYX24365.1|2366551_2366779_+	5,10-methylene tetrahydromethanopterin reductase	NA	NA	NA	NA	NA
AYX24366.1|2366789_2367116_+	EthD family reductase	NA	NA	NA	NA	NA
AYX24367.1|2367154_2368261_-	ABC transporter permease	NA	NA	NA	NA	NA
AYX24368.1|2368273_2369449_-	ABC transporter permease	NA	NA	NA	NA	NA
AYX24369.1|2369453_2371196_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.6	6.3e-24
AYX24370.1|2371209_2372196_-	secretion protein HlyD	NA	NA	NA	NA	NA
AYX24371.1|2372247_2372958_-	transcriptional regulator	NA	NA	NA	NA	NA
AYX24372.1|2373348_2374704_+	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.6	4.1e-55
AYX24373.1|2375917_2376112_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24374.1|2376145_2376472_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24375.1|2376612_2376849_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24376.1|2376932_2377247_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24377.1|2377421_2378630_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
>prophage 9
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	2442741	2469480	4636496	coat,transposase,plate,tail	Escherichia_phage(20.0%)	30	NA	NA
AYX24427.1|2442741_2443200_+|transposase	IS200/IS605 family transposase IS1541A	transposase	NA	NA	NA	NA
AYX24428.1|2443989_2445156_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA	NA
AYX24429.1|2445430_2446957_-	MFS transporter	NA	NA	NA	NA	NA
AYX24430.1|2447333_2448362_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AYX24431.1|2448435_2450223_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.5	4.0e-10
AYX24432.1|2450322_2450505_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24433.1|2450644_2451580_-	omptin family outer membrane beta-barrel protein PcoA	NA	NA	NA	NA	NA
AYX24434.1|2451751_2451994_-	DinI family protein	NA	K7PKR6	Enterobacteria_phage	65.0	6.9e-22
AYX24435.1|2452199_2452922_-	LexA family transcriptional regulator	NA	F1C599	Cronobacter_phage	51.9	2.2e-63
AYX24436.1|2452884_2453097_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24437.1|2453195_2453675_+	antitermination protein Q	NA	S5M7R9	Escherichia_phage	61.0	2.3e-37
AYX24438.1|2453876_2455190_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	46.0	1.7e-90
AYX24439.1|2455186_2455816_+	aldolase	NA	A0A077SK32	Escherichia_phage	56.6	2.2e-48
AYX24440.1|2455895_2456711_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
AYX26431.1|2456728_2457481_+	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
AYX24441.1|2458111_2458402_+	hypothetical protein	NA	H6WRZ3	Salmonella_phage	46.3	7.7e-12
AYX24442.1|2458447_2459065_+	ATP-binding protein	NA	NA	NA	NA	NA
AYX24443.1|2459069_2459264_+	DUF2635 domain-containing protein	NA	B5TK66	Pseudomonas_phage	60.4	3.5e-08
AYX24444.1|2459260_2460769_+|tail	phage tail protein	tail	B5TK67	Pseudomonas_phage	44.2	2.4e-104
AYX24445.1|2460790_2461159_+|tail	phage tail protein	tail	NA	NA	NA	NA
AYX24446.1|2461160_2461460_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AYX24447.1|2461580_2463074_+|coat	coat protein	coat	NA	NA	NA	NA
AYX24448.1|2463340_2464747_+	hypothetical protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
AYX24449.1|2464743_2465799_+|tail	phage tail protein	tail	M1PVV2	Vibrio_phage	27.2	1.3e-37
AYX24450.1|2465814_2466411_+|plate	baseplate assembly protein	plate	NA	NA	NA	NA
AYX24451.1|2466407_2466863_+	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
AYX24452.1|2466866_2468003_+|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.5	4.5e-31
AYX24453.1|2467999_2468260_+	DUF2313 domain-containing protein	NA	NA	NA	NA	NA
AYX24454.1|2468256_2468604_+	DUF2313 domain-containing protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	41.3	6.4e-21
AYX24455.1|2468700_2469480_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	52.4	7.1e-52
>prophage 10
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	2591685	2653656	4636496	protease,transposase,tRNA	Bacillus_phage(15.79%)	47	NA	NA
AYX24560.1|2591685_2592144_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX24561.1|2592425_2592689_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	3.6e-16
AYX24562.1|2592874_2593081_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24563.1|2593049_2593370_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	8.2e-15
AYX24564.1|2593395_2595672_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.7	7.4e-166
AYX24565.1|2595964_2596423_+|transposase	IS200/IS605 family transposase IS1541A	transposase	NA	NA	NA	NA
AYX24566.1|2596794_2597013_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AYX24567.1|2597178_2597889_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AYX24568.1|2598107_2599832_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	31.8	3.3e-17
AYX24569.1|2599834_2601601_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.9	6.8e-26
AYX24570.1|2602059_2603022_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	45.7	4.9e-63
AYX24571.1|2603788_2604283_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
AYX24572.1|2604405_2608323_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.8	1.5e-89
AYX24573.1|2608515_2609124_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
AYX24574.1|2609134_2610478_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.4	5.4e-76
AYX24575.1|2610719_2612012_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.5	4.0e-92
AYX24576.1|2612888_2613671_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX24577.1|2613667_2614690_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX24578.1|2615535_2616270_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	27.4	3.6e-21
AYX24579.1|2617256_2617931_+	glycosyltransferase family 25 protein	NA	A0A2H4UUT1	Bodo_saltans_virus	40.5	7.8e-31
AYX24580.1|2618048_2620331_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.2	1.6e-157
AYX24581.1|2620386_2621244_-	formate transporter FocA	NA	NA	NA	NA	NA
AYX24582.1|2621940_2623707_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AYX24583.1|2623855_2624893_+	L-asparaginase 2	NA	NA	NA	NA	NA
AYX24584.1|2625161_2626256_+	hemagglutinin	NA	B0FIT1	Escherichia_phage	32.7	3.7e-06
AYX24585.1|2626255_2628124_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24586.1|2628490_2629576_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.1	4.4e-84
AYX24587.1|2629738_2631025_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AYX24588.1|2631337_2632030_+	(d)CMP kinase	NA	NA	NA	NA	NA
AYX24589.1|2632203_2633877_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AYX24590.1|2633937_2634222_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	2.4e-10
AYX24591.1|2634205_2634508_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24592.1|2634768_2637060_+	ComEC family protein	NA	NA	NA	NA	NA
AYX24593.1|2637095_2638844_+	lipid A export ATP-binding/permease MsbA	NA	W8CYL7	Bacillus_phage	31.5	8.7e-66
AYX24594.1|2638840_2639827_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AYX24595.1|2639834_2641271_-	VOC family protein	NA	NA	NA	NA	NA
AYX24596.1|2641997_2642207_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	50.0	3.0e-10
AYX24597.1|2642754_2642937_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24598.1|2642933_2643686_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AYX24599.1|2643784_2643988_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24600.1|2644048_2644942_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24601.1|2645714_2646500_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
AYX24602.1|2646496_2647819_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
AYX24603.1|2647799_2648528_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
AYX24604.1|2648524_2652982_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
AYX24605.1|2653025_2653208_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24606.1|2653197_2653656_+|transposase	IS200/IS605 family transposase IS1541A	transposase	NA	NA	NA	NA
>prophage 11
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	2678873	2746553	4636496	protease,transposase,plate	Escherichia_phage(28.57%)	55	NA	NA
AYX24626.1|2678873_2679332_+|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX24627.1|2680492_2681275_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX24628.1|2681271_2682294_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX24629.1|2682307_2682682_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24630.1|2682927_2683116_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24631.1|2683381_2683900_-	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AYX24632.1|2683968_2685741_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
AYX24633.1|2685930_2686386_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
AYX24634.1|2686554_2687013_-|transposase	IS200/IS605 family transposase IS1541B	transposase	NA	NA	NA	NA
AYX24635.1|2687202_2688264_-	porin OmpA	NA	NA	NA	NA	NA
AYX24636.1|2688621_2689128_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
AYX24637.1|2689356_2689992_+	TfoX family DNA transformation protein	NA	NA	NA	NA	NA
AYX24638.1|2690093_2692232_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AYX24639.1|2692261_2692708_-	YccF domain-containing protein	NA	NA	NA	NA	NA
AYX24640.1|2692901_2694956_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.8	1.5e-16
AYX24641.1|2695016_2695481_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYX24642.1|2695659_2696340_-	DUF2057 family protein	NA	NA	NA	NA	NA
AYX24643.1|2696655_2697072_+	CoA-binding protein	NA	NA	NA	NA	NA
AYX24644.1|2697180_2697498_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYX24645.1|2697558_2698749_-	ribosomal RNA large subunit methyltransferase I	NA	W6LLI2	Streptococcus_phage	28.1	2.1e-26
AYX24646.1|2698842_2699121_+	acylphosphatase	NA	NA	NA	NA	NA
AYX24647.1|2699172_2699502_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
AYX24648.1|2703147_2705565_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYX24649.1|2705718_2706465_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.4	3.3e-14
AYX24650.1|2707093_2707414_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26440.1|2707743_2708202_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AYX24651.1|2708191_2709475_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
AYX24652.1|2709467_2710214_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYX24653.1|2710229_2711468_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
AYX24654.1|2711460_2712180_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AYX24655.1|2712172_2712934_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AYX24656.1|2712936_2713725_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYX24657.1|2713763_2714252_+	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
AYX24658.1|2714289_2714538_+	acyl carrier protein	NA	NA	NA	NA	NA
AYX24659.1|2714636_2715485_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
AYX24660.1|2716473_2716974_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AYX24661.1|2717016_2718561_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AYX24662.1|2718572_2719925_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AYX24663.1|2719921_2720608_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
AYX24664.1|2720607_2722344_+	OmpA family protein	NA	NA	NA	NA	NA
AYX24665.1|2722347_2722839_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
AYX24666.1|2722846_2723026_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24667.1|2723226_2725869_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.6	1.6e-92
AYX24668.1|2725871_2728220_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.1	4.5e-17
AYX24669.1|2728235_2730536_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
AYX24670.1|2730532_2731306_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24671.1|2731459_2731720_+	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
AYX24672.1|2731735_2733919_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
AYX24673.1|2734091_2734562_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26441.1|2736837_2737959_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24674.1|2737955_2741378_+	type VI secretion protein VasK	NA	NA	NA	NA	NA
AYX24675.1|2741421_2743023_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AYX24676.1|2743013_2744099_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24677.1|2744098_2744569_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24678.1|2744789_2746553_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 12
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	2968824	3018894	4636496	plate,transposase,integrase,tail	Enterobacterial_phage(22.22%)	57	2984006:2984021	3025086:3025101
AYX24870.1|2968824_2968992_+|tail	phage tail protein	tail	K7PGV2	Enterobacterial_phage	71.2	1.0e-16
AYX24871.1|2969142_2969322_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24872.1|2969332_2969809_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
AYX24873.1|2969994_2970606_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AYX24874.1|2970766_2971672_-	chemotaxis protein	NA	NA	NA	NA	NA
AYX24875.1|2971808_2973722_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
AYX24876.1|2974075_2974951_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYX24877.1|2974957_2975197_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24878.1|2975251_2975614_-	flagellar protein FliT	NA	NA	NA	NA	NA
AYX24879.1|2975624_2976023_-	flagella export chaperone FliS	NA	NA	NA	NA	NA
AYX24880.1|2976033_2977434_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
AYX24881.1|2977730_2978840_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
AYX24882.1|2979186_2979909_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AYX24883.1|2980130_2980640_+	flagellar regulatory protein FliZ	NA	NA	NA	NA	NA
AYX24884.1|2980928_2981921_+	D-cysteine desulfhydrase	NA	NA	NA	NA	NA
AYX24885.1|2982044_2982845_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYX24886.1|2982844_2983507_+	cystine ABC transporter permease	NA	NA	NA	NA	NA
AYX24887.1|2983509_2984271_+	L-cystine ABC transporter ATP-binding protein YecC	NA	G9BWD6	Planktothrix_phage	40.5	6.1e-32
2984006:2984021	attL	TCCTGTTTGATGAACC	NA	NA	NA	NA
AYX24888.1|2984562_2984934_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYX24889.1|2984933_2985269_-	transcriptional regulator	NA	NA	NA	NA	NA
AYX24890.1|2985732_2989704_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYX24891.1|2990048_2990246_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24892.1|2990275_2991760_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
AYX24893.1|2992092_2992941_+	ferrous iron permease EfeU	NA	NA	NA	NA	NA
AYX24894.1|2992970_2994101_+	iron uptake system protein EfeO	NA	NA	NA	NA	NA
AYX24895.1|2994111_2995416_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
AYX24896.1|2995501_2996101_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA	NA
AYX24897.1|2996494_2997673_+	N-acetylneuraminate epimerase	NA	NA	NA	NA	NA
AYX24898.1|2997798_2999223_-	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA	NA
AYX24899.1|3000337_3000889_+	attachment invasion locus protein	NA	A0A1B0VBR9	Salmonella_phage	35.0	1.4e-22
AYX24900.1|3000927_3001110_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24901.1|3001228_3001483_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24902.1|3001510_3001852_-	GlpM family protein	NA	NA	NA	NA	NA
AYX24903.1|3001979_3002204_-	DUF2594 family protein	NA	NA	NA	NA	NA
AYX24904.1|3002866_3003523_+	two-component system response regulator UvrY	NA	NA	NA	NA	NA
AYX24905.1|3003494_3005348_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AYX24906.1|3005406_3005955_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AYX24907.1|3006537_3006762_-|integrase	integrase	integrase	K7PLZ2	Enterobacterial_phage	76.8	1.5e-18
AYX24908.1|3006694_3007210_-|integrase	integrase	integrase	H9C152	Pectobacterium_phage	67.5	1.6e-60
AYX24909.1|3007320_3007548_+	DNA helicase	NA	A0A192Y673	Salmonella_phage	57.7	2.1e-12
AYX24910.1|3007916_3008063_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24911.1|3008307_3008481_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24912.1|3008672_3008855_+	hypothetical protein	NA	NA	NA	NA	NA
AYX24913.1|3009116_3009461_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AYX24914.1|3009680_3011194_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AYX26454.1|3011546_3011801_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24915.1|3011805_3012159_-	DUF2778 domain-containing protein	NA	NA	NA	NA	NA
AYX24916.1|3012107_3012323_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24917.1|3012757_3013045_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24918.1|3013061_3013361_-	lysozyme	NA	A0A218M4K8	Erwinia_phage	64.9	2.6e-23
AYX24919.1|3013357_3013717_-|plate	phage baseplate assembly protein V	plate	F1BUP5	Erwinia_phage	62.5	8.9e-18
AYX24920.1|3013747_3014020_+	BrnT family toxin	NA	NA	NA	NA	NA
AYX24921.1|3014000_3014291_+	antitoxin	NA	K4NZP3	Burkholderia_phage	39.4	1.8e-05
AYX24922.1|3014356_3015433_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
AYX24923.1|3017096_3017666_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24924.1|3017677_3018112_-	hypothetical protein	NA	NA	NA	NA	NA
AYX24925.1|3018789_3018894_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
3025086:3025101	attR	TCCTGTTTGATGAACC	NA	NA	NA	NA
>prophage 13
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	3214876	3294130	4636496	terminase,lysis,transposase,holin,tRNA,integrase,tail	Escherichia_phage(11.32%)	94	3250627:3250657	3291641:3291671
AYX25073.1|3214876_3215848_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AYX25074.1|3215844_3216648_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA	NA
AYX25075.1|3216838_3217234_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25076.1|3217413_3218229_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	68.5	2.9e-48
AYX25077.1|3219286_3221083_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	27.3	2.8e-11
AYX25078.1|3221082_3221526_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
AYX25079.1|3221583_3222327_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AYX25080.1|3222535_3223057_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	32.4	6.5e-09
AYX25081.1|3223140_3223260_+	tat protein	NA	NA	NA	NA	NA
AYX25082.1|3223339_3223954_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AYX25083.1|3224115_3225120_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	27.8	4.7e-08
AYX25084.1|3225174_3225960_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
AYX26460.1|3225956_3226715_-	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	30.3	1.2e-16
AYX25085.1|3226790_3227747_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
AYX25086.1|3227767_3229084_+	murein DD-endopeptidase MepM	NA	G3MBP9	Bacillus_virus	44.5	2.4e-15
AYX25087.1|3229350_3230313_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
AYX25088.1|3230339_3230504_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AYX25089.1|3230657_3232100_-	pyruvate kinase	NA	NA	NA	NA	NA
AYX26461.1|3232429_3233299_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AYX25090.1|3233651_3235136_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	36.6	1.2e-79
AYX25091.1|3235179_3235371_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25092.1|3235377_3236019_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
AYX25093.1|3236712_3237177_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
AYX25094.1|3237163_3237493_+	spermidine export protein MdtI	NA	NA	NA	NA	NA
AYX25095.1|3237624_3237969_-	RidA family protein	NA	NA	NA	NA	NA
AYX25096.1|3238099_3240004_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.6	4.5e-92
AYX26462.1|3240075_3240774_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AYX26463.1|3240928_3241516_+	Slp family lipoprotein	NA	NA	NA	NA	NA
AYX25097.1|3241516_3241624_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AYX25098.1|3242158_3243847_+	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	28.9	3.0e-31
AYX26464.1|3244006_3245128_+	ribonuclease D	NA	NA	NA	NA	NA
AYX25099.1|3245364_3245634_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AYX25100.1|3245637_3246450_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AYX25101.1|3246474_3247161_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AYX25102.1|3247586_3247838_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25103.1|3247881_3248154_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25104.1|3248294_3249380_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AYX25105.1|3249450_3250107_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
AYX25106.1|3250209_3250656_+	YcgN family cysteine cluster protein	NA	NA	NA	NA	NA
3250627:3250657	attL	ATATTGAATAAGCCGAGTTGGGCTAAATAAC	NA	NA	NA	NA
AYX25107.1|3250682_3251921_-|integrase	site-specific integrase	integrase	Q20GI2	Phage_258-320	53.3	2.3e-121
AYX25108.1|3251990_3253013_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX25109.1|3253009_3253792_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX25110.1|3253959_3254220_-	DNA-binding protein	NA	Q859D3	Escherichia_coli_phage	42.9	1.7e-10
AYX25111.1|3254519_3255269_-	DNA adenine methylase	NA	Q5QF26	Pseudomonas_virus	48.5	1.5e-54
AYX25112.1|3255244_3255691_+	recombination protein NinB	NA	A0A2H4J8D9	uncultured_Caudovirales_phage	62.5	3.9e-47
AYX25113.1|3255764_3256370_+	recombination protein NinG	NA	A0A1P8DTE0	Proteus_phage	56.9	2.8e-56
AYX25114.1|3256370_3256760_+	antitermination protein	NA	A0A1W6JNX1	Morganella_phage	68.8	1.4e-45
AYX25115.1|3256763_3256982_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25116.1|3257030_3257594_+	hypothetical protein	NA	B6SD63	Bacteriophage	58.0	9.4e-30
AYX25117.1|3258017_3258227_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AYX25118.1|3258223_3258499_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25119.1|3258744_3258942_+|holin	holin	holin	B6SD15	Bacteriophage	64.4	4.9e-18
AYX25120.1|3258972_3259485_+	lysozyme	NA	I6PBN2	Cronobacter_phage	61.6	9.7e-50
AYX25121.1|3259469_3259928_+|lysis	lysis protein	lysis	A0A2H4JHL8	uncultured_Caudovirales_phage	45.3	4.9e-21
AYX25122.1|3260389_3261187_+	hypothetical protein	NA	Q5MBW0	Stx1-converting_phage	60.2	8.5e-69
AYX25123.1|3261643_3262279_+	hypothetical protein	NA	I6S676	Salmonella_phage	71.4	7.2e-87
AYX25124.1|3262309_3262759_+	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	72.9	1.0e-47
AYX25125.1|3262762_3263347_+|terminase	terminase large subunit	terminase	A0A0R6PHH0	Moraxella_phage	70.7	4.8e-69
AYX25126.1|3263394_3264603_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYX25127.1|3264671_3264827_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26465.1|3264823_3265192_-|tail	phage tail protein	tail	B6SCW7	Bacteriophage	42.0	5.0e-08
AYX25128.1|3265253_3266171_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25129.1|3266187_3267186_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25130.1|3267185_3270389_-	host specificity protein J	NA	F1C571	Cronobacter_phage	60.5	0.0e+00
AYX25131.1|3270382_3270562_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25132.1|3270564_3270786_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25133.1|3270960_3271581_-|tail	tail assembly protein	tail	K7PGY0	Enterobacteria_phage	57.0	3.2e-55
AYX25134.1|3271636_3271987_-	hypothetical protein	NA	K7PLP0	Enterobacteria_phage	33.6	9.3e-12
AYX25135.1|3271994_3272546_-	zinc ribbon domain-containing protein	NA	S4TR42	Salmonella_phage	58.0	9.5e-27
AYX25136.1|3272644_3273739_-	hypothetical protein	NA	A0A2H4J0P1	uncultured_Caudovirales_phage	31.9	2.6e-36
AYX25137.1|3273725_3273893_-	Arc family DNA binding domain-containing protein	NA	G9L6D7	Escherichia_phage	61.8	5.2e-13
AYX26466.1|3274016_3274448_+	Arc family DNA-binding protein	NA	G9L6D6	Escherichia_phage	58.4	2.5e-30
AYX25138.1|3274526_3275159_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25139.1|3275419_3276130_-	peptidase P60	NA	K7P6F5	Enterobacteria_phage	76.8	1.3e-108
AYX25140.1|3276132_3276885_-|tail	phage minor tail protein L	tail	A0A1W6JNX9	Morganella_phage	67.7	9.4e-102
AYX25141.1|3277058_3277400_-|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	50.0	1.7e-21
AYX25142.1|3277402_3280906_-|tail	phage tail tape measure protein	tail	K7PMB9	Enterobacterial_phage	33.2	5.2e-118
AYX25143.1|3280906_3281167_-	hypothetical protein	NA	A0A0S2SY90	Pseudomonas_phage	50.0	3.7e-13
AYX25144.1|3281214_3281526_-	hypothetical protein	NA	I6PDG2	Cronobacter_phage	58.3	1.4e-30
AYX25145.1|3281538_3282459_-|tail	phage tail protein	tail	I6PBN6	Cronobacter_phage	49.1	4.4e-61
AYX25146.1|3282524_3282932_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25147.1|3282928_3283513_-	hypothetical protein	NA	G8C7Q1	Escherichia_phage	52.1	3.6e-48
AYX25148.1|3283514_3283865_-	hypothetical protein	NA	I6PD77	Cronobacter_phage	56.0	6.9e-31
AYX25149.1|3283866_3284121_-	hypothetical protein	NA	J9Q7U0	Salmonella_phage	53.1	2.2e-18
AYX25150.1|3284117_3284648_-	hypothetical protein	NA	G8C7P9	Escherichia_phage	46.1	9.1e-27
AYX25151.1|3284647_3285853_-	hypothetical protein	NA	A0A1B0VMF8	Pseudomonas_phage	79.2	1.8e-142
AYX25152.1|3285866_3286640_-	hypothetical protein	NA	A0A1B0VMG1	Pseudomonas_phage	62.3	2.8e-69
AYX25153.1|3286761_3287874_-	hypothetical protein	NA	I6PD76	Cronobacter_phage	58.2	6.0e-121
AYX25154.1|3287874_3288516_-	DUF4055 domain-containing protein	NA	A0A1B0VMH0	Pseudomonas_phage	54.1	3.8e-59
AYX25155.1|3288534_3289263_-	hypothetical protein	NA	A0A1B0VMH0	Pseudomonas_phage	51.4	4.6e-61
AYX25156.1|3289262_3290237_-	hypothetical protein	NA	A0A1W6JNY3	Morganella_phage	81.1	2.3e-153
AYX25157.1|3290241_3291450_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYX25158.1|3291754_3292927_-	MFS transporter	NA	NA	NA	NA	NA
3291641:3291671	attR	ATATTGAATAAGCCGAGTTGGGCTAAATAAC	NA	NA	NA	NA
AYX25159.1|3292930_3294130_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.6	2.4e-38
>prophage 14
CP033690	Yersinia pestis strain FDAARGOS_603 chromosome, complete genome	4636496	3602549	3661316	4636496	protease,transposase,coat,tRNA	Tupanvirus(18.18%)	54	NA	NA
AYX25416.1|3602549_3604937_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AYX25417.1|3604950_3605934_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	7.6e-35
AYX26485.1|3606250_3606331_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
AYX25418.1|3606432_3606789_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AYX25419.1|3606826_3607024_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AYX25420.1|3607120_3607672_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.7	2.6e-16
AYX25421.1|3607675_3609604_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.1	1.1e-127
AYX25422.1|3609994_3610207_+	KTSC domain-containing protein	NA	A0A0K1LMB5	Caulobacter_phage	42.0	9.9e-09
AYX25423.1|3610516_3610894_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25424.1|3610965_3611250_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25425.1|3611535_3612219_+	MarC family NAAT transporter	NA	NA	NA	NA	NA
AYX25426.1|3612340_3613003_-	lytic transglycosylase	NA	NA	NA	NA	NA
AYX25427.1|3613214_3614183_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYX25428.1|3614179_3615070_+	manganese/iron ABC transporter ATP-binding protein	NA	A0A1V0SKJ1	Klosneuvirus	27.5	2.9e-09
AYX25429.1|3615069_3615954_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AYX25430.1|3615950_3616844_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AYX25431.1|3616911_3617124_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25432.1|3617148_3618024_+	fructosamine kinase family protein	NA	NA	NA	NA	NA
AYX25433.1|3618152_3618707_-	hypothetical protein	NA	NA	NA	NA	NA
AYX25434.1|3619117_3619783_+	hexitol phosphatase HxpB	NA	NA	NA	NA	NA
AYX25435.1|3620033_3621242_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYX25436.1|3621289_3621640_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AYX25437.1|3621975_3622812_+	5-keto-4-deoxyuronate isomerase	NA	NA	NA	NA	NA
AYX25438.1|3622903_3623665_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.9	3.1e-20
AYX25439.1|3624000_3625668_+	pectate lyase	NA	NA	NA	NA	NA
AYX25440.1|3625708_3626599_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AYX25441.1|3626591_3627512_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AYX25442.1|3627525_3628653_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	26.5	1.6e-12
AYX25443.1|3628668_3629961_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYX25444.1|3630258_3630969_+	porin	NA	NA	NA	NA	NA
AYX25445.1|3631448_3631997_+	metal-dependent hydrolase	NA	A0A127AVX7	Bacillus_phage	32.9	4.0e-09
AYX25446.1|3632194_3633592_+	L-cystine transporter	NA	NA	NA	NA	NA
AYX25447.1|3633806_3634658_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	28.8	1.3e-11
AYX25448.1|3635042_3635834_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
AYX25449.1|3636020_3637187_-	oligogalacturonate lyase	NA	NA	NA	NA	NA
AYX25450.1|3637513_3638881_+	MFS transporter	NA	NA	NA	NA	NA
AYX25451.1|3638934_3639738_-	molecular chaperone	NA	NA	NA	NA	NA
AYX25452.1|3639734_3640898_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AYX25453.1|3640894_3643507_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AYX25454.1|3643588_3644368_-	fimbrial chaperone	NA	NA	NA	NA	NA
AYX25455.1|3644520_3645063_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AYX25456.1|3645596_3645785_+	hypothetical protein	NA	NA	NA	NA	NA
AYX25457.1|3645720_3646602_-|protease	protease HtpX	protease	NA	NA	NA	NA
AYX25458.1|3647075_3649148_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	34.8	4.0e-86
AYX25459.1|3649167_3649881_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AYX25460.1|3649976_3650474_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AYX25461.1|3650600_3651953_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
AYX25462.1|3651921_3654573_+	PqiB family protein	NA	NA	NA	NA	NA
AYX25463.1|3655051_3655606_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
AYX25464.1|3655611_3656142_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
AYX25465.1|3656162_3656720_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
AYX25466.1|3656750_3657503_+	molecular chaperone	NA	NA	NA	NA	NA
AYX25467.1|3657673_3660121_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AYX25468.1|3660326_3661316_+|coat	spore coat protein U	coat	NA	NA	NA	NA
>prophage 1
CP033689	Yersinia pestis strain FDAARGOS_603 plasmid unnamed1, complete sequence	68554	9383	32355	68554	integrase,transposase,protease	Enterobacteria_phage(50.0%)	24	3992:4009	30531:30548
3992:4009	attL	TTTAGCCAGTTCAGCCGC	NA	NA	NA	NA
AYX22363.1|9383_10352_-|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
AYX22364.1|10851_11400_+	hypothetical protein	NA	NA	NA	NA	NA
AYX22365.1|11876_11990_+	conjugal transfer protein TraT	NA	NA	NA	NA	NA
AYX22366.1|11997_12627_+	complement resistance protein TraT	NA	NA	NA	NA	NA
AYX22367.1|13891_14017_-|integrase	integrase	integrase	NA	NA	NA	NA
AYX22368.1|14638_15805_+	plasmid-partitioning protein SopA	NA	Q7Y3Y6	Yersinia_phage	85.3	3.5e-196
AYX22427.1|15804_16767_+	ParB/RepB/Spo0J family plasmid partition protein	NA	Q7Y3Y7	Yersinia_phage	56.6	3.1e-89
AYX22428.1|16877_17147_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22369.1|18028_18271_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
AYX22370.1|18263_18563_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYX22371.1|18702_19362_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22372.1|19555_19948_+	YopE regulator	NA	NA	NA	NA	NA
AYX22373.1|20757_21930_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	95.4	1.6e-220
AYX22374.1|22704_23130_+	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
AYX22375.1|23053_23242_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22376.1|23277_24377_-|transposase	IS3-like element ISYpe1 family transposase	transposase	S5WIU1	Leptospira_phage	38.5	1.4e-45
AYX22377.1|24476_24806_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22378.1|24944_25409_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22379.1|25427_25979_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	80.3	5.9e-77
AYX22380.1|26142_28458_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	51.6	1.0e-279
AYX22381.1|30746_31046_-	hypothetical protein	NA	NA	NA	NA	NA
30531:30548	attR	TTTAGCCAGTTCAGCCGC	NA	NA	NA	NA
AYX22382.1|31069_31339_-	hypothetical protein	NA	NA	NA	NA	NA
AYX22383.1|31407_31866_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
AYX22384.1|32037_32355_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
CP033692	Yersinia pestis strain FDAARGOS_603 plasmid unnamed3, complete sequence	101615	0	50101	101615	transposase,terminase,tail,capsid	Salmonella_phage(90.7%)	52	NA	NA
AYX26544.1|139_475_+	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	91.0	5.2e-52
AYX26545.1|474_687_+	hypothetical protein	NA	J9Q7S8	Salmonella_phage	95.7	6.8e-34
AYX26546.1|637_820_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26547.1|1255_2320_-	replication protein RepA	NA	J9Q7H0	Salmonella_phage	98.6	2.4e-188
AYX26548.1|3064_3709_+	hypothetical protein	NA	J9Q739	Salmonella_phage	98.1	1.8e-122
AYX26549.1|3784_3931_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26550.1|4986_5259_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26551.1|5168_5357_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26552.1|5505_6591_+	exonuclease SbcCD subunit D	NA	J9Q7S9	Salmonella_phage	98.6	7.7e-206
AYX26553.1|6587_6812_+	hypothetical protein	NA	J9Q7H1	Salmonella_phage	94.9	8.5e-27
AYX26554.1|6820_8737_+	exonuclease	NA	J9Q741	Salmonella_phage	98.6	0.0e+00
AYX26555.1|8726_9473_+	hypothetical protein	NA	J9Q6J5	Salmonella_phage	96.4	4.1e-134
AYX26556.1|9485_10055_+	hypothetical protein	NA	J9Q7Z7	Salmonella_phage	100.0	5.8e-104
AYX26557.1|10263_10722_+|transposase	IS200/IS605 family transposase IS1541A	transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	35.3	5.0e-13
AYX26639.1|10915_11203_+	ABC transporter	NA	J9Q753	Salmonella_phage	93.5	6.2e-46
AYX26558.1|11162_11396_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26559.1|11408_11891_+	hypothetical protein	NA	J9Q805	Salmonella_phage	94.4	5.1e-85
AYX26560.1|11869_12229_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26561.1|12671_13130_+|transposase	IS200/IS605 family transposase IS1541B	transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	35.3	5.0e-13
AYX26562.1|13239_13467_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26563.1|13551_14202_-	hypothetical protein	NA	J9Q754	Salmonella_phage	99.5	4.1e-114
AYX26564.1|15056_15479_-	hypothetical protein	NA	J9Q806	Salmonella_phage	85.0	4.1e-62
AYX26565.1|15538_15817_-	hypothetical protein	NA	J9Q7T9	Salmonella_phage	97.8	4.4e-41
AYX26566.1|15819_17379_-	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	99.0	1.1e-293
AYX26567.1|17443_18142_+	chromosome partitioning protein ParB	NA	J9Q756	Salmonella_phage	98.7	9.6e-125
AYX26568.1|18805_19444_+	ATP-binding cassette domain-containing protein	NA	J9Q807	Salmonella_phage	98.1	4.7e-110
AYX26569.1|19436_19691_+	hypothetical protein	NA	J9Q7U0	Salmonella_phage	97.6	2.0e-40
AYX26570.1|19687_20587_+	hypothetical protein	NA	J9Q7I6	Salmonella_phage	99.7	8.2e-169
AYX26571.1|20596_20863_+	hypothetical protein	NA	J9Q757	Salmonella_phage	100.0	1.3e-42
AYX26572.1|21058_21700_+	DNA-binding protein	NA	J9Q6D4	Salmonella_phage	98.1	1.2e-108
AYX26573.1|21702_22959_+|terminase	terminase	terminase	J9Q7Y2	Salmonella_phage	100.0	1.8e-251
AYX26574.1|22977_24567_+	hypothetical protein	NA	J9Q7R1	Salmonella_phage	99.2	4.2e-301
AYX26575.1|25516_26392_+|capsid	phage major capsid protein	capsid	J9Q710	Salmonella_phage	99.7	8.5e-163
AYX26576.1|26466_27129_+	Ig domain-containing protein	NA	J9Q6D6	Salmonella_phage	97.2	8.5e-107
AYX26577.1|27172_27607_+	hypothetical protein	NA	J9Q7Y3	Salmonella_phage	99.3	3.1e-73
AYX26578.1|27606_28440_+	hypothetical protein	NA	J9Q7R2	Salmonella_phage	99.6	2.9e-152
AYX26579.1|28537_28882_+	hypothetical protein	NA	J9Q7F6	Salmonella_phage	100.0	1.9e-57
AYX26580.1|28872_29346_+	hypothetical protein	NA	J9Q711	Salmonella_phage	99.4	8.9e-82
AYX26581.1|29347_29731_+	hypothetical protein	NA	J9Q6D8	Salmonella_phage	98.4	1.1e-66
AYX26582.1|29805_30552_+	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	98.8	5.2e-129
AYX26583.1|30611_30929_+	hypothetical protein	NA	J9Q7R3	Salmonella_phage	98.1	6.0e-50
AYX26584.1|31009_31279_+	hypothetical protein	NA	J9Q7F7	Salmonella_phage	100.0	8.4e-37
AYX26585.1|35904_36240_+|tail	phage tail protein	tail	J9Q6E1	Salmonella_phage	97.3	5.7e-59
AYX26586.1|36296_37028_+|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	99.1	5.7e-136
AYX26587.1|37020_37818_+|tail	phage tail protein	tail	J9Q7R4	Salmonella_phage	96.2	1.4e-156
AYX26588.1|37805_38393_+|tail	tail assembly protein	tail	J9Q7F8	Salmonella_phage	92.8	5.1e-103
AYX26589.1|44695_44914_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26590.1|45347_45590_+	hypothetical protein	NA	A0A1B0VFW4	Salmonella_phage	65.3	2.4e-19
AYX26640.1|45850_46612_+|tail	tail fiber protein	tail	A0A0K2FIZ6	Escherichia_phage	69.2	6.1e-40
AYX26591.1|46608_46821_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26592.1|46911_47520_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	62.2	4.8e-64
AYX26641.1|49810_50101_-	hypothetical protein	NA	J9Q7R9	Salmonella_phage	94.0	2.7e-33
>prophage 2
CP033692	Yersinia pestis strain FDAARGOS_603 plasmid unnamed3, complete sequence	101615	63003	77771	101615	transposase	Salmonella_phage(41.67%)	20	NA	NA
AYX26598.1|63003_64209_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	90.5	1.7e-206
AYX26599.1|64205_65177_+	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	67.3	1.5e-112
AYX26600.1|65083_65317_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26601.1|65555_66953_+	AAA family ATPase	NA	NA	NA	NA	NA
AYX26602.1|67114_67423_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26603.1|67815_68493_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.9	1.6e-28
AYX26604.1|68492_68714_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26605.1|68724_69144_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AYX26606.1|69197_69977_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26607.1|70375_70882_+	antirestriction protein ArdA	NA	A0A1I9S7Y0	Rhodococcus_phage	29.5	1.1e-08
AYX26608.1|71011_71245_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26609.1|71594_71825_+	DUF905 domain-containing protein	NA	NA	NA	NA	NA
AYX26610.1|71897_73907_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	30.3	7.7e-26
AYX26611.1|74030_75053_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX26612.1|75049_75832_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX26613.1|75907_76945_+	DNA ligase	NA	J9Q7G5	Salmonella_phage	99.4	1.8e-207
AYX26614.1|76944_77121_+	hypothetical protein	NA	J9Q729	Salmonella_phage	94.8	7.7e-23
AYX26642.1|77110_77320_+	hypothetical protein	NA	J9Q6I3	Salmonella_phage	98.5	8.2e-32
AYX26615.1|77316_77469_+	hypothetical protein	NA	J9Q7Z1	Salmonella_phage	96.0	2.0e-19
AYX26616.1|77465_77771_+	C-type natriuretic protein	NA	J9Q7S1	Salmonella_phage	97.0	3.2e-48
>prophage 3
CP033692	Yersinia pestis strain FDAARGOS_603 plasmid unnamed3, complete sequence	101615	84171	101538	101615	integrase	Salmonella_phage(94.12%)	20	77314:77331	90370:90387
77314:77331	attL	CCAATGATTCCATACATC	NA	NA	NA	NA
AYX26643.1|84171_85275_+|integrase	integrase	integrase	A0A1P8DTG6	Proteus_phage	30.9	5.2e-24
AYX26620.1|85269_85656_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYX26621.1|85918_86131_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26622.1|86240_88607_+	porphyrin biosynthesis protein	NA	J9Q7G6	Salmonella_phage	94.4	0.0e+00
AYX26623.1|88703_89939_+	porphyrin biosynthesis protein	NA	J9Q733	Salmonella_phage	99.3	3.0e-238
AYX26624.1|89941_90145_+	hypothetical protein	NA	J9Q6I7	Salmonella_phage	98.5	8.0e-32
AYX26625.1|90119_93644_+	DNA polymerase III subunit alpha	NA	J9Q7Z2	Salmonella_phage	99.2	0.0e+00
90370:90387	attR	GATGTATGGAATCATTGG	NA	NA	NA	NA
AYX26626.1|93640_94084_+	hypothetical protein	NA	J9Q7S4	Salmonella_phage	100.0	7.8e-72
AYX26627.1|94113_94677_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	64.6	2.2e-63
AYX26628.1|94749_95001_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26629.1|95179_95653_+	hypothetical protein	NA	J9Q6I8	Salmonella_phage	97.9	2.4e-71
AYX26630.1|95772_96801_+	regulator	NA	J9Q7Z3	Salmonella_phage	98.5	1.3e-165
AYX26631.1|96861_97806_+	exonuclease	NA	J9Q7S6	Salmonella_phage	99.0	1.3e-180
AYX26632.1|97805_98072_+	hypothetical protein	NA	J9Q7G8	Salmonella_phage	100.0	1.6e-40
AYX26633.1|98074_99151_+	recombinase	NA	J9Q736	Salmonella_phage	99.4	1.2e-203
AYX26634.1|99241_99442_+	hypothetical protein	NA	J9Q6J0	Salmonella_phage	97.0	1.1e-25
AYX26635.1|99445_100276_+	SPFH/Band 7/PHB domain protein	NA	J9Q7Z4	Salmonella_phage	98.6	9.3e-127
AYX26636.1|100429_100801_+	DUF2591 domain-containing protein	NA	J9Q7S7	Salmonella_phage	87.8	4.0e-61
AYX26637.1|100784_101195_+	hypothetical protein	NA	J9Q7G9	Salmonella_phage	97.8	4.1e-75
AYX26638.1|101262_101538_+	hypothetical protein	NA	J9Q738	Salmonella_phage	95.6	1.7e-45
>prophage 1
CP033693	Yersinia pestis strain FDAARGOS_603 plasmid unnamed4	113378	1969	40366	113378	transposase,tail,integrase	Salmonella_phage(38.1%)	40	32405:32422	45457:45474
AYX26644.1|1969_2578_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	62.2	4.8e-64
AYX26645.1|2711_3494_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX26646.1|3490_4513_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX26647.1|4526_4880_-	DNA ligase	NA	J9Q7G5	Salmonella_phage	97.9	8.7e-42
AYX26648.1|4914_5172_-	hypothetical protein	NA	J9Q7R9	Salmonella_phage	94.1	1.3e-34
AYX26744.1|5082_5424_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26649.1|5472_6267_-	hypothetical protein	NA	J9Q7Z0	Salmonella_phage	96.6	3.7e-141
AYX26650.1|6519_7242_+	DUF4145 domain-containing protein	NA	NA	NA	NA	NA
AYX26651.1|7275_8484_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYX26652.1|8952_9975_+|transposase	IS110 family transposase IS1618	transposase	NA	NA	NA	NA
AYX26653.1|11333_11804_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	41.4	2.2e-16
AYX26654.1|12048_13812_-	phospholipase	NA	NA	NA	NA	NA
AYX26655.1|13889_14378_-	phospholipase D family protein	NA	NA	NA	NA	NA
AYX26656.1|15116_15392_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26657.1|17239_17566_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYX26658.1|17565_17793_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AYX26659.1|18094_19300_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	90.5	1.7e-206
AYX26660.1|19296_20268_+	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	67.3	1.5e-112
AYX26661.1|20174_20408_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26662.1|20646_22044_+	AAA family ATPase	NA	NA	NA	NA	NA
AYX26663.1|22205_22514_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26664.1|22906_23584_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.9	1.6e-28
AYX26665.1|23583_23805_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26666.1|23815_24235_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AYX26667.1|24288_25068_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26668.1|25466_25973_+	antirestriction protein ArdA	NA	A0A1I9S7Y0	Rhodococcus_phage	29.5	1.1e-08
AYX26669.1|26102_26336_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26670.1|26685_26916_+	DUF905 domain-containing protein	NA	NA	NA	NA	NA
AYX26671.1|26988_28998_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	30.3	7.7e-26
AYX26672.1|29121_30144_+|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX26673.1|30140_30923_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX26674.1|30998_32036_+	DNA ligase	NA	J9Q7G5	Salmonella_phage	99.4	1.8e-207
AYX26675.1|32035_32212_+	hypothetical protein	NA	J9Q729	Salmonella_phage	94.8	7.7e-23
AYX26745.1|32201_32411_+	hypothetical protein	NA	J9Q6I3	Salmonella_phage	98.5	8.2e-32
32405:32422	attL	CCAATGATTCCATACATC	NA	NA	NA	NA
AYX26676.1|32407_32560_+	hypothetical protein	NA	J9Q7Z1	Salmonella_phage	96.0	2.0e-19
AYX26677.1|32556_32862_+	C-type natriuretic protein	NA	J9Q7S1	Salmonella_phage	97.0	3.2e-48
AYX26678.1|33376_34300_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYX26679.1|34609_35386_+	chaperone protein caf1M	NA	NA	NA	NA	NA
AYX26680.1|37990_38503_+	F1 capsule antigen	NA	NA	NA	NA	NA
AYX26746.1|39262_40366_+|integrase	integrase	integrase	A0A1P8DTG6	Proteus_phage	30.9	5.2e-24
45457:45474	attR	GATGTATGGAATCATTGG	NA	NA	NA	NA
>prophage 2
CP033693	Yersinia pestis strain FDAARGOS_603 plasmid unnamed4	113378	48725	63510	113378		Salmonella_phage(100.0%)	23	NA	NA
AYX26685.1|48725_49169_+	hypothetical protein	NA	J9Q7S4	Salmonella_phage	100.0	7.8e-72
AYX26686.1|49198_49762_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	64.6	2.2e-63
AYX26687.1|49834_50086_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26688.1|50855_51884_+	regulator	NA	J9Q7Z3	Salmonella_phage	98.5	1.3e-165
AYX26689.1|51944_52889_+	exonuclease	NA	J9Q7S6	Salmonella_phage	99.0	1.3e-180
AYX26690.1|52888_53155_+	hypothetical protein	NA	J9Q7G8	Salmonella_phage	100.0	1.6e-40
AYX26691.1|53157_54234_+	recombinase	NA	J9Q736	Salmonella_phage	99.4	1.2e-203
AYX26692.1|54324_54525_+	hypothetical protein	NA	J9Q6J0	Salmonella_phage	97.0	1.1e-25
AYX26693.1|54528_55359_+	SPFH/Band 7/PHB domain protein	NA	J9Q7Z4	Salmonella_phage	98.6	9.3e-127
AYX26694.1|55512_55884_+	DUF2591 domain-containing protein	NA	J9Q7S7	Salmonella_phage	87.8	4.0e-61
AYX26695.1|55867_56278_+	hypothetical protein	NA	J9Q7G9	Salmonella_phage	97.8	4.1e-75
AYX26696.1|56345_56621_+	hypothetical protein	NA	J9Q738	Salmonella_phage	95.6	1.7e-45
AYX26697.1|56661_56841_+	hypothetical protein	NA	J9Q6J1	Salmonella_phage	86.4	5.8e-18
AYX26698.1|56837_57173_+	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	91.0	5.2e-52
AYX26699.1|57172_57385_+	hypothetical protein	NA	J9Q7S8	Salmonella_phage	95.7	6.8e-34
AYX26700.1|57335_57518_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26701.1|57953_59018_-	replication protein RepA	NA	J9Q7H0	Salmonella_phage	98.6	2.4e-188
AYX26702.1|59762_60407_+	hypothetical protein	NA	J9Q739	Salmonella_phage	98.1	1.8e-122
AYX26703.1|60482_60629_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26704.1|61684_61957_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26705.1|61866_62055_-	hypothetical protein	NA	NA	NA	NA	NA
AYX26706.1|62203_63289_+	exonuclease SbcCD subunit D	NA	J9Q7S9	Salmonella_phage	98.6	7.7e-206
AYX26707.1|63285_63510_+	hypothetical protein	NA	J9Q7H1	Salmonella_phage	94.9	8.5e-27
>prophage 3
CP033693	Yersinia pestis strain FDAARGOS_603 plasmid unnamed4	113378	70226	87954	113378	terminase,capsid	Salmonella_phage(100.0%)	22	NA	NA
AYX26710.1|70226_70877_-	hypothetical protein	NA	J9Q754	Salmonella_phage	99.5	4.1e-114
AYX26711.1|71731_72154_-	hypothetical protein	NA	J9Q806	Salmonella_phage	85.0	4.1e-62
AYX26712.1|72213_72492_-	hypothetical protein	NA	J9Q7T9	Salmonella_phage	97.8	4.4e-41
AYX26713.1|72494_74054_-	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	99.0	1.1e-293
AYX26714.1|74118_74817_+	chromosome partitioning protein ParB	NA	J9Q756	Salmonella_phage	98.7	9.6e-125
AYX26715.1|75480_76119_+	ATP-binding cassette domain-containing protein	NA	J9Q807	Salmonella_phage	98.1	4.7e-110
AYX26716.1|76111_76366_+	hypothetical protein	NA	J9Q7U0	Salmonella_phage	97.6	2.0e-40
AYX26717.1|76362_77262_+	hypothetical protein	NA	J9Q7I6	Salmonella_phage	99.7	8.2e-169
AYX26718.1|77271_77538_+	hypothetical protein	NA	J9Q757	Salmonella_phage	100.0	1.3e-42
AYX26719.1|77733_78375_+	DNA-binding protein	NA	J9Q6D4	Salmonella_phage	98.1	1.2e-108
AYX26720.1|78377_79634_+|terminase	terminase	terminase	J9Q7Y2	Salmonella_phage	100.0	1.8e-251
AYX26721.1|79652_81242_+	hypothetical protein	NA	J9Q7R1	Salmonella_phage	99.2	4.2e-301
AYX26722.1|82191_83067_+|capsid	phage major capsid protein	capsid	J9Q710	Salmonella_phage	99.7	8.5e-163
AYX26723.1|83141_83804_+	Ig domain-containing protein	NA	J9Q6D6	Salmonella_phage	97.2	8.5e-107
AYX26724.1|83847_84282_+	hypothetical protein	NA	J9Q7Y3	Salmonella_phage	99.3	3.1e-73
AYX26725.1|84281_85115_+	hypothetical protein	NA	J9Q7R2	Salmonella_phage	99.6	2.9e-152
AYX26726.1|85212_85557_+	hypothetical protein	NA	J9Q7F6	Salmonella_phage	100.0	1.9e-57
AYX26727.1|85547_86021_+	hypothetical protein	NA	J9Q711	Salmonella_phage	99.4	8.9e-82
AYX26728.1|86022_86406_+	hypothetical protein	NA	J9Q6D8	Salmonella_phage	98.4	1.1e-66
AYX26729.1|86480_87227_+	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	98.8	5.2e-129
AYX26730.1|87286_87604_+	hypothetical protein	NA	J9Q7R3	Salmonella_phage	98.1	6.0e-50
AYX26731.1|87684_87954_+	hypothetical protein	NA	J9Q7F7	Salmonella_phage	100.0	8.4e-37
>prophage 4
CP033693	Yersinia pestis strain FDAARGOS_603 plasmid unnamed4	113378	95076	107917	113378	transposase,tail	Salmonella_phage(55.56%)	11	NA	NA
AYX26733.1|95076_99714_+	DUF1983 domain-containing protein	NA	J9Q713	Salmonella_phage	88.6	0.0e+00
AYX26747.1|99731_100349_+	DUF4376 domain-containing protein	NA	Q9LA61	Enterobacterial_phage	38.8	3.0e-29
AYX26734.1|100381_103318_+|tail	phage tail protein	tail	J9Q6E3	Salmonella_phage	33.1	4.6e-11
AYX26735.1|103314_103527_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26736.1|103619_104228_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	62.2	4.8e-64
AYX26737.1|104361_105144_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AYX26738.1|105140_106163_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
AYX26739.1|106176_106530_-	DNA ligase	NA	J9Q7G5	Salmonella_phage	97.9	8.7e-42
AYX26740.1|106564_106822_-	hypothetical protein	NA	J9Q7R9	Salmonella_phage	94.1	1.3e-34
AYX26748.1|106732_107074_+	hypothetical protein	NA	NA	NA	NA	NA
AYX26741.1|107122_107917_-	hypothetical protein	NA	J9Q7Z0	Salmonella_phage	96.6	3.7e-141
