The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	140476	177075	2695908	tRNA,transposase	Streptococcus_phage(42.86%)	32	NA	NA
AYW49146.1|140476_141907_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AYW49147.1|142260_142449_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49148.1|142907_143648_-	23S ribosomal RNA methyltransferase Erm	NA	E4ZFQ0	Streptococcus_phage	50.6	7.9e-61
AYW49149.1|143883_144477_-	GrpB family protein	NA	NA	NA	NA	NA
AYW49150.1|144727_145084_-	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
AYW49151.1|145862_147224_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW49152.1|147662_148100_+	VOC family protein	NA	A0A2K9L4N3	Tupanvirus	30.0	1.5e-06
AYW49153.1|148764_149073_-	DNA methyltransferase	NA	NA	NA	NA	NA
AYW49154.1|149824_150040_-	XRE family transcriptional regulator	NA	A0A0A7RUJ5	Clostridium_phage	46.8	1.3e-08
AYW49155.1|150139_150448_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49156.1|151184_152615_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AYW49157.1|153571_154453_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49158.1|154742_155012_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49159.1|155066_156272_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
AYW49160.1|156527_156848_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYW49161.1|157234_158248_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49162.1|158320_159613_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49163.1|159727_160486_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AYW49164.1|160615_161053_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYW49165.1|161068_162214_-	cysteine desulfurase	NA	NA	NA	NA	NA
AYW49166.1|162279_163317_-|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AYW49167.1|163340_164393_-	selenide, water dikinase SelD	NA	NA	NA	NA	NA
AYW49168.1|164585_165218_-	DUF1648 domain-containing protein	NA	NA	NA	NA	NA
AYW49169.1|165207_165486_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49170.1|165709_166741_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AYW49171.1|167170_167998_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	65.6	1.3e-101
AYW49172.1|168085_169339_-	AI-2E family transporter	NA	NA	NA	NA	NA
AYW49173.1|170250_171609_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW49174.1|172482_173307_-	HAD family hydrolase	NA	NA	NA	NA	NA
AYW49175.1|173416_174550_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AYW49176.1|174574_175309_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	1.0e-31
AYW49177.1|175824_177075_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	2.4e-110
>prophage 2
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	615895	666456	2695908	transposase	Streptococcus_phage(30.0%)	38	NA	NA
AYW49553.1|615895_617146_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	2.4e-110
AYW49554.1|617662_618538_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
AYW49555.1|618551_619046_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49556.1|619100_620084_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AYW51385.1|620105_621590_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	26.1	1.7e-25
AYW49557.1|621911_622787_+	fructokinase	NA	NA	NA	NA	NA
AYW49558.1|622803_623784_-	beta-carotene 15,15'-monooxygenase	NA	NA	NA	NA	NA
AYW49559.1|623770_624115_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49560.1|624338_625424_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	58.1	6.1e-118
AYW49561.1|625427_626612_+	3-phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	51.3	2.4e-107
AYW49562.1|626614_627850_+	DUF1015 domain-containing protein	NA	NA	NA	NA	NA
AYW49563.1|630083_631289_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
AYW49564.1|632022_634368_-	sulfate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	7.9e-30
AYW49565.1|634604_636365_+	alpha-glycosidase	NA	NA	NA	NA	NA
AYW49566.1|636667_637720_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYW49567.1|637848_638199_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AYW49568.1|638945_639233_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49569.1|639672_641034_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW49570.1|641467_643348_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	32.2	1.7e-27
AYW49571.1|643383_644265_+	penicillin-binding protein	NA	NA	NA	NA	NA
AYW49572.1|645370_646729_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW49573.1|646848_647829_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
AYW49574.1|647829_648591_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYW49575.1|649114_650413_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	28.7	1.4e-33
AYW49576.1|651529_651718_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49577.1|651879_653298_+|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
AYW49578.1|653498_654179_+	zeta toxin family protein	NA	NA	NA	NA	NA
AYW49579.1|654631_655276_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49580.1|655398_656649_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.4	6.7e-28
AYW49581.1|656641_658399_+	glycine/betaine ABC transporter permease	NA	NA	NA	NA	NA
AYW49582.1|658606_659422_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AYW49583.1|659573_659933_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49584.1|660096_660696_+	short chain dehydrogenase	NA	NA	NA	NA	NA
AYW49585.1|660859_661129_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
AYW49586.1|661166_661730_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AYW49587.1|662142_663558_+	anion transporter	NA	NA	NA	NA	NA
AYW51386.1|664118_665804_+	ribonuclease J	NA	NA	NA	NA	NA
AYW49588.1|666000_666456_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	34.9	1.1e-17
>prophage 3
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	766949	808602	2695908	transposase	Streptococcus_phage(33.33%)	43	NA	NA
AYW49678.1|766949_767630_+|transposase	IS6-like element ISTeha2 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	82.7	2.2e-110
AYW49679.1|767887_769207_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	46.9	3.7e-109
AYW49680.1|769485_769668_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49681.1|769679_769943_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49682.1|770468_771095_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AYW51392.1|772133_773423_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AYW49683.1|773634_773868_+	toxin-antitoxin system, antitoxin component	NA	NA	NA	NA	NA
AYW49684.1|773864_774134_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	46.5	6.7e-18
AYW49685.1|774566_774845_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AYW49686.1|775265_775667_-	HicB family protein	NA	A0A0K2CYJ8	Paenibacillus_phage	37.2	2.5e-13
AYW49687.1|775705_775897_-	addiction module toxin, HicA family	NA	NA	NA	NA	NA
AYW49688.1|776026_777088_+	acetamidase	NA	NA	NA	NA	NA
AYW49689.1|777249_778077_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49690.1|778144_778615_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49691.1|778943_779174_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
AYW49692.1|779170_779494_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYW49693.1|779764_779992_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49694.1|780014_780227_+	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
AYW49695.1|780846_782205_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW49696.1|782869_784816_-	AlwI family type II restriction endonuclease	NA	A0A2K5B262	Erysipelothrix_phage	24.2	2.4e-08
AYW49697.1|784828_786925_-	DNA adenine methylase	NA	E0YIY3	Lactococcus_phage	45.9	3.2e-67
AYW49698.1|787326_787578_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49699.1|787683_787884_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49700.1|788922_789399_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AYW49701.1|789536_790787_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	1.1e-110
AYW49702.1|791303_791588_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA	NA
AYW49703.1|791607_792969_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AYW49704.1|793019_793514_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49705.1|793528_794173_+	class II aldolase/adducin family protein	NA	A0A077SK32	Escherichia_phage	30.2	5.9e-12
AYW49706.1|794530_795388_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYW49707.1|795479_796751_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AYW49708.1|796782_799005_+	beta-glucosidase BglX	NA	NA	NA	NA	NA
AYW49709.1|799043_799364_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AYW49710.1|799410_800850_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AYW49711.1|800984_801230_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51393.1|801371_801497_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AYW49712.1|801844_803377_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49713.1|803750_804892_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	52.9	6.7e-75
AYW49714.1|805028_805238_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49715.1|805306_805729_+	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
AYW49716.1|805812_806466_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	36.0	2.0e-23
AYW49717.1|806462_807227_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
AYW49718.1|807439_808602_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
>prophage 4
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	823699	889207	2695908	tRNA,transposase,integrase	Streptococcus_phage(50.0%)	53	817847:817862	848273:848288
817847:817862	attL	GGTACAACAAATGAAG	NA	NA	NA	NA
AYW49736.1|823699_824380_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	1.2e-108
AYW49737.1|824411_825209_-	replication initiator protein	NA	NA	NA	NA	NA
AYW49738.1|825906_826284_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AYW49739.1|826439_826622_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49740.1|826900_827101_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49741.1|827476_829123_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	30.1	2.6e-48
AYW49742.1|829135_829537_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AYW49743.1|829779_830142_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49744.1|830158_830773_+	cadmium resistance protein CadD	NA	NA	NA	NA	NA
AYW49745.1|831288_832086_+	replication initiator protein	NA	NA	NA	NA	NA
AYW49746.1|832098_832779_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	1.2e-108
AYW49747.1|833091_833325_+	metal-binding protein	NA	NA	NA	NA	NA
AYW49748.1|833522_835385_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.5	1.8e-98
AYW49749.1|835766_836318_+|integrase	integrase	integrase	D2XR58	Bacillus_phage	41.7	8.3e-31
AYW49750.1|836485_837904_-|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
AYW49751.1|839487_839724_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AYW49752.1|839716_840052_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SEX8	Streptococcus_phage	43.5	3.5e-16
AYW51394.1|840804_841170_-	esterase	NA	NA	NA	NA	NA
AYW49753.1|841433_842252_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AYW49754.1|842344_843796_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	32.6	8.5e-67
AYW49755.1|844002_844725_+	VTC domain-containing protein	NA	NA	NA	NA	NA
AYW49756.1|844714_845389_+	DUF4956 domain-containing protein	NA	NA	NA	NA	NA
AYW49757.1|845407_847258_+	carbohydrate-binding domain-containing protein	NA	NA	NA	NA	NA
AYW51395.1|847466_848330_-	glycine/betaine ABC transporter	NA	NA	NA	NA	NA
848273:848288	attR	CTTCATTTGTTGTACC	NA	NA	NA	NA
AYW49758.1|848379_848940_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49759.1|849182_850652_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYW49760.1|850708_851917_+	NAD-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
AYW49761.1|852470_853010_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49762.1|853872_855369_-	phytoene desaturase	NA	NA	NA	NA	NA
AYW49763.1|855776_856502_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49764.1|856529_857693_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.1	2.8e-28
AYW49765.1|858146_859373_+	MFS transporter	NA	NA	NA	NA	NA
AYW49766.1|859687_859936_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49767.1|861090_861981_-	ribose transporter RbsU	NA	NA	NA	NA	NA
AYW49768.1|862010_862406_-	D-ribose pyranase	NA	NA	NA	NA	NA
AYW49769.1|862429_863335_-	ribokinase	NA	NA	NA	NA	NA
AYW49770.1|863686_864730_+	galactose mutarotase	NA	NA	NA	NA	NA
AYW49771.1|865192_866605_+	MFS transporter	NA	NA	NA	NA	NA
AYW49772.1|866702_868112_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AYW49773.1|870381_870984_+	VanZ family protein	NA	NA	NA	NA	NA
AYW49774.1|871040_872480_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AYW49775.1|872504_874436_-	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AYW49776.1|874569_875283_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49777.1|875852_877040_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49778.1|878813_879782_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYW49779.1|879959_881102_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
AYW49780.1|881190_881589_+	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA	NA
AYW49781.1|881610_882594_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
AYW49782.1|882607_883207_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA	NA
AYW49783.1|883366_884080_-	hypothetical protein	NA	NA	NA	NA	NA
AYW49784.1|884082_886614_-	ATP-dependent helicase	NA	Q9YNZ9	Choristoneura_fumiferana_nuclear_polyhedrosis_virus	25.3	1.1e-40
AYW49785.1|886804_887779_+|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
AYW49786.1|887956_889207_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	2.4e-110
>prophage 5
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	1036140	1087490	2695908	transposase	Staphylococcus_phage(36.36%)	55	NA	NA
AYW49901.1|1036140_1037499_+|transposase	transposase	transposase	NA	NA	NA	NA
AYW49902.1|1037825_1038416_+	glutamine amidotransferase	NA	NA	NA	NA	NA
AYW49903.1|1038587_1038785_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
AYW51402.1|1038912_1040271_-	MFS transporter	NA	NA	NA	NA	NA
AYW49904.1|1040388_1041081_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49905.1|1041692_1042514_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYW49906.1|1042525_1042945_+	DUF2000 domain-containing protein	NA	NA	NA	NA	NA
AYW49907.1|1043133_1043832_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AYW49908.1|1043813_1044212_-	cytidine deaminase	NA	NA	NA	NA	NA
AYW49909.1|1044216_1044807_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49910.1|1045717_1046797_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	4.6e-49
AYW49911.1|1047258_1047771_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49912.1|1047748_1048147_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49913.1|1048095_1048491_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49914.1|1048554_1049520_-	aldo/keto reductase	NA	NA	NA	NA	NA
AYW49915.1|1049656_1050307_+	KR domain-containing protein	NA	NA	NA	NA	NA
AYW49916.1|1050334_1051438_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49917.1|1051772_1052108_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49918.1|1052186_1052465_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49919.1|1052556_1053243_+	flavodoxin	NA	NA	NA	NA	NA
AYW49920.1|1053295_1053718_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49921.1|1053853_1054330_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49922.1|1054370_1055198_+	KR domain-containing protein	NA	NA	NA	NA	NA
AYW49923.1|1055260_1055905_+	oxidoreductase	NA	NA	NA	NA	NA
AYW49924.1|1056118_1057369_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	1.1e-110
AYW51403.1|1057882_1058626_+	SDR family NAD(P)-dependent oxidoreductase	NA	A0A2P0VP75	Tetraselmis_virus	29.5	5.2e-12
AYW49925.1|1058809_1059208_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYW51404.1|1059506_1060361_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYW49926.1|1060786_1061992_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
AYW49927.1|1062941_1063796_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.0	1.4e-40
AYW49928.1|1063867_1064284_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49929.1|1065269_1065668_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	84.7	9.5e-61
AYW49930.1|1066131_1067871_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
AYW49931.1|1067975_1068269_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	46.2	1.8e-16
AYW49932.1|1068270_1068642_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA	NA
AYW49933.1|1068771_1069137_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	41.3	9.7e-20
AYW49934.1|1069170_1070913_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
AYW49935.1|1070957_1072037_+	arsenical-resistance protein	NA	NA	NA	NA	NA
AYW49936.1|1072468_1072831_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49937.1|1073018_1074341_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.6	3.9e-95
AYW51405.1|1074774_1075026_-	LOG family protein	NA	NA	NA	NA	NA
AYW49938.1|1075148_1076561_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.4	3.9e-16
AYW49939.1|1076562_1077267_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.3	5.3e-38
AYW49940.1|1078169_1078883_+	ABC transporter permease	NA	NA	NA	NA	NA
AYW49941.1|1078879_1079647_+	ABC transporter permease	NA	NA	NA	NA	NA
AYW49942.1|1079654_1079930_+	hypothetical protein	NA	NA	NA	NA	NA
AYW49943.1|1080019_1080613_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49944.1|1080626_1081154_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYW51406.1|1081274_1082597_-	MFS transporter	NA	NA	NA	NA	NA
AYW49945.1|1082747_1083437_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49946.1|1083557_1084250_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AYW49947.1|1084231_1084630_-	cytidine deaminase	NA	NA	NA	NA	NA
AYW49948.1|1084634_1085225_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYW49949.1|1085635_1086070_+	DUF1772 domain-containing protein	NA	NA	NA	NA	NA
AYW49950.1|1086383_1087490_+|transposase	IS4/IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	1281511	1305324	2695908	transposase,protease	Streptococcus_phage(28.57%)	21	NA	NA
AYW50112.1|1281511_1282591_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.0	1.0e-48
AYW50113.1|1282722_1284453_-	adenylate cyclase	NA	NA	NA	NA	NA
AYW50114.1|1285071_1286490_+|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
AYW50115.1|1286689_1287382_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYW50116.1|1287520_1288843_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.4	7.4e-94
AYW50117.1|1289510_1290047_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50118.1|1290033_1290447_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AYW50119.1|1290464_1290785_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AYW50120.1|1290872_1291022_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYW50121.1|1291027_1291285_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50122.1|1291389_1292124_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	50.8	2.1e-66
AYW50123.1|1292464_1293859_+	APC family permease	NA	NA	NA	NA	NA
AYW50124.1|1294673_1295879_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
AYW50125.1|1295973_1297008_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AYW50126.1|1297427_1298132_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	42.0	8.4e-44
AYW50127.1|1298138_1299974_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.1	7.5e-36
AYW50128.1|1299970_1301290_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50129.1|1301294_1302158_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50130.1|1302210_1303017_+	MBL fold metallo-hydrolase	NA	A0A2H4J3R0	uncultured_Caudovirales_phage	37.7	2.5e-36
AYW50131.1|1303065_1303698_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYW50132.1|1303905_1305324_-|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	1323043	1427657	2695908	transposase,terminase,integrase,tRNA,portal,capsid,holin	Lactobacillus_phage(25.58%)	103	1345933:1345992	1388803:1390702
AYW50149.1|1323043_1323508_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AYW50150.1|1323509_1324043_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYW50151.1|1324122_1324656_-	exonuclease	NA	B5WZL1	Staphylococcus_phage	37.6	1.6e-23
AYW51418.1|1325643_1326321_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	41.8	1.6e-36
AYW51419.1|1326237_1327650_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
AYW50152.1|1327718_1328552_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50153.1|1328535_1329897_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW50154.1|1330060_1331419_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW50155.1|1331619_1332750_+	PRD domain-containing protein	NA	NA	NA	NA	NA
AYW50156.1|1333969_1334959_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AYW50157.1|1335164_1336538_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AYW50158.1|1336564_1338196_+	DUF2961 domain-containing protein	NA	NA	NA	NA	NA
AYW51420.1|1338225_1339680_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
AYW50159.1|1341940_1343302_+|transposase	transposase	transposase	NA	NA	NA	NA
AYW50160.1|1343621_1344413_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50161.1|1344649_1345582_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
1345933:1345992	attL	AAGCATAGTGGTAAAGAGTCAAGATAAAAAATGAATTTATTGTTACTCTACCACTAAAAA	NA	NA	NA	NA
AYW50162.1|1346072_1347323_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	6.3e-111
AYW50163.1|1347838_1348450_+	DUF1642 domain-containing protein	NA	NA	NA	NA	NA
AYW50164.1|1348558_1349263_+	nicotinamide mononucleotide transporter PnuC	NA	A0A1W6JK64	Lactococcus_phage	23.1	9.0e-06
AYW50165.1|1349281_1349572_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50166.1|1349933_1350290_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50167.1|1350535_1350736_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50168.1|1350804_1351218_+	autolysin	NA	D2IZL7	Enterococcus_phage	62.2	9.2e-43
AYW50169.1|1351473_1351893_+	hypothetical protein	NA	C9E2P6	Enterococcus_phage	45.9	4.4e-24
AYW50170.1|1351955_1352453_+	HNH endonuclease	NA	A0A1B1P765	Bacillus_phage	45.6	3.1e-08
AYW50171.1|1352449_1352968_+|terminase	terminase small subunit	terminase	A0A0P0ID78	Lactobacillus_phage	38.0	6.0e-15
AYW50172.1|1352967_1354269_+|terminase	PBSX family phage terminase large subunit	terminase	Q5YA76	Bacillus_phage	67.3	5.3e-169
AYW50173.1|1354262_1355816_+|portal	phage portal protein	portal	O03928	Lactobacillus_phage	55.9	7.0e-152
AYW50174.1|1355820_1357002_+|capsid	capsid protein	capsid	O03929	Lactobacillus_phage	53.5	2.4e-91
AYW50175.1|1357118_1357685_+|capsid	capsid protein	capsid	A0A059T7N8	Listeria_phage	42.9	5.2e-12
AYW50176.1|1357697_1358573_+	hypothetical protein	NA	Q6SED2	Lactobacillus_prophage	62.9	6.8e-104
AYW50177.1|1358638_1359040_+	hypothetical protein	NA	A0A2H4JHX8	uncultured_Caudovirales_phage	32.8	3.6e-07
AYW50178.1|1359036_1359384_+|capsid	capsid protein	capsid	O03932	Lactobacillus_phage	50.4	5.4e-28
AYW50179.1|1359383_1359722_+|capsid	capsid protein	capsid	O03933	Lactobacillus_phage	45.9	1.4e-20
AYW50180.1|1359721_1360111_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AYW50181.1|1360127_1360619_+|capsid	capsid protein	capsid	O03972	Lactobacillus_phage	58.0	2.7e-41
AYW50182.1|1360688_1360982_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50183.1|1361549_1362182_+	hypothetical protein	NA	O03936	Lactobacillus_phage	41.2	6.4e-35
AYW50184.1|1362182_1366964_+|capsid	capsid protein	capsid	A0A2P0VJB7	Streptococcus_phage	38.7	5.6e-14
AYW50185.1|1366960_1368445_+	hypothetical protein	NA	Q8LTK1	Lactococcus_phage	26.6	1.2e-15
AYW50186.1|1368441_1371024_+	hypothetical protein	NA	A0A060ADQ4	Enterococcus_phage	25.1	4.1e-11
AYW50187.1|1371035_1373177_+	hypothetical protein	NA	K4JXJ8	Streptococcus_phage	62.4	3.3e-35
AYW50188.1|1373173_1373557_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50189.1|1373686_1374847_+	DUF2479 domain-containing protein	NA	A0A0A1EKZ5	Lactobacillus_phage	29.0	9.7e-05
AYW50190.1|1375128_1375467_+	hypothetical protein	NA	A5GYT0	Lactococcus_phage	39.6	4.3e-14
AYW50191.1|1375481_1375703_+|holin	holin	holin	E7DNC2	Pneumococcus_phage	52.8	1.8e-13
AYW50192.1|1375689_1377018_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0Y4R9	Lactobacillus_phage	54.2	2.9e-45
AYW50193.1|1377085_1377427_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50194.1|1377617_1378763_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	36.1	2.5e-53
AYW50195.1|1379093_1380065_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	65.4	6.0e-117
AYW50196.1|1380175_1380442_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50197.1|1380711_1381617_-	hypothetical protein	NA	O64371	Lactobacillus_phage	53.6	8.6e-25
AYW50198.1|1381618_1381975_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AYW50199.1|1381984_1382338_-	XRE family transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	43.4	2.6e-14
AYW50200.1|1382501_1382753_+	XRE family transcriptional regulator	NA	Q6SEA0	Lactobacillus_prophage	59.7	1.1e-09
AYW50201.1|1382752_1383013_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50202.1|1383087_1383618_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50203.1|1383622_1383841_+	DNA-binding protein	NA	NA	NA	NA	NA
AYW50204.1|1384065_1384620_+	hypothetical protein	NA	E9LUU0	Lactobacillus_phage	37.1	2.2e-23
AYW50205.1|1384621_1385647_+	hypothetical protein	NA	E5DV80	Deep-sea_thermophilic_phage	63.0	2.8e-72
AYW50206.1|1385688_1386150_+	HNH endonuclease	NA	H6WG01	Cyanophage	38.7	6.3e-08
AYW50207.1|1386142_1387030_+	DUF4373 domain-containing protein	NA	F0PII1	Enterococcus_phage	67.9	2.5e-45
AYW50208.1|1387031_1387406_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50209.1|1387444_1387810_+	RusA family crossover junction endodeoxyribonuclease	NA	A8AU00	Listeria_phage	47.1	6.7e-21
AYW50210.1|1388014_1388212_+	XRE family transcriptional regulator	NA	D2IZX1	Enterococcus_phage	56.9	2.3e-15
AYW50211.1|1388208_1388487_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50212.1|1388487_1388829_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50213.1|1388942_1390193_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	6.3e-111
AYW50214.1|1390875_1392141_+	GntP family permease	NA	NA	NA	NA	NA
1388803:1390702	attR	AAGCATAGTGGTAAAGAGTCAAGATAAAAAATGAATTTATTGTTACTCTACCACTAAAAAATAGGCGCACTGAACTAGGCCTATGCAAATCAAGCGTTTTCATAGGCTGTTTCCCTAGCAATGCGCAAATAACTTTTTCGTTATTTTTCTATCACGCTCCTAGGTGGCGTATAGAGTTGGTGGTTCCGTAGTAGCGTATCCACCAAGCGCACAAATTTTCTTGCAGTTAAAACGAGGGCTCTTTTGTGTTGATGTTTCGGTGTTTCTTGATACTTTTTACGATAAAAGGCTTGATATTCGGGCAAATGCCGACTGACAGAATTGGCAGCTTCAATTAAGTAGTAACGGAAATAGCGATTGCCTTTTTTCGTTAAGGGGGTGTTTTCAGCTTCATGACGTCCTGACTGATGCTTGGGCCAAGTGAGCCCGGCATACTTAGCTAAACTGGTTTGATCAGGAAAACGTTCGATTTGACCAATTTCAGCTAACAAGCCAGCGGCGTAAACAGGGCCTACACCAGGAATACTGGTTAAACATTGGTATTCGGGCACCGTTTGGACGAGATCTTCAATCCCTTGGTCACAGTCTTTAACGGCTTTTTCCAAGGAACGAATTTCACGCACAAGGATACCTAAGATTATATCGATCGATTCGCTCATGACTTGATCGAGCCGGTAGGAACTACGGACGGCTCGTTGGATCGTTTTCGCTAACCCTTCGGGGTCTTTAAAGCGGCCGCGCCCTTTGGATTGGAGCCATTCGGCCAAGTCTTTCAAAGGCAGGTTCGCCAAGTCGTCTAAGGACAAGTCTTGGGTGAAAAGATCCATGATGGCGGCACTGAAAACGGTCGTGGAACCTTCGGCTTCACGTAATTCCTTTTTTAGGGTATTGCATTTATACGAAAGATTTTCGATAAAATGTTGTTTCACCTCCACTAATTGCCGCACGATTTGATATCGTGTACGAGTCAATCGTTGAAGGGCCATATATTTTTCTCCTTTGATAGGAGAATTCGTATAGCGTTGAATCCGCAAGTAATCGGCGATCATGAACGCATCGATCGGGTCGGTTTTATCCGCATCAAACATTTTCATATATTGTTTAATTCGATGCGGATTTTCAATGGTGGTAATGGCGTGAATGGCTTGAAGCTGTTCATCTTGGTGAAAATTTACCGCTGGATGATAGCTATACATGGAAGTAGATTCCATACCAATCACAATCTGGTCAAACGAATAGGTTTCGTGAAAGGAGAGAATCTGTTCTTTCAGCTCCCAGGCACCTTGGGTATCATTGCCATAGGTGTGATTTAACAACACCACCATTTCATCGGTTAAATAACATGTATCTAGTTTTTCTGAGCTAACGTCTATACCTACAAATAATTTCACGGGAAGGACCTCCTTTCAAAAAAATTAGGAAAATGCTTCGATACTGTGGGCTTCCCAAGATACACGTTGTGTAATCACAACCTCGTTTACGAGAATATAATGACAAAGGGCAAGAGCTGCTTTTCCACCTTCTACTCAAGGTAGGCTTGTCCAAATGTCGAAACAGATAGTGTGTTGGTAATGATAACAACGGTCTGGGTTGCATGCTTAAACGCGTAGACAGAACTACAGGAGGAAATAGCACAATCCCATGTGGATCCTTTCCACTGACTATTATATCTCAGGAACCACACAATATCGAAACAAGATCCCAAACGCCCTCCGCTCGTTCAAGAATCACGAGCTGCGCGGAGCTCCGCTCCTTGCCTTGGCGAGCAAAGCTCGCTTTAACAAAAGGGAAACATTGTGTTGCTTAAAGCTTTTATTGATGAATGTTATTTATTTTATTTTCAAAGAACCAGAATGTTTGCATCAGAGATGATGCTTATAAATATATTTTACGAGGAGGA	NA	NA	NA	NA
AYW50215.1|1393414_1394146_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50216.1|1394240_1394453_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51421.1|1394445_1395765_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AYW50217.1|1395793_1396795_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AYW50218.1|1396794_1398117_+	alpha-L-fucosidase	NA	NA	NA	NA	NA
AYW50219.1|1398113_1399487_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	29.5	5.6e-44
AYW50220.1|1399502_1400363_+	ROK family protein	NA	NA	NA	NA	NA
AYW50221.1|1400526_1400778_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AYW50222.1|1400778_1401096_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYW50223.1|1401322_1403269_+	PRD domain-containing protein	NA	NA	NA	NA	NA
AYW50224.1|1403286_1403856_+	SIS domain-containing protein	NA	A0A067XQR2	Caulobacter_phage	30.6	4.7e-13
AYW50225.1|1403877_1404147_+	PTS lactose transporter subunit IIB	NA	NA	NA	NA	NA
AYW50226.1|1404164_1405502_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
AYW50227.1|1405515_1407507_+	transketolase	NA	NA	NA	NA	NA
AYW50228.1|1407725_1408091_-	reverse transcriptase	NA	NA	NA	NA	NA
AYW50229.1|1408135_1408996_-	group II intron reverse transcriptase/maturase	NA	D4HTV9	Vibrio_phage	29.8	1.7e-14
AYW50230.1|1409066_1409267_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50231.1|1409619_1410477_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYW50232.1|1410679_1411546_+	glucose transporter GlcU	NA	NA	NA	NA	NA
AYW50233.1|1411657_1412671_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AYW50234.1|1412791_1413508_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
AYW50235.1|1413746_1413884_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50236.1|1414777_1415065_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
AYW50237.1|1415061_1415310_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AYW50238.1|1415500_1416229_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50239.1|1416310_1417570_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	25.5	9.8e-27
AYW50240.1|1417849_1418521_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50241.1|1418591_1419950_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW50242.1|1420334_1421489_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	A0A218MNE0	uncultured_virus	29.7	4.7e-44
AYW50243.1|1421605_1422529_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYW50244.1|1422828_1423101_+	chorismate mutase	NA	NA	NA	NA	NA
AYW50245.1|1423164_1424607_+	sodium:sulfate symporter	NA	NA	NA	NA	NA
AYW50246.1|1424738_1426100_+|transposase	transposase	transposase	NA	NA	NA	NA
AYW50247.1|1426298_1427657_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	1817128	1867914	2695908	integrase,transposase,protease	Staphylococcus_phage(23.53%)	40	1814634:1814651	1849101:1849118
1814634:1814651	attL	ATTTATTATTTCATTTGC	NA	NA	NA	NA
AYW50570.1|1817128_1818535_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.6	5.9e-41
AYW50571.1|1818539_1819085_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AYW50572.1|1819116_1820013_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.1	1.0e-33
AYW50573.1|1820201_1822280_-	type I DNA topoisomerase	NA	A0A2K9L1Q2	Tupanvirus	38.5	1.5e-101
AYW50574.1|1822413_1823292_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AYW50575.1|1823352_1824120_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	40.3	1.7e-26
AYW50576.1|1824120_1824969_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
AYW50577.1|1825064_1826588_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	25.1	2.2e-25
AYW50578.1|1826690_1826921_-	hypothetical protein	NA	A0A1X9IGE0	Lactococcus_phage	43.2	1.2e-10
AYW50579.1|1830610_1831648_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AYW50580.1|1831673_1832612_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AYW50581.1|1833109_1833655_-	signal peptidase I	NA	NA	NA	NA	NA
AYW50582.1|1833680_1835093_-	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	29.0	7.3e-23
AYW50583.1|1835120_1835342_-	YozE family protein	NA	NA	NA	NA	NA
AYW50584.1|1835338_1835854_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AYW51438.1|1835864_1836512_-	DUF2140 domain-containing protein	NA	NA	NA	NA	NA
AYW50585.1|1836505_1837396_-	lipase	NA	NA	NA	NA	NA
AYW50586.1|1837625_1838474_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	38.3	8.6e-19
AYW50587.1|1838593_1839661_-	oxidoreductase	NA	NA	NA	NA	NA
AYW50588.1|1839893_1840547_+	hemolysin III	NA	NA	NA	NA	NA
AYW50589.1|1840628_1841078_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AYW50590.1|1841359_1841848_-	dihydrofolate reductase	NA	A0A1B2IBQ4	Erwinia_phage	36.5	6.9e-21
AYW50591.1|1841864_1842812_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	63.4	2.1e-119
AYW50592.1|1842831_1844712_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.5	1.3e-51
AYW50593.1|1844922_1847058_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AYW50594.1|1847361_1848642_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
AYW50595.1|1848755_1849565_-	ABC transporter permease	NA	NA	NA	NA	NA
1849101:1849118	attR	GCAAATGAAATAATAAAT	NA	NA	NA	NA
AYW50596.1|1849592_1850651_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	3.2e-15
AYW50597.1|1851052_1851448_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	37.0	2.7e-15
AYW50598.1|1851964_1853215_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	1.1e-110
AYW50599.1|1853435_1853918_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYW50600.1|1854011_1854620_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.6	1.1e-68
AYW50601.1|1854708_1855023_-	GtrA family protein	NA	NA	NA	NA	NA
AYW50602.1|1855159_1855588_-	GtrA family protein	NA	NA	NA	NA	NA
AYW50603.1|1855877_1856984_-|transposase	IS4/IS5 family transposase	transposase	NA	NA	NA	NA
AYW50604.1|1857126_1859676_-	hypothetical protein	NA	L0P6H6	Lactobacillus_phage	30.0	1.7e-09
AYW50605.1|1859965_1860763_+	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
AYW50606.1|1860841_1861795_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AYW50607.1|1861825_1862767_-	glycosyltransferase	NA	V5USA4	Oenococcus_phage	50.0	2.2e-79
AYW50608.1|1866495_1867914_-|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2032240	2104915	2695908	transposase,head,tail,terminase,plate,integrase,portal,capsid,protease,holin	Listeria_phage(34.15%)	91	2027866:2027882	2110217:2110233
2027866:2027882	attL	TTATCCAACATATTAGA	NA	NA	NA	NA
AYW50750.1|2032240_2033599_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW50751.1|2033735_2034074_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AYW50752.1|2034161_2034455_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50753.1|2034582_2035215_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.1	5.2e-45
AYW50754.1|2035259_2035967_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYW50755.1|2036587_2036821_-	DUF2969 domain-containing protein	NA	NA	NA	NA	NA
AYW50756.1|2037020_2037296_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	53.8	1.2e-19
AYW50757.1|2037438_2037618_-	DNA-directed RNA polymerase subunit beta	NA	NA	NA	NA	NA
AYW50758.1|2037633_2038923_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AYW50759.1|2039014_2039248_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50760.1|2039734_2040157_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
AYW50761.1|2040170_2041577_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
AYW50762.1|2041603_2042500_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
AYW50763.1|2042519_2044067_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
AYW50764.1|2044085_2044628_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
AYW50765.1|2044614_2045145_-	ATP synthase F0 subunit B	NA	NA	NA	NA	NA
AYW50766.1|2045244_2045454_-	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
AYW50767.1|2045484_2046201_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
AYW50768.1|2046489_2046948_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	58.5	5.4e-44
AYW50769.1|2046971_2049290_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.5	6.3e-96
AYW50770.1|2049292_2050048_-	carboxylesterase	NA	NA	NA	NA	NA
AYW50771.1|2050124_2050361_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AYW50772.1|2050748_2052050_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	83.3	4.2e-206
AYW50773.1|2052146_2052902_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AYW50774.1|2052943_2054134_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYW50775.1|2054251_2055253_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYW50776.1|2055291_2056329_-	SorC family transcriptional regulator	NA	NA	NA	NA	NA
AYW50777.1|2056604_2057933_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
AYW50778.1|2058403_2058583_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50779.1|2058632_2058863_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50780.1|2059280_2059667_-	hypothetical protein	NA	A8ATC1	Listeria_phage	54.5	3.5e-28
AYW50781.1|2059663_2060179_-	DUF4065 domain-containing protein	NA	A8ATC0	Listeria_phage	52.9	1.2e-47
AYW50782.1|2060382_2061630_-	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC8	Lactobacillus_phage	55.7	4.6e-45
AYW50783.1|2061616_2061838_-|holin	holin	holin	E7DNC2	Pneumococcus_phage	52.8	1.8e-13
AYW50784.1|2061852_2062191_-	hypothetical protein	NA	A5GYT0	Lactococcus_phage	39.6	7.4e-14
AYW50785.1|2062270_2062483_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50786.1|2062484_2063708_-|plate	phage baseplate upper protein	plate	NA	NA	NA	NA
AYW50787.1|2063880_2065206_-	DUF2479 domain-containing protein	NA	NA	NA	NA	NA
AYW50788.1|2065172_2066195_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50789.1|2066195_2067218_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	48.7	9.8e-86
AYW50790.1|2067226_2068051_-|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	45.3	1.3e-51
AYW50791.1|2068068_2073672_-	hypothetical protein	NA	A0A2H4JDQ9	uncultured_Caudovirales_phage	48.9	2.4e-72
AYW50792.1|2073870_2074182_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50793.1|2074246_2074498_-	collagen-like protein	NA	NA	NA	NA	NA
AYW50794.1|2074569_2075157_-|tail	phage tail protein	tail	NA	NA	NA	NA
AYW50795.1|2075200_2075608_-	hypothetical protein	NA	A0A059T681	Listeria_phage	42.1	2.0e-18
AYW50796.1|2075604_2076015_-	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	45.8	5.8e-21
AYW50797.1|2076001_2076391_-|head,tail	phage head-tail adapter protein	head,tail	A8ATA1	Listeria_phage	58.1	3.1e-32
AYW50798.1|2076380_2076650_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A059T7R0	Listeria_phage	50.0	2.9e-13
AYW50799.1|2076709_2077849_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	61.1	4.0e-128
AYW50800.1|2077873_2078620_-|protease	Clp protease ClpP	protease	A0A1S5SFF8	Streptococcus_phage	56.0	1.8e-68
AYW51442.1|2078579_2079713_-|portal	phage portal protein	portal	A0A2P0ZLC9	Lactobacillus_phage	50.3	1.4e-96
AYW50801.1|2079800_2081471_-|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	53.2	2.3e-169
AYW50802.1|2081467_2081812_-	hypothetical protein	NA	E2ELI1	Clostridium_phage	39.8	1.8e-12
AYW50803.1|2081944_2082277_-	HNH endonuclease	NA	Q4ZD22	Staphylococcus_phage	60.8	6.8e-20
AYW50804.1|2082487_2082676_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50805.1|2082653_2083004_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50806.1|2083102_2083267_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50807.1|2083257_2084451_-	hypothetical protein	NA	A0A097BYC5	Leuconostoc_phage	45.2	1.7e-84
AYW50808.1|2085344_2085767_-	DUF1492 domain-containing protein	NA	A0A218MNE1	uncultured_virus	39.8	2.3e-20
AYW50809.1|2085767_2086013_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50810.1|2086009_2086480_-	DUF3310 domain-containing protein	NA	Q8W5V5	Listeria_phage	58.5	5.1e-13
AYW50811.1|2086476_2086707_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50812.1|2086703_2087018_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50813.1|2087180_2087369_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50814.1|2087405_2087654_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50815.1|2087646_2087838_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50816.1|2087842_2088244_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50817.1|2088246_2088885_-	DUF1642 domain-containing protein	NA	A0A0B5D0I5	Listeria_phage	34.4	9.3e-10
AYW50818.1|2088884_2089214_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50819.1|2089210_2089405_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50820.1|2089404_2089716_-	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	59.2	1.2e-26
AYW50821.1|2089705_2090041_-	VRR-NUC domain-containing protein	NA	A0A2P0ZLB6	Lactobacillus_phage	65.7	1.5e-35
AYW50822.1|2090328_2092659_-	DNA primase	NA	R4IBW2	Listeria_phage	51.7	7.2e-225
AYW50823.1|2092672_2093188_-	DUF669 domain-containing protein	NA	Q8W5V8	Listeria_phage	45.3	4.1e-32
AYW50824.1|2093202_2094711_-	ATP-dependent helicase	NA	A0A0P0ID30	Lactobacillus_phage	52.4	3.7e-105
AYW50825.1|2094670_2095387_-	DNA-binding protein	NA	A0A059T7T3	Listeria_phage	70.5	5.4e-91
AYW50826.1|2095386_2095869_-	hypothetical protein	NA	E5DV79	Deep-sea_thermophilic_phage	50.3	1.2e-30
AYW50827.1|2095852_2096098_-	hypothetical protein	NA	A0A0S2MYD6	Enterococcus_phage	48.0	4.5e-13
AYW50828.1|2096437_2096716_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50829.1|2096852_2097137_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	43.6	1.8e-13
AYW50830.1|2097126_2097312_-	hypothetical protein	NA	NA	NA	NA	NA
AYW50831.1|2097527_2097755_-	hypothetical protein	NA	A0A1P8BLF6	Lactococcus_phage	66.7	9.3e-21
AYW50832.1|2097935_2098631_+	XRE family transcriptional regulator	NA	D7RWL5	Brochothrix_phage	47.0	1.1e-43
AYW50833.1|2098768_2099077_+	hypothetical protein	NA	NA	NA	NA	NA
AYW50834.1|2099108_2099792_+	hypothetical protein	NA	A0A097BY93	Leuconostoc_phage	63.6	1.7e-12
AYW50835.1|2099954_2101106_+|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	29.2	6.2e-28
AYW50836.1|2101395_2102001_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
AYW50837.1|2102085_2102523_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
AYW50838.1|2102757_2103573_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AYW50839.1|2103556_2104915_+	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	33.7	1.2e-25
2110217:2110233	attR	TTATCCAACATATTAGA	NA	NA	NA	NA
>prophage 10
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2283617	2306835	2695908	transposase,integrase	Bacillus_phage(80.0%)	20	2282820:2282835	2309446:2309461
2282820:2282835	attL	TATCACAAGTTTTAAA	NA	NA	NA	NA
AYW51449.1|2283617_2284739_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	28.4	1.0e-35
AYW51450.1|2284755_2284929_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
AYW51007.1|2285340_2286513_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYW51008.1|2286989_2287172_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51009.1|2287274_2287487_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51010.1|2287661_2289110_+	DDE domain-containing protein	NA	NA	NA	NA	NA
AYW51011.1|2290147_2291289_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.2	3.0e-75
AYW51012.1|2291805_2292912_+|transposase	IS4/IS5 family transposase	transposase	NA	NA	NA	NA
AYW51013.1|2293360_2293759_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51014.1|2294003_2294507_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51015.1|2294499_2295153_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51016.1|2295145_2295784_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.2	1.2e-12
AYW51017.1|2296155_2297445_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AYW51018.1|2298089_2299544_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51019.1|2299649_2301059_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AYW51020.1|2301134_2302538_-	DUF4135 domain-containing protein	NA	NA	NA	NA	NA
AYW51021.1|2302832_2303971_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.8	3.9e-75
AYW51022.1|2304070_2304361_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51023.1|2305114_2305543_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51024.1|2305693_2306835_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.2	3.0e-75
2309446:2309461	attR	TTTAAAACTTGTGATA	NA	NA	NA	NA
>prophage 11
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2310619	2383698	2695908	tRNA,transposase,integrase	Bacillus_phage(40.0%)	57	2299546:2299605	2385433:2387028
2299546:2299605	attL	TATTTAGTGTCTGCTGATTAACACGTAAATTTTCATCCAAGCAAAATTTCTGCCGGATTT	NA	NA	NA	NA
AYW51028.1|2310619_2311761_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.2	3.0e-75
AYW51029.1|2311839_2312283_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51030.1|2313136_2313334_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51031.1|2313479_2314838_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW51032.1|2314969_2315779_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51033.1|2315971_2317333_+|transposase	transposase	transposase	NA	NA	NA	NA
AYW51451.1|2317629_2318568_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51034.1|2319326_2320451_+|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	30.9	2.6e-39
AYW51035.1|2327213_2328680_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.9	6.2e-25
AYW51036.1|2328676_2329363_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	31.2	2.2e-28
AYW51037.1|2329514_2330936_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	NA	V5UT40	Synechococcus_phage	29.8	1.1e-31
AYW51038.1|2331096_2332173_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51039.1|2332162_2333269_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
AYW51040.1|2334002_2335361_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW51041.1|2335425_2336868_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AYW51042.1|2336932_2338246_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.5	1.6e-64
AYW51043.1|2338343_2338526_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AYW51044.1|2338579_2339149_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51045.1|2339302_2341069_-	pyruvate kinase	NA	NA	NA	NA	NA
AYW51046.1|2341131_2342094_-	6-phosphofructokinase	NA	NA	NA	NA	NA
AYW51047.1|2342256_2345583_-	DNA polymerase III subunit alpha	NA	A0A0K1Y906	Streptomyces_phage	30.7	4.1e-141
AYW51048.1|2345698_2345881_+	DUF2929 domain-containing protein	NA	NA	NA	NA	NA
AYW51049.1|2346012_2347449_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	28.4	5.5e-42
AYW51050.1|2347703_2348507_+	HAD family phosphatase	NA	NA	NA	NA	NA
AYW51051.1|2349171_2350278_-|transposase	IS4/IS5 family transposase	transposase	NA	NA	NA	NA
AYW51052.1|2350394_2350928_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYW51053.1|2351236_2351998_+	threonine/serine exporter	NA	NA	NA	NA	NA
AYW51054.1|2351994_2352438_+	threonine/serine exporter	NA	NA	NA	NA	NA
AYW51055.1|2352539_2353136_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	38.7	4.0e-31
AYW51056.1|2353557_2354904_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYW51057.1|2354990_2356340_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AYW51058.1|2356569_2357055_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AYW51452.1|2357051_2357804_-	type I 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AYW51059.1|2357867_2359037_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	45.3	2.6e-90
AYW51060.1|2359254_2361402_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	54.7	2.5e-200
AYW51061.1|2361519_2362269_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51062.1|2362252_2362741_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51063.1|2362870_2364316_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	29.7	2.0e-31
AYW51064.1|2364315_2365038_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.0	5.2e-33
AYW51065.1|2365443_2366766_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	43.0	1.1e-94
AYW51066.1|2368222_2368690_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AYW51067.1|2368707_2370057_-	PFL family protein	NA	NA	NA	NA	NA
AYW51068.1|2370067_2370337_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AYW51069.1|2370499_2370934_-	universal stress protein	NA	NA	NA	NA	NA
AYW51070.1|2371073_2371598_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AYW51071.1|2371584_2372322_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AYW51072.1|2372353_2373415_+	ammonia monooxygenase	NA	NA	NA	NA	NA
AYW51073.1|2373790_2374891_+	cation transporter	NA	NA	NA	NA	NA
AYW51074.1|2375185_2375719_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
AYW51075.1|2375711_2377244_-	citrate lyase subunit alpha	NA	NA	NA	NA	NA
AYW51076.1|2377246_2378134_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
AYW51077.1|2378121_2378430_-	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
AYW51078.1|2378440_2379442_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
AYW51079.1|2379907_2380603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYW51080.1|2380595_2381459_+	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
AYW51081.1|2381512_2382808_-	damage-inducible protein CinA	NA	NA	NA	NA	NA
AYW51082.1|2383242_2383698_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	34.9	1.1e-17
2385433:2387028	attR	TATTTAGTGTCTGCTGATTAACACGTAAATTTTCATCCAAGCAAAATTTCTGCCGGATTTTTCACCAAATGTTGATTTATTTTAGCCAAAAATAGCGCTCATTCTTAAACTACATAAAGGACAAAAAACGTGCCAGTAGGAAGAGCGAATAGATTCGTCACCAATACCGATAAAGCGATACTGCTCATGACAGTCTCTGGCAGTTTCGTCATGATGAGGCCCATGCCGTTGCACCGTTTGGCCAGACTGAAAAAACGTTCGACCTCGATCCGGTCGGCGTTGTCTTGTTGGCTTATTTGCTTATCTTGGGGCTCCTTGGCCGGTCGTCCTAGTTTGGGTCCTGACATTCGAATCCCATGTTCTTTACAATAAGCCCGATTTTTCTTGGTCCGATAGATCTGATCGACGAGGATCCGTTCGGGATAGAAACCCGTTCGTTCTTTGTAATTTTCCACCGCTTCTTCCAGCACAGTACTTTCATTGTAGGCGTCAAAAGAAAGCTTTTCGATCCGGGCAAAGCCGTTTGTATCGAGGCTTACATCAAATTTCGTCCCAAATTCTGTCTTGGCTTTGGCCTTCCCACGGATAATGGGACGCAAGAAAGGCTGGCTCAAACTGATGATCCGATGATCGACCTGATGCGTATGATGATCGAACATATATTGTTGTTGGGCAACCAATTGGGTAATGATCAGATATTTGTTGGTAAATTTAGGCGCCAAGGCATAGCCGTCTTGCATGTAATCCGCTAGATAGCGCAGATCGCGCGCCACATAGCCCAGTTGCTTTCGTACGGTGGCTCGGATTTTTTTCGCTCCGGGACGTTTGGTTTTGGCAAAAGCCAGATATTCTTTGTGGGCCACTCGACGATAGGTCCGTGGCTTTTTTTCAAAGCCGTATTGCTTGTGAAACCAGTCGATCATGCCTTCTAATTGCGTGCGTGCTTCATTCAGTAATGAGGTATCTCGCGGAAAACGTACATTGGAAGGAGCACAGGTCGCATCCAAGATCTCGGTCCCGACATTTTCTTTGGTTTCCACAGGAAGAGGCGCCCCATCGTTGACTTCTTCCAAAGCGGACAAAATCAACGCATTGGCCTCTTGCATAAATGCCACATTCAACCGCTTGCGAAAGCCTACCAGACTCGAAGAATCAAAAGGTTTCTTGGACTGAAAAGCAGGTAAGCCGATGAAAAACTGCAAGTAGGGATTTTCAGTCAACTCTTGCACAAGTTTGGCATCGGAAAGTTGCTTTTTGGCTTGAATGATCAAAGCACCCAATACCATCCGCAGCGGTTTAGCGACGTTGCCGACCTTAGCCGGGAACATTCGGGCATAGGATCGTTCTAAAGTGTGCCAAGGGATCAACTCTGCACGTTGGATCCATTCATTCTTGGAATCTAACGCAAACCCATAGGCTTGATTAAAATCATAGAAGGAAATTTGGCTCATTTCGGTTATTTTATACATAAGGTTACCTCTCCAAGTGCAAAGAAATTTAAGTAAATCATCCATTACCCATGCACTTATTATACTATAAAATAACTAAAAAGAGTATTATATCAATAGTTATTAATTAATCAGTAGACACTATTTA	NA	NA	NA	NA
>prophage 12
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2407487	2466815	2695908	tRNA,transposase,protease	Klosneuvirus(20.0%)	57	NA	NA
AYW51109.1|2407487_2410280_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	27.1	4.7e-90
AYW51110.1|2410405_2411695_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AYW51111.1|2412424_2413186_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
AYW51112.1|2413205_2413988_-	RNA-binding protein	NA	NA	NA	NA	NA
AYW51113.1|2414003_2414237_-	YggT family protein	NA	NA	NA	NA	NA
AYW51114.1|2414291_2414918_-	DUF552 domain-containing protein	NA	NA	NA	NA	NA
AYW51115.1|2414932_2415607_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AYW51116.1|2415621_2416857_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AYW51117.1|2416880_2418209_-	cell division protein FtsA	NA	NA	NA	NA	NA
AYW51118.1|2418379_2419297_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AYW51119.1|2419414_2420506_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AYW51120.1|2420502_2421882_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AYW51121.1|2421920_2422886_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AYW51122.1|2422935_2425146_-	cell division protein FtsI	NA	NA	NA	NA	NA
AYW51123.1|2425146_2425554_-	cell division protein FtsL	NA	NA	NA	NA	NA
AYW51124.1|2425559_2426513_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
AYW51125.1|2426526_2426958_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AYW51126.1|2427129_2427498_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
AYW51127.1|2427612_2428569_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
AYW51128.1|2428645_2428762_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
AYW51129.1|2428814_2430497_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AYW51130.1|2430510_2430963_-	arginine repressor	NA	NA	NA	NA	NA
AYW51131.1|2431126_2431942_-	TlyA family rRNA (cytidine-2'-O)-methyltransferase	NA	NA	NA	NA	NA
AYW51132.1|2431938_2432835_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AYW51133.1|2432831_2433053_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AYW51134.1|2433033_2434380_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	31.0	2.8e-32
AYW51135.1|2434383_2435235_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	40.5	1.3e-43
AYW51136.1|2435304_2435754_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
AYW51137.1|2435746_2436172_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
AYW51138.1|2436272_2437337_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
AYW51139.1|2437531_2438074_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51140.1|2438066_2439059_-	UPF0365 family protein	NA	NA	NA	NA	NA
AYW51141.1|2439048_2439675_-	hydrolase	NA	NA	NA	NA	NA
AYW51142.1|2440010_2441372_+|transposase	transposase	transposase	NA	NA	NA	NA
AYW51143.1|2441507_2441894_-	DUF956 domain-containing protein	NA	NA	NA	NA	NA
AYW51144.1|2442023_2442938_-	PTS mannose family transporter subunit IID	NA	NA	NA	NA	NA
AYW51145.1|2442963_2443779_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AYW51146.1|2443810_2444815_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AYW51147.1|2444843_2445338_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
AYW51148.1|2445522_2448324_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
AYW51149.1|2448460_2449024_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	40.6	1.5e-24
AYW51150.1|2449088_2449382_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AYW51151.1|2449395_2449734_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AYW51152.1|2449757_2450066_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AYW51153.1|2450739_2451423_-	O-methyltransferase	NA	NA	NA	NA	NA
AYW51154.1|2451454_2452486_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
AYW51155.1|2452488_2453043_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51156.1|2454312_2455008_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51157.1|2455169_2456492_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.3	2.6e-94
AYW51158.1|2456631_2457027_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51159.1|2457140_2458502_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW51160.1|2458698_2459304_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	33.5	2.2e-16
AYW51161.1|2459674_2460520_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AYW51162.1|2460591_2461212_-	adenylate kinase	NA	A0A2K9L833	Tupanvirus	34.4	2.8e-11
AYW51163.1|2461537_2462743_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
AYW51164.1|2462930_2465048_-	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	30.2	7.3e-59
AYW51165.1|2465564_2466815_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	1.1e-110
>prophage 13
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2474661	2483204	2695908		Streptococcus_phage(66.67%)	8	NA	NA
AYW51171.1|2474661_2476857_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	65.6	7.8e-282
AYW51172.1|2476881_2477484_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.0	5.1e-50
AYW51173.1|2477937_2479065_-	DNA polymerase IV	NA	NA	NA	NA	NA
AYW51174.1|2479118_2479985_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	58.7	7.8e-84
AYW51175.1|2480050_2480407_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	62.2	1.1e-07
AYW51176.1|2481246_2482179_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	35.0	3.2e-35
AYW51177.1|2482221_2482554_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51178.1|2482550_2483204_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	53.7	8.3e-54
>prophage 14
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2595961	2605933	2695908	transposase	Lactobacillus_phage(42.86%)	7	NA	NA
AYW51282.1|2595961_2597731_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.9	9.8e-49
AYW51283.1|2597727_2599440_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	21.8	1.4e-07
AYW51284.1|2599669_2601139_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	38.4	8.9e-80
AYW51285.1|2601538_2602861_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	43.0	1.5e-94
AYW51286.1|2603163_2603868_+	deoxynucleoside kinase	NA	A0A2K9VCW4	Lactobacillus_phage	46.9	2.3e-49
AYW51287.1|2604067_2604676_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	52.8	4.1e-55
AYW51288.1|2604694_2605933_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	61.3	2.4e-62
>prophage 15
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2615306	2623708	2695908		Bacillus_phage(50.0%)	7	NA	NA
AYW51297.1|2615306_2617169_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.1	3.7e-38
AYW51298.1|2617158_2618898_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.0	5.6e-41
AYW51299.1|2619124_2619829_-	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	30.9	2.4e-22
AYW51300.1|2619935_2620409_-	SUF system NifU family Fe-S cluster assembly protein	NA	A0A2H4N7M4	Lake_Baikal_phage	28.5	4.5e-09
AYW51301.1|2620395_2621631_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	48.1	5.3e-110
AYW51302.1|2621627_2622920_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
AYW51303.1|2622934_2623708_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	25.1	1.2e-06
>prophage 16
CP027768	Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome	2695908	2637273	2685772	2695908	tRNA,transposase,lysis	Bacillus_virus(13.33%)	42	NA	NA
AYW51316.1|2637273_2639286_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.6	1.8e-99
AYW51317.1|2639464_2639737_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51318.1|2639819_2640641_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	33.6	7.0e-26
AYW51319.1|2640726_2642088_-	magnesium transporter	NA	NA	NA	NA	NA
AYW51320.1|2642733_2643732_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	44.6	1.4e-60
AYW51321.1|2643798_2644758_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	2.2e-23
AYW51322.1|2644754_2645813_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.3	1.1e-18
AYW51323.1|2645815_2646859_-	ABC transporter permease	NA	NA	NA	NA	NA
AYW51324.1|2646858_2647800_-	ABC transporter permease	NA	NA	NA	NA	NA
AYW51325.1|2647889_2648225_+	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
AYW51326.1|2648295_2649960_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYW51327.1|2650169_2651795_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYW51328.1|2651823_2652531_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
AYW51329.1|2652722_2655155_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.1	1.8e-85
AYW51330.1|2655239_2656046_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYW51331.1|2656563_2657814_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.3	7.0e-110
AYW51332.1|2657952_2658588_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.4	1.3e-24
AYW51333.1|2658600_2659242_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYW51334.1|2660002_2660641_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51335.1|2660654_2660879_+	hypothetical protein	NA	NA	NA	NA	NA
AYW51336.1|2661040_2662402_-|transposase	transposase	transposase	NA	NA	NA	NA
AYW51337.1|2662573_2663677_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	32.1	5.4e-21
AYW51338.1|2663801_2664173_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AYW51339.1|2664330_2664786_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	34.9	1.1e-17
AYW51340.1|2664997_2667073_-	DNA topoisomerase 3	NA	NA	NA	NA	NA
AYW51341.1|2667005_2667383_-	DUF1033 domain-containing protein	NA	NA	NA	NA	NA
AYW51342.1|2667511_2668633_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AYW51343.1|2668927_2669266_-	cysteine desulfurase	NA	NA	NA	NA	NA
AYW51344.1|2669308_2670466_-	cysteine desulfurase	NA	H7BUW1	unidentified_phage	38.8	4.0e-35
AYW51345.1|2670553_2671525_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	30.5	1.4e-36
AYW51346.1|2671588_2672128_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51347.1|2672382_2674269_+	peptidase M13	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.3	3.1e-77
AYW51348.1|2674311_2675004_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AYW51349.1|2675028_2675310_-	hypothetical protein	NA	NA	NA	NA	NA
AYW51350.1|2675313_2675883_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AYW51351.1|2676071_2676749_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
AYW51352.1|2676803_2678003_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	26.7	3.5e-34
AYW51353.1|2678059_2679442_-	amino acid permease	NA	NA	NA	NA	NA
AYW51458.1|2679597_2681136_-	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA	NA
AYW51354.1|2681233_2683894_-	ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.3	1.6e-66
AYW51355.1|2683890_2684256_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYW51356.1|2684413_2685772_-|transposase	transposase	transposase	NA	NA	NA	NA
