The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	13280	55047	2365672	terminase,bacteriocin,protease,tRNA,transposase,integrase	Lactococcus_phage(83.87%)	45	34907:34934	49836:49863
AYV51790.1|13280_15272_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
AYV51791.1|15273_15909_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	3.9e-24
AYV51792.1|16109_16580_+	hypothetical protein	NA	A0A097BYE2	Leuconostoc_phage	30.1	4.0e-10
AYV51793.1|16597_17164_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AYV51794.1|17164_20650_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AYV51795.1|20809_21280_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51796.1|21350_21668_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
AYV51797.1|21696_22071_+	septum formation initiator family protein	NA	NA	NA	NA	NA
AYV51798.1|22070_22394_+	RNA-binding protein	NA	NA	NA	NA	NA
AYV51799.1|22531_23881_+	serine hydrolase	NA	NA	NA	NA	NA
AYV51800.1|23877_25149_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AYV51801.1|25129_25681_+	hypoxanthine-guanine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	29.7	1.8e-09
AYV51802.1|25886_27974_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	G8DDJ2	Micromonas_pusilla_virus	49.2	5.4e-107
AYV51803.1|30921_32859_+	transcription antiterminator	NA	NA	NA	NA	NA
AYV51804.1|32906_33338_+	PTS mannitol transporter subunit IIA	NA	NA	NA	NA	NA
AYV51805.1|33475_34633_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
34907:34934	attL	CATACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
AYV51806.1|35515_35839_-	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	100.0	3.8e-52
AYV51807.1|35863_36274_-	DUF722 domain-containing protein	NA	Q9AZI2	Lactococcus_phage	100.0	8.0e-71
AYV51808.1|36270_36714_-|terminase	terminase small subunit	terminase	Q9AZI3	Lactococcus_phage	100.0	7.3e-62
AYV51809.1|36846_37428_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	100.0	2.0e-99
AYV51810.1|37663_39292_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	100.0	0.0e+00
AYV51811.1|39302_40097_-	hypothetical protein	NA	Q9AZI6	Lactococcus_phage	100.0	5.4e-156
AYV51812.1|40100_40430_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	100.0	5.2e-57
AYV51813.1|40416_40611_-	hypothetical protein	NA	Q9AZI8	Lactococcus_phage	100.0	2.3e-28
AYV51814.1|40607_40862_-	hypothetical protein	NA	Q9AZI9	Lactococcus_phage	100.0	1.5e-40
AYV51815.1|40858_41098_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	100.0	1.6e-39
AYV51816.1|41140_41422_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	100.0	8.5e-48
AYV51817.1|41418_41670_-	XRE family transcriptional regulator	NA	Q9AZJ2	Lactococcus_phage	100.0	1.7e-39
AYV51818.1|41666_42188_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	100.0	1.5e-93
AYV51819.1|42191_42386_-	DUF1655 domain-containing protein	NA	Q9AZJ4	Lactococcus_phage	100.0	7.9e-29
AYV51820.1|42461_43202_-	hypothetical protein	NA	Q9AZJ5	Lactococcus_phage	100.0	4.1e-134
AYV53968.1|43230_43407_-	hypothetical protein	NA	Q9AZJ6	Lactococcus_phage	100.0	2.2e-22
AYV51821.1|43688_44075_+	XRE family transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	100.0	7.3e-66
AYV51822.1|44084_44639_+	hypothetical protein	NA	Q9AZJ8	Lactococcus_phage	100.0	8.1e-111
AYV51823.1|44749_44980_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	100.0	3.7e-17
AYV51824.1|45052_45247_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	100.0	6.0e-29
AYV51825.1|45398_45641_+	hypothetical protein	NA	Q9AZK2	Lactococcus_phage	100.0	4.6e-34
AYV51826.1|45776_46001_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	100.0	4.5e-36
AYV51827.1|47369_47585_+	hypothetical protein	NA	Q9AZK5	Lactococcus_phage	100.0	5.5e-31
AYV51828.1|47701_47866_+|bacteriocin	bacteriocin	bacteriocin	Q9AZK6	Lactococcus_phage	100.0	7.9e-22
AYV51829.1|47987_48293_+|bacteriocin	bacteriocin immunity protein	bacteriocin	Q9AZK7	Lactococcus_phage	100.0	8.3e-49
AYV51830.1|48542_49727_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	100.0	1.9e-226
AYV51831.1|50179_50629_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
49836:49863	attR	CATACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
AYV51832.1|50705_50948_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
AYV51833.1|53899_55047_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.6	1.9e-45
>prophage 2
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	67263	111030	2365672	transposase,bacteriocin,tRNA,protease	Bacillus_phage(44.44%)	46	NA	NA
AYV51844.1|67263_68289_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AYV51845.1|68790_69228_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AYV51846.1|69388_70702_+	APC family permease	NA	NA	NA	NA	NA
AYV51847.1|70761_71112_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51848.1|71170_72166_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AYV51849.1|72268_73081_-	HAD family hydrolase	NA	NA	NA	NA	NA
AYV51850.1|73206_74844_-	ABC-F family ATPase	NA	A0A2K9L3Z8	Tupanvirus	25.9	5.3e-49
AYV51851.1|75971_77252_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	A0A2I2L687	Orpheovirus	26.9	1.4e-09
AYV51852.1|77478_78312_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYV51853.1|78712_79180_+	universal stress protein	NA	NA	NA	NA	NA
AYV51854.1|79308_79506_+	DUF4649 domain-containing protein	NA	NA	NA	NA	NA
AYV51855.1|79536_80157_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYV51856.1|80207_81377_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
AYV51857.1|81387_81978_+	flavin reductase family protein	NA	NA	NA	NA	NA
AYV51858.1|82575_84723_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	26.5	7.2e-38
AYV51859.1|84737_86159_+	HlyD family secretion protein	NA	NA	NA	NA	NA
AYV51860.1|86252_86378_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51861.1|86619_87072_+	transporter	NA	NA	NA	NA	NA
AYV51862.1|87110_87767_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYV51863.1|87869_88151_-	hypothetical protein	NA	NA	NA	NA	NA
AYV51864.1|88160_88313_-	hypothetical protein	NA	NA	NA	NA	NA
AYV51865.1|88651_88870_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51866.1|88963_89101_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AYV51867.1|89115_89826_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYV51868.1|90251_90704_+	transporter	NA	NA	NA	NA	NA
AYV51869.1|91050_92162_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
AYV51870.1|92198_92804_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYV51871.1|94251_94620_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51872.1|94839_95142_-	hypothetical protein	NA	NA	NA	NA	NA
AYV51873.1|95143_95311_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AYV51874.1|95877_96027_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AYV51875.1|96056_96230_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AYV51876.1|96593_98375_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.1	3.8e-61
AYV51877.1|98427_99213_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
AYV51878.1|99267_100527_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	45.4	3.5e-93
AYV51879.1|100570_101059_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYV51880.1|101210_101678_+	DUF3013 family protein	NA	NA	NA	NA	NA
AYV51881.1|101707_103261_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	28.1	3.0e-46
AYV51882.1|103391_103676_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51883.1|103713_104202_+	DUF1905 domain-containing protein	NA	NA	NA	NA	NA
AYV51884.1|104219_105173_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AYV51885.1|105272_106025_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYV51886.1|106053_107010_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AYV51887.1|107210_109433_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	U5J9N6	Bacillus_phage	28.3	2.9e-13
AYV51888.1|109448_110384_-	glycosyltransferase	NA	V9QJB1	Oenococcus_phage	49.7	1.3e-76
AYV51889.1|110574_111030_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
>prophage 3
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	135559	174031	2365672	transposase,protease,tRNA,bacteriocin	Shigella_phage(40.0%)	36	NA	NA
AYV51911.1|135559_135787_+|bacteriocin	bacteriocin leader domain-containing protein	bacteriocin	NA	NA	NA	NA
AYV51912.1|135964_136510_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYV51913.1|136562_137243_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYV51914.1|137411_138558_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
AYV51915.1|138615_139987_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.4	1.6e-54
AYV51916.1|140043_141191_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
AYV51917.1|141495_141762_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
AYV51918.1|141761_142193_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AYV51919.1|142345_142669_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
AYV51920.1|142699_143251_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
AYV51921.1|143345_144131_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYV51922.1|144150_144396_-	DUF2316 family protein	NA	NA	NA	NA	NA
AYV51923.1|144405_145191_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYV51924.1|145302_145848_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYV51925.1|145929_147876_-	1,4-alpha-glucan-branching enzyme	NA	NA	NA	NA	NA
AYV53972.1|148002_148323_-	hypothetical protein	NA	NA	NA	NA	NA
AYV51926.1|148794_154746_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AYV51927.1|155374_156523_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	42.9	3.2e-85
AYV51928.1|156714_157407_+	DUF975 family protein	NA	NA	NA	NA	NA
AYV51929.1|157467_158649_-	MFS transporter	NA	NA	NA	NA	NA
AYV51930.1|158829_159267_-	CoA-binding protein	NA	NA	NA	NA	NA
AYV51931.1|159401_160193_+	DNAse	NA	NA	NA	NA	NA
AYV51932.1|160357_160567_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51933.1|160578_160818_+	hypothetical protein	NA	NA	NA	NA	NA
AYV51934.1|161013_162597_+	APC family permease	NA	NA	NA	NA	NA
AYV51935.1|162665_163880_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AYV51936.1|164032_164821_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
AYV51937.1|165329_165635_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
AYV51938.1|165634_167095_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
AYV51939.1|167098_167701_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AYV51940.1|167740_169174_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
AYV51941.1|169397_170897_+	amidase	NA	NA	NA	NA	NA
AYV51942.1|170978_172319_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AYV51943.1|172500_172698_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	81.5	7.8e-24
AYV51944.1|172815_173349_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AYV51945.1|173338_174031_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
>prophage 4
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	395391	407522	2365672		Streptococcus_phage(40.0%)	14	NA	NA
AYV52144.1|395391_395709_+	thioredoxin	NA	A0A0K2FIM3	Achromobacter_phage	30.4	4.5e-05
AYV52145.1|395794_396421_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
AYV52146.1|396583_397924_+	NADH oxidase	NA	NA	NA	NA	NA
AYV52147.1|398013_398403_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.0	1.4e-24
AYV52148.1|398522_398807_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
AYV52149.1|398894_400523_+	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
AYV52150.1|400568_401381_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	3.1e-34
AYV52151.1|401551_402994_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
AYV52152.1|402986_403688_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
AYV52153.1|403865_404501_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	65.0	5.4e-74
AYV52154.1|404633_405494_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	45.2	5.0e-67
AYV52155.1|405545_406328_+	Signal peptidase	NA	NA	NA	NA	NA
AYV52156.1|406320_406647_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
AYV52157.1|406646_407522_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	8.7e-99
>prophage 5
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	444572	520484	2365672	terminase,tail,protease,tRNA,capsid,holin,head,integrase,portal	Lactococcus_phage(90.91%)	108	502594:502622	517744:517772
AYV53986.1|444572_444998_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AYV52187.1|444994_445513_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYV52188.1|445616_447002_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
AYV52189.1|447233_448367_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	100.0	2.8e-214
AYV52190.1|448489_449068_-	SHOCT domain-containing protein	NA	Q9AZQ9	Lactococcus_phage	100.0	9.8e-99
AYV52191.1|449151_449988_-	helix-turn-helix domain-containing protein	NA	Q9AZQ8	Lactococcus_phage	100.0	6.0e-158
AYV52192.1|450204_450387_+	hypothetical protein	NA	A0A1B1IMU6	Lactococcus_phage	96.6	5.0e-25
AYV52193.1|450418_450652_+	hypothetical protein	NA	Q9AZQ6	Lactococcus_phage	100.0	5.0e-38
AYV52194.1|450760_450910_+	hypothetical protein	NA	Q9AZQ5	Lactococcus_phage	100.0	9.1e-17
AYV52195.1|451004_451412_+	transcriptional regulator	NA	Q77JL3	Lactococcus_phage	100.0	1.2e-37
AYV52196.1|451423_452179_+	transporter	NA	Q9AZQ4	Lactococcus_phage	100.0	1.1e-139
AYV52197.1|452191_452521_+	DUF771 domain-containing protein	NA	Q9AZQ3	Lactococcus_phage	100.0	8.1e-58
AYV52198.1|452521_452692_+	hypothetical protein	NA	A0A1P8BME6	Lactococcus_phage	100.0	8.7e-24
AYV52199.1|452735_452909_+	hypothetical protein	NA	Q9AZQ1	Lactococcus_phage	100.0	8.0e-25
AYV52200.1|453007_453814_+	recombinase RecT	NA	Q9AZQ0	Lactococcus_phage	100.0	6.2e-144
AYV52201.1|453813_454590_+	hypothetical protein	NA	Q9AZP9	Lactococcus_phage	100.0	2.6e-147
AYV52202.1|454817_455594_+	replisome organizer	NA	Q9AZP8	Lactococcus_phage	100.0	2.0e-131
AYV52203.1|455603_456488_+	ATP-binding protein	NA	Q9AZP7	Lactococcus_phage	100.0	1.6e-164
AYV52204.1|456484_456649_+	hypothetical protein	NA	Q9AZP6	Lactococcus_phage	100.0	2.5e-23
AYV52205.1|456572_457049_+	hypothetical protein	NA	Q9AZP5	Lactococcus_phage	99.3	7.3e-76
AYV52206.1|457156_457321_+	hypothetical protein	NA	Q9AZP4	Lactococcus_phage	100.0	4.9e-24
AYV52207.1|457295_457658_+	DUF658 domain-containing protein	NA	Q9AZP3	Lactococcus_phage	100.0	1.5e-60
AYV52208.1|457851_458058_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
AYV52209.1|458050_458323_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
AYV52210.1|458319_458874_+	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
AYV52211.1|458870_459290_+	dUTP diphosphatase	NA	Q9AZP1	Lactococcus_phage	100.0	3.0e-73
AYV52212.1|459289_459580_+	hypothetical protein	NA	Q9AZP0	Lactococcus_phage	100.0	2.5e-47
AYV52213.1|459576_459741_+	hypothetical protein	NA	Q9AZN9	Lactococcus_phage	100.0	4.9e-24
AYV52214.1|459789_459933_+	hypothetical protein	NA	Q9AZN8	Lactococcus_phage	100.0	2.1e-18
AYV52215.1|459929_460112_+	hypothetical protein	NA	Q9AZN7	Lactococcus_phage	100.0	1.8e-30
AYV53987.1|460178_460286_+	hypothetical protein	NA	Q8LTM0	Lactococcus_phage	94.3	1.7e-09
AYV52216.1|460293_460479_+	hypothetical protein	NA	Q9AZN6	Lactococcus_phage	100.0	1.6e-26
AYV52217.1|460531_460741_-	hypothetical protein	NA	NA	NA	NA	NA
AYV52218.1|460953_461247_+	DUF1359 domain-containing protein	NA	Q9AZN4	Lactococcus_phage	100.0	9.7e-47
AYV52219.1|461358_461604_+	XRE family transcriptional regulator	NA	Q9AZN3	Lactococcus_phage	100.0	4.5e-37
AYV52220.1|461648_462038_+	DUF1359 domain-containing protein	NA	Q9AZN2	Lactococcus_phage	100.0	5.8e-63
AYV53988.1|462039_462438_+	hypothetical protein	NA	Q9AZN1	Lactococcus_phage	100.0	2.4e-64
AYV52221.1|462434_462587_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52222.1|462763_463186_+	DUF722 domain-containing protein	NA	Q9AZM9	Lactococcus_phage	100.0	8.5e-52
AYV52223.1|463423_463927_+	HNH endonuclease	NA	Q9AZM8	Lactococcus_phage	100.0	3.1e-93
AYV52224.1|464043_464496_+|terminase	phage terminase small subunit P27 family	terminase	Q9AZM7	Lactococcus_phage	100.0	1.3e-82
AYV52225.1|464495_466310_+|terminase	terminase large subunit	terminase	Q9AZM6	Lactococcus_phage	100.0	0.0e+00
AYV52226.1|466318_466483_+	hypothetical protein	NA	Q9AZM5	Lactococcus_phage	100.0	1.9e-20
AYV52227.1|466479_467559_+|portal	phage portal protein	portal	Q9AZM4	Lactococcus_phage	100.0	2.4e-199
AYV52228.1|467558_468146_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZM3	Lactococcus_phage	100.0	4.4e-107
AYV52229.1|468135_469449_+|capsid	phage major capsid protein	capsid	Q9AZM2	Lactococcus_phage	100.0	2.0e-200
AYV52230.1|469459_469765_+	hypothetical protein	NA	Q9AZM1	Lactococcus_phage	100.0	4.4e-50
AYV52231.1|469751_470087_+|head,tail	head-tail adaptor protein	head,tail	Q9AZM0	Lactococcus_phage	100.0	5.9e-56
AYV52232.1|470083_470569_+	HK97 gp10 family phage protein	NA	Q9AZL9	Lactococcus_phage	100.0	8.8e-85
AYV52233.1|470565_470961_+	DUF806 family protein	NA	Q9AZL8	Lactococcus_phage	100.0	1.4e-67
AYV52234.1|470962_471568_+	hypothetical protein	NA	Q9AZL7	Lactococcus_phage	100.0	4.9e-109
AYV52235.1|471627_471972_+	hypothetical protein	NA	Q9AZL6	Lactococcus_phage	100.0	1.2e-27
AYV52236.1|472141_475981_+	hypothetical protein	NA	Q9AZL5	Lactococcus_phage	100.0	0.0e+00
AYV52237.1|475983_477519_+|tail	phage tail protein	tail	Q9AZL3	Lactococcus_phage	100.0	4.8e-294
AYV52238.1|477518_481844_+	hypothetical protein	NA	Q9AZL2	Lactococcus_phage	100.0	0.0e+00
AYV52239.1|481863_482190_+	hypothetical protein	NA	Q9AZL1	Lactococcus_phage	100.0	3.9e-52
AYV52240.1|482176_482464_+|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	100.0	5.6e-47
AYV52241.1|482463_483243_+|holin	phage holin	holin	Q9AZK9	Lactococcus_phage	100.0	2.1e-128
AYV52242.1|483347_483551_-	hypothetical protein	NA	A5GYL5	Lactococcus_phage	89.6	4.5e-27
AYV52243.1|484224_484986_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AYV52244.1|485018_485807_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AYV52245.1|485855_486347_+	thiamine transporter	NA	NA	NA	NA	NA
AYV52246.1|486327_486870_+	TIGR01440 family protein	NA	NA	NA	NA	NA
AYV52247.1|486870_488007_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
AYV52248.1|488241_489849_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	44.5	1.0e-129
AYV52249.1|490932_491805_-	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
AYV52250.1|492152_492353_-	DUF2929 family protein	NA	NA	NA	NA	NA
AYV52251.1|492450_492930_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1D3SPR3	Enterococcus_phage	47.4	6.5e-32
AYV52252.1|492913_493336_-	LOG family protein	NA	A0A1D3SNB7	Enterococcus_phage	41.4	2.2e-15
AYV52253.1|493467_494121_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	45.9	6.6e-51
AYV52254.1|494600_497783_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.2	1.1e-122
AYV52255.1|497813_498467_-	hemolysin III family protein	NA	NA	NA	NA	NA
AYV52256.1|498647_499505_+	DegV family protein	NA	NA	NA	NA	NA
AYV52257.1|499497_500358_+	GDSL family lipase	NA	NA	NA	NA	NA
AYV52258.1|500354_501566_+	glycoside hydrolase family 3 protein	NA	NA	NA	NA	NA
AYV52259.1|501575_502232_+	DUF2140 family protein	NA	NA	NA	NA	NA
AYV52260.1|502336_502612_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	67.4	1.6e-22
502594:502622	attL	GAAAGACGCAGTTAAATAATTATAGCTAT	NA	NA	NA	NA
AYV52261.1|502721_503870_-|integrase	site-specific integrase	integrase	Q9AZF9	Lactococcus_phage	100.0	1.4e-210
AYV52262.1|503993_504485_-	hypothetical protein	NA	Q9AZF8	Lactococcus_phage	100.0	3.7e-83
AYV52263.1|504538_504835_-	hypothetical protein	NA	Q9AZF7	Lactococcus_phage	100.0	3.3e-50
AYV52264.1|504881_505469_-	hypothetical protein	NA	Q9AZF6	Lactococcus_phage	100.0	3.6e-109
AYV52265.1|505480_505849_-	XRE family transcriptional regulator	NA	Q9AZF5	Lactococcus_phage	100.0	1.8e-66
AYV52266.1|506142_506334_+	hypothetical protein	NA	Q9AZF4	Lactococcus_phage	100.0	8.6e-28
AYV52267.1|506349_506610_+	excisionase	NA	Q9AZF3	Lactococcus_phage	100.0	8.6e-47
AYV52268.1|506768_506963_+	DUF1655 domain-containing protein	NA	Q9AZF2	Lactococcus_phage	100.0	1.0e-28
AYV52269.1|506967_507393_+	hypothetical protein	NA	Q9AZF1	Lactococcus_phage	100.0	2.6e-77
AYV52270.1|507427_507667_+	hypothetical protein	NA	Q9AZF0	Lactococcus_phage	100.0	3.6e-39
AYV52271.1|507663_507918_+	hypothetical protein	NA	Q9AZE9	Lactococcus_phage	100.0	3.7e-42
AYV52272.1|507914_508109_+	hypothetical protein	NA	Q9AZE8	Lactococcus_phage	100.0	2.3e-28
AYV52273.1|508095_508422_+	HTH domain-containing protein	NA	Q9AZE7	Lactococcus_phage	100.0	1.1e-54
AYV52274.1|508429_509008_+	hypothetical protein	NA	Q9AZE6	Lactococcus_phage	100.0	1.2e-91
AYV52275.1|509000_510443_+	hypothetical protein	NA	Q9AZE5	Lactococcus_phage	100.0	1.6e-278
AYV52276.1|510594_511179_+	hypothetical protein	NA	Q9AZE4	Lactococcus_phage	100.0	2.9e-106
AYV52277.1|511355_511541_+	hypothetical protein	NA	Q9AZE3	Lactococcus_phage	100.0	7.0e-27
AYV52278.1|511567_512176_+	hypothetical protein	NA	Q9AZE2	Lactococcus_phage	100.0	1.2e-102
AYV52279.1|512184_512775_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZE1	Lactococcus_phage	100.0	9.0e-108
AYV52280.1|512990_513320_+	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	100.0	9.3e-54
AYV52281.1|513420_513741_+	sigma-70 family RNA polymerase sigma factor	NA	Q9AZD9	Lactococcus_phage	100.0	3.8e-52
AYV52282.1|514064_514337_-	hypothetical protein	NA	NA	NA	NA	NA
AYV52283.1|514453_514675_+	hypothetical protein	NA	Q9AZD7	Lactococcus_phage	100.0	3.0e-32
AYV52284.1|514843_515332_+	DUF4065 domain-containing protein	NA	Q9AZD6	Lactococcus_phage	100.0	5.0e-88
AYV52285.1|515297_515864_+	hypothetical protein	NA	Q9AZD5	Lactococcus_phage	100.0	4.6e-101
AYV52286.1|516182_516365_+	hypothetical protein	NA	Q9AZD4	Lactococcus_phage	100.0	5.0e-25
AYV52287.1|517112_517313_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	100.0	6.7e-31
AYV52288.1|517853_518351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
517744:517772	attR	GAAAGACGCAGTTAAATAATTATAGCTAT	NA	NA	NA	NA
AYV52289.1|518497_519007_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.1	4.3e-26
AYV52290.1|519020_519581_+	methylphosphotriester-DNA--protein-cysteine methyltransferase family protein	NA	NA	NA	NA	NA
AYV52291.1|519674_520484_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	36.7	2.2e-19
>prophage 6
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	614996	672971	2365672	transposase,integrase,tRNA,protease	Bacillus_phage(25.0%)	47	634320:634379	651788:651899
AYV52379.1|614996_615881_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AYV52380.1|615963_616632_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52381.1|616802_617699_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	34.8	1.8e-35
AYV52382.1|618073_618334_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52383.1|618691_619615_+	ribonuclease Z	NA	NA	NA	NA	NA
AYV52384.1|619607_620309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYV52385.1|620475_622704_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.4	1.3e-79
AYV52386.1|622781_623339_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.4	2.6e-32
AYV52387.1|623554_624118_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
AYV52388.1|624254_625907_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AYV52389.1|625969_626440_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AYV52390.1|626558_627706_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	1.3e-46
AYV52391.1|627779_629152_-|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.1	3.0e-53
AYV53994.1|629351_629807_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
AYV52392.1|629796_632247_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	34.0	5.7e-124
AYV52393.1|632381_632939_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
AYV52394.1|633123_634425_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
634320:634379	attL	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGT	NA	NA	NA	NA
AYV52395.1|634509_635448_+|integrase	integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	5.2e-25
AYV52396.1|635720_636488_+	hypothetical protein	NA	NA	NA	NA	NA
AYV53995.1|637075_637216_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52397.1|637531_637714_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52398.1|637735_638905_+	hypothetical protein	NA	V9VGE4	Lactococcus_phage	40.4	1.1e-37
AYV52399.1|640777_643765_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.4	5.5e-20
AYV52400.1|643804_645352_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.1	1.4e-99
AYV52401.1|645348_646572_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	30.7	1.6e-34
AYV52402.1|646592_646718_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52403.1|646695_647775_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52404.1|647936_648206_+	hypothetical protein	NA	NA	NA	NA	NA
AYV53996.1|648540_648708_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52405.1|648973_649744_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52406.1|650154_651266_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.1	4.2e-50
AYV52407.1|651419_651509_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52408.1|652007_652679_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	1.6e-28
651788:651899	attR	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGTGGCTCAATACAAAGGTCTTAAAGCATTCTACAACCTTAAAAAATAAGGTTTA	NA	NA	NA	NA
AYV52409.1|652681_653755_-	ABC transporter permease	NA	NA	NA	NA	NA
AYV52410.1|653766_654336_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYV52411.1|654523_656047_-	long-chain acyl-CoA synthetase	NA	NA	NA	NA	NA
AYV52412.1|656291_657155_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
AYV52413.1|657415_659779_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.0	9.5e-108
AYV52414.1|659910_660570_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
AYV52415.1|660572_661790_+	MFS transporter	NA	NA	NA	NA	NA
AYV52416.1|661786_661933_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AYV52417.1|662273_663536_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
AYV52418.1|663641_667055_+	pyruvate carboxylase	NA	NA	NA	NA	NA
AYV52419.1|667178_668504_+	citrate/2-methylcitrate synthase	NA	NA	NA	NA	NA
AYV52420.1|668500_671047_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
AYV52421.1|671067_672306_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
AYV52422.1|672371_672971_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	52.0	2.1e-51
>prophage 7
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	999585	1013369	2365672		Enterococcus_phage(25.0%)	11	NA	NA
AYV52702.1|999585_1000278_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	2.7e-31
AYV52703.1|1000270_1001206_+	ABC transporter permease	NA	NA	NA	NA	NA
AYV52704.1|1001307_1002285_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.2	2.4e-118
AYV52705.1|1002634_1004803_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.1	3.0e-257
AYV52706.1|1004938_1005361_-	protein NrdI	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
AYV52707.1|1005362_1005581_-	NrdH-redoxin	NA	C3U2K9	Lactococcus_phage	47.6	7.6e-12
AYV52708.1|1005754_1006396_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AYV52709.1|1006670_1008605_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.2	1.6e-124
AYV52710.1|1009340_1010174_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
AYV52711.1|1010170_1010620_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYV52712.1|1010894_1013369_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.2	4.2e-98
>prophage 8
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	1022027	1104815	2365672	terminase,tail,protease,tRNA,capsid,holin,head,integrase,portal	Lactococcus_phage(76.92%)	115	1027637:1027653	1072825:1072841
AYV52720.1|1022027_1023116_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.8	8.4e-51
AYV52721.1|1023115_1023766_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.6	1.2e-41
AYV52722.1|1023774_1024971_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.0	1.3e-110
AYV52723.1|1024998_1025463_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.0	5.3e-39
AYV52724.1|1025565_1026018_+	signal peptidase II	NA	NA	NA	NA	NA
AYV52725.1|1026078_1026984_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
AYV52726.1|1027130_1027574_+	divergent PAP2 family protein	NA	NA	NA	NA	NA
1027637:1027653	attL	GTAAAAAATGAGAAATT	NA	NA	NA	NA
AYV52727.1|1027713_1029336_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52728.1|1029338_1030295_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	37.5	3.1e-49
AYV52729.1|1030420_1031107_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.6	5.5e-32
AYV52730.1|1031126_1031642_+	DUF2127 domain-containing protein	NA	NA	NA	NA	NA
AYV52731.1|1031645_1032971_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	27.5	3.4e-22
AYV52732.1|1032977_1033634_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AYV52733.1|1033814_1035632_+	glutamine--fructose-6-phosphate aminotransferase	NA	M1HVL7	Paramecium_bursaria_Chlorella_virus	37.0	3.5e-94
AYV52734.1|1035762_1036443_+	DNA repair protein RadC	NA	NA	NA	NA	NA
AYV52735.1|1036641_1037766_-|integrase	site-specific integrase	integrase	Q9B016	Lactococcus_phage	100.0	1.0e-213
AYV52736.1|1037888_1038434_-	hypothetical protein	NA	Q9B015	Lactococcus_phage	100.0	8.9e-94
AYV52737.1|1038490_1038928_-	ImmA/IrrE family metallo-endopeptidase	NA	Q9B014	Lactococcus_phage	100.0	1.1e-81
AYV52738.1|1038924_1039467_-	helix-turn-helix domain-containing protein	NA	Q9B013	Lactococcus_phage	100.0	3.1e-91
AYV52739.1|1039634_1039853_+	DUF739 family protein	NA	O48504	Lactococcus_phage	100.0	2.9e-35
AYV52740.1|1039889_1040633_+	hypothetical protein	NA	Q9B012	Lactococcus_phage	100.0	2.1e-138
AYV52741.1|1040645_1040981_+	DUF771 domain-containing protein	NA	Q38331	Lactococcus_phage	100.0	1.3e-58
AYV52742.1|1041118_1041313_+	hypothetical protein	NA	Q77JL6	Lactococcus_phage	100.0	3.0e-28
AYV52743.1|1041309_1041585_-	hypothetical protein	NA	Q9AYU7	Lactococcus_phage	98.9	3.5e-46
AYV52744.1|1041687_1041903_+	DUF1408 domain-containing protein	NA	Q9XJE1	Lactococcus_phage	100.0	3.1e-34
AYV52745.1|1042018_1042537_+	hypothetical protein	NA	Q9XJE3	Lactococcus_phage	100.0	6.3e-89
AYV52746.1|1042545_1043169_+	DUF1071 domain-containing protein	NA	Q9B009	Lactococcus_phage	100.0	1.9e-116
AYV52747.1|1043168_1043621_+	single-stranded DNA-binding protein	NA	Q9B008	Lactococcus_phage	100.0	4.6e-80
AYV54010.1|1043760_1044528_+	replisome organizer	NA	A5GYR3	Lactococcus_phage	100.0	1.7e-122
AYV52748.1|1044527_1045253_+	hypothetical protein	NA	Q9XJE7	Lactococcus_phage	100.0	1.8e-134
AYV52749.1|1045249_1045639_+	RusA family crossover junction endodeoxyribonuclease	NA	R9QLL1	Lactococcus_phage	100.0	3.2e-69
AYV52750.1|1045641_1045836_+	hypothetical protein	NA	Q9B005	Lactococcus_phage	100.0	6.7e-28
AYV52751.1|1045816_1046068_+	DUF1031 domain-containing protein	NA	Q9B004	Lactococcus_phage	98.8	1.3e-39
AYV52752.1|1046179_1046446_+	hypothetical protein	NA	Q9B003	Lactococcus_phage	100.0	6.3e-45
AYV52753.1|1046467_1046647_+	DUF1497 domain-containing protein	NA	Q9AYU3	Lactococcus_phage	100.0	9.2e-24
AYV52754.1|1046636_1047206_+	DUF658 domain-containing protein	NA	Q9B002	Lactococcus_phage	100.0	2.8e-90
AYV52755.1|1047399_1047606_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
AYV52756.1|1047598_1047871_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
AYV52757.1|1047867_1048422_+	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
AYV52758.1|1048418_1048838_+	dUTP diphosphatase	NA	Q9B001	Lactococcus_phage	100.0	5.1e-73
AYV52759.1|1048840_1049338_+	hypothetical protein	NA	Q9B000	Lactococcus_phage	100.0	2.2e-91
AYV52760.1|1049327_1049675_+	hypothetical protein	NA	Q9AZZ9	Lactococcus_phage	100.0	4.5e-59
AYV52761.1|1049696_1049861_+	hypothetical protein	NA	Q9AZZ8	Lactococcus_phage	100.0	4.9e-24
AYV52762.1|1049907_1050093_+	hypothetical protein	NA	Q9AZZ7	Lactococcus_phage	100.0	2.4e-27
AYV52763.1|1050134_1050308_+	hypothetical protein	NA	Q9AZZ6	Lactococcus_phage	100.0	1.9e-29
AYV52764.1|1050308_1050608_+	hypothetical protein	NA	Q9AZZ5	Lactococcus_phage	100.0	4.8e-49
AYV52765.1|1050604_1050787_+	hypothetical protein	NA	Q9AZZ4	Lactococcus_phage	100.0	4.3e-29
AYV54011.1|1050724_1050988_-	hypothetical protein	NA	NA	NA	NA	NA
AYV52766.1|1051150_1051444_+	DUF1359 domain-containing protein	NA	Q9AZZ2	Lactococcus_phage	100.0	4.4e-47
AYV52767.1|1051521_1051923_+	DUF722 domain-containing protein	NA	Q9AZZ1	Lactococcus_phage	100.0	5.6e-69
AYV52768.1|1052186_1052486_+	HNH endonuclease	NA	Q9AZZ0	Lactococcus_phage	100.0	9.6e-58
AYV52769.1|1052577_1052946_+|terminase	P27 family phage terminase small subunit	terminase	Q9AZY9	Lactococcus_phage	100.0	1.8e-61
AYV52770.1|1052929_1054708_+|terminase	terminase large subunit	terminase	Q9AZY8	Lactococcus_phage	100.0	0.0e+00
AYV52771.1|1054721_1055927_+|portal	phage portal protein	portal	Q9AZY7	Lactococcus_phage	99.8	3.6e-228
AYV52772.1|1055941_1056538_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZY6	Lactococcus_phage	100.0	5.5e-105
AYV52773.1|1056509_1057703_+|capsid	phage major capsid protein	capsid	Q9AZY5	Lactococcus_phage	100.0	3.6e-172
AYV52774.1|1057757_1058615_+	hypothetical protein	NA	Q9AZY4	Lactococcus_phage	100.0	1.1e-167
AYV52775.1|1058607_1058889_+	hypothetical protein	NA	Q9AZY3	Lactococcus_phage	100.0	6.7e-45
AYV52776.1|1058875_1059193_+	hypothetical protein	NA	Q9AZY2	Lactococcus_phage	99.0	4.6e-50
AYV52777.1|1059182_1059554_+	hypothetical protein	NA	Q9AZY1	Lactococcus_phage	100.0	2.5e-63
AYV52778.1|1059550_1059868_+	hypothetical protein	NA	Q9AZY0	Lactococcus_phage	100.0	7.5e-53
AYV52779.1|1059885_1060494_+|tail	phage tail protein	tail	Q9AZX9	Lactococcus_phage	100.0	3.3e-105
AYV52780.1|1060503_1060863_+	hypothetical protein	NA	Q9AZX8	Lactococcus_phage	100.0	2.7e-62
AYV52781.1|1060889_1061066_+	hypothetical protein	NA	A0A2H4JHE4	uncultured_Caudovirales_phage	53.8	1.8e-08
AYV52782.1|1061079_1063341_+|tail	phage tail tape measure protein	tail	Q9AZX7	Lactococcus_phage	100.0	0.0e+00
AYV52783.1|1063341_1064091_+|tail	phage tail protein	tail	Q9AZX6	Lactococcus_phage	99.6	1.5e-144
AYV52784.1|1064087_1066772_+	hypothetical protein	NA	Q9AZX5	Lactococcus_phage	99.9	0.0e+00
AYV52785.1|1066784_1068386_+	DUF2479 domain-containing protein	NA	Q9AZX4	Lactococcus_phage	100.0	0.0e+00
AYV52786.1|1068378_1069209_+	hypothetical protein	NA	Q9AZX3	Lactococcus_phage	100.0	3.1e-154
AYV52787.1|1069267_1069675_+	hypothetical protein	NA	Q9AZX2	Lactococcus_phage	100.0	2.3e-70
AYV52788.1|1069661_1070000_+	hypothetical protein	NA	Q9AZX1	Lactococcus_phage	100.0	1.3e-55
AYV52789.1|1070001_1070229_+	hypothetical protein	NA	Q9AZX0	Lactococcus_phage	100.0	1.6e-33
AYV52790.1|1070254_1070479_+|holin	holin	holin	Q9AZW9	Lactococcus_phage	100.0	1.0e-32
AYV52791.1|1070491_1070779_+|holin	phage holin	holin	Q9AZW8	Lactococcus_phage	100.0	9.5e-47
AYV52792.1|1070778_1071558_+|holin	phage holin	holin	Q9AZW7	Lactococcus_phage	100.0	5.5e-129
AYV52793.1|1071591_1071795_-	hypothetical protein	NA	A5GYL5	Lactococcus_phage	92.5	3.4e-30
AYV52794.1|1071764_1071950_+	hypothetical protein	NA	Q77RZ6	Lactococcus_phage	80.3	4.1e-19
AYV52795.1|1072059_1072710_-	transcriptional regulator	NA	NA	NA	NA	NA
AYV52796.1|1072934_1073327_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
1072825:1072841	attR	GTAAAAAATGAGAAATT	NA	NA	NA	NA
AYV52797.1|1073504_1075412_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.6e-49
AYV52798.1|1075600_1076401_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52799.1|1076402_1076768_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52800.1|1077283_1077469_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52801.1|1077643_1078501_+	transcriptional regulator	NA	NA	NA	NA	NA
AYV52802.1|1078747_1079479_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52803.1|1079491_1079671_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52804.1|1079704_1079893_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52805.1|1080178_1080358_+	hypothetical protein	NA	NA	NA	NA	NA
AYV52806.1|1080700_1081330_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	27.4	1.4e-05
AYV52807.1|1081430_1082756_+	dihydroorotase	NA	NA	NA	NA	NA
AYV52808.1|1083162_1083831_+	DnaD domain protein	NA	C5J987	Streptococcus_phage	32.6	1.5e-05
AYV52809.1|1083852_1084509_+	endonuclease III	NA	NA	NA	NA	NA
AYV52810.1|1084501_1085194_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AYV52811.1|1085190_1085964_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AYV52812.1|1086002_1086368_-	hypothetical protein	NA	NA	NA	NA	NA
AYV52813.1|1086489_1087305_-	sugar-phosphatase	NA	NA	NA	NA	NA
AYV52814.1|1087351_1088713_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	34.3	1.2e-25
AYV52815.1|1088881_1089289_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
AYV52816.1|1089281_1090457_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
AYV52817.1|1090626_1090941_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AYV52818.1|1090943_1091279_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AYV52819.1|1091280_1091565_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AYV52820.1|1093130_1094099_+	phosphate starvation-inducible protein PhoH	NA	H6X2N1	Pseudomonas_phage	50.5	5.9e-48
AYV52821.1|1094156_1094636_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AYV52822.1|1094787_1095276_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AYV52823.1|1095259_1095715_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AYV52824.1|1095728_1096307_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AYV54012.1|1096340_1096991_-	ComF family protein	NA	NA	NA	NA	NA
AYV52825.1|1096987_1098310_-	DNA/RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	51.3	4.5e-115
AYV52826.1|1098366_1098996_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	53.0	7.2e-55
AYV52827.1|1099129_1099627_+	VanZ family protein	NA	NA	NA	NA	NA
AYV52828.1|1099674_1100694_+	DUF475 domain-containing protein	NA	K4JUR1	Caulobacter_phage	43.5	1.1e-55
AYV52829.1|1100803_1101556_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AYV52830.1|1101840_1102794_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AYV52831.1|1102793_1104815_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 9
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	1395767	1460496	2365672	integrase,terminase,tail,head,protease,capsid,holin,transposase,portal	Lactococcus_phage(90.91%)	81	1415359:1415418	1457114:1457186
AYV53081.1|1395767_1396715_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
AYV53082.1|1396674_1397082_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53083.1|1397132_1397567_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53084.1|1397579_1398161_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53085.1|1398357_1401552_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AYV53086.1|1401863_1402337_-	glutathione peroxidase	NA	NA	NA	NA	NA
AYV53087.1|1402519_1403149_+	N-acetyl-muramidase	NA	A0A0K2CP65	Brevibacillus_phage	46.3	1.5e-28
AYV53088.1|1403190_1405827_-	Calcium-transporting ATPase 1	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	30.8	4.5e-90
AYV53089.1|1406084_1406810_-	DNA integration/recombination/inversion protein	NA	NA	NA	NA	NA
AYV53090.1|1407027_1407597_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53091.1|1407737_1408553_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53092.1|1409063_1409618_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
AYV53093.1|1409800_1410559_+	pilus assembly protein	NA	NA	NA	NA	NA
AYV53094.1|1410624_1410978_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
AYV53095.1|1411074_1411503_-	universal stress protein	NA	NA	NA	NA	NA
AYV53096.1|1411813_1412215_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	48.8	2.4e-27
AYV53097.1|1414181_1414712_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53098.1|1414900_1415134_+	hypothetical protein	NA	NA	NA	NA	NA
1415359:1415418	attL	AAAAACCGCTCTATTGAGCGATTTCTAATACTATTGGATTCTATAAAATCCATTCAATGG	NA	NA	NA	NA
AYV53099.1|1415880_1416084_+	hypothetical protein	NA	A5GYL5	Lactococcus_phage	100.0	2.5e-33
AYV53100.1|1416117_1416897_-|holin	phage holin	holin	Q9AZR1	Lactococcus_phage	100.0	6.1e-128
AYV53101.1|1416896_1417196_-|holin	phage holin	holin	Q9AZR2	Lactococcus_phage	100.0	1.3e-46
AYV53102.1|1417221_1418784_-	DUF2479 domain-containing protein	NA	Q9AZR3	Lactococcus_phage	100.0	4.0e-256
AYV53103.1|1418795_1419020_-|holin	holin	holin	Q9AZR4	Lactococcus_phage	100.0	6.1e-33
AYV53104.1|1419039_1421472_-	hypothetical protein	NA	Q9AZR5	Lactococcus_phage	100.0	0.0e+00
AYV53105.1|1421449_1421623_-	hypothetical protein	NA	Q9AZR6	Lactococcus_phage	100.0	8.0e-25
AYV53106.1|1421622_1422744_-	hypothetical protein	NA	Q9AZR7	Lactococcus_phage	99.7	3.1e-194
AYV53107.1|1422759_1424547_-	hypothetical protein	NA	Q9AZR8	Lactococcus_phage	100.0	0.0e+00
AYV53108.1|1424546_1426082_-|tail	phage tail protein	tail	Q9AZR9	Lactococcus_phage	100.0	2.1e-294
AYV53109.1|1426084_1431007_-|tail	phage tail tape measure protein	tail	Q9AZS0	Lactococcus_phage	100.0	0.0e+00
AYV53110.1|1431231_1431651_-	hypothetical protein	NA	Q9AZS1	Lactococcus_phage	100.0	1.9e-67
AYV53111.1|1431795_1432389_-|tail	phage tail protein	tail	Q9AZS2	Lactococcus_phage	100.0	3.8e-106
AYV53112.1|1432419_1432815_-	DUF806 family protein	NA	Q9AZS3	Lactococcus_phage	100.0	3.9e-67
AYV53113.1|1432811_1433318_-	hypothetical protein	NA	Q9AZS4	Lactococcus_phage	100.0	3.6e-89
AYV53114.1|1433319_1433670_-|tail	phage tail protein	tail	Q9AZS5	Lactococcus_phage	100.0	2.5e-57
AYV53115.1|1433644_1433968_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9AZS6	Lactococcus_phage	100.0	6.3e-55
AYV53116.1|1433983_1435210_-|capsid	phage major capsid protein	capsid	Q9AZS7	Lactococcus_phage	99.8	4.6e-223
AYV53117.1|1435221_1435929_-|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	1.4e-120
AYV53118.1|1435971_1437150_-|portal	phage portal protein	portal	Q77P35	Lactococcus_phage	100.0	3.1e-224
AYV53119.1|1437146_1437356_-	DUF1056 family protein	NA	Q9AZT0	Lactococcus_phage	100.0	3.8e-29
AYV53120.1|1437324_1439298_-|terminase	terminase large subunit	terminase	Q9AZT1	Lactococcus_phage	100.0	0.0e+00
AYV53121.1|1439284_1439758_-|terminase	phage terminase small subunit P27 family	terminase	Q9AZT2	Lactococcus_phage	100.0	5.9e-86
AYV53122.1|1439886_1440402_-	HNH endonuclease	NA	Q9AZT3	Lactococcus_phage	100.0	2.3e-99
AYV53123.1|1440403_1440709_-	hypothetical protein	NA	Q9AZT4	Lactococcus_phage	100.0	1.1e-35
AYV53124.1|1440856_1441279_-	DUF722 domain-containing protein	NA	Q9AZT6	Lactococcus_phage	100.0	1.5e-51
AYV53125.1|1441356_1441716_-	hypothetical protein	NA	Q9AZT7	Lactococcus_phage	100.0	1.3e-56
AYV53126.1|1441840_1441996_-	hypothetical protein	NA	Q9AZT8	Lactococcus_phage	100.0	1.5e-22
AYV54020.1|1442003_1442111_-	hypothetical protein	NA	A0A1P8BKA2	Lactococcus_phage	94.3	7.7e-10
AYV53127.1|1442176_1442371_-	hypothetical protein	NA	Q9AZT9	Lactococcus_phage	100.0	5.6e-35
AYV53128.1|1442367_1442511_-	hypothetical protein	NA	A0A1P8BMD9	Lactococcus_phage	100.0	2.1e-18
AYV53129.1|1442529_1442865_-	DUF1140 family protein	NA	Q9AZU1	Lactococcus_phage	99.1	5.9e-56
AYV53130.1|1442886_1443231_-	hypothetical protein	NA	Q9AZU2	Lactococcus_phage	99.1	1.4e-60
AYV53131.1|1443234_1443654_-	dUTP diphosphatase	NA	Q9AZU3	Lactococcus_phage	100.0	2.3e-73
AYV53132.1|1443650_1443938_-	hypothetical protein	NA	Q9AZU4	Lactococcus_phage	100.0	2.9e-51
AYV53133.1|1443934_1444591_-	DUF1642 domain-containing protein	NA	Q9AZU5	Lactococcus_phage	100.0	5.1e-120
AYV53134.1|1444562_1444922_-	hypothetical protein	NA	Q9AZU6	Lactococcus_phage	100.0	8.2e-64
AYV53135.1|1444930_1445440_-	hypothetical protein	NA	Q9AZU7	Lactococcus_phage	100.0	1.1e-26
AYV53136.1|1445454_1446027_-	DUF658 domain-containing protein	NA	Q9AZU8	Lactococcus_phage	100.0	8.7e-92
AYV53137.1|1446016_1446196_-	DUF1497 domain-containing protein	NA	Q9AYU3	Lactococcus_phage	100.0	9.2e-24
AYV53138.1|1446217_1446508_-	hypothetical protein	NA	Q9AZU9	Lactococcus_phage	100.0	1.2e-49
AYV53139.1|1446619_1446859_-	DUF1031 domain-containing protein	NA	Q9AZV0	Lactococcus_phage	100.0	2.3e-38
AYV53140.1|1446851_1447346_-	hypothetical protein	NA	Q9AZV1	Lactococcus_phage	100.0	5.2e-93
AYV53141.1|1447342_1447717_-	DUF1064 domain-containing protein	NA	Q9AZV2	Lactococcus_phage	100.0	9.5e-63
AYV53142.1|1447697_1447871_-	hypothetical protein	NA	Q9AZV3	Lactococcus_phage	100.0	4.7e-25
AYV53143.1|1447867_1448752_-	ATP-binding protein	NA	A0A059NT94	Lactococcus_phage	99.3	3.9e-163
AYV53144.1|1448761_1449601_-	DUF4373 domain-containing protein	NA	Q9AZV5	Lactococcus_phage	100.0	5.7e-132
AYV53145.1|1449728_1450154_-	single-stranded DNA-binding protein	NA	Q9AZV6	Lactococcus_phage	100.0	7.2e-75
AYV53146.1|1450146_1450905_-	hypothetical protein	NA	Q9AZV7	Lactococcus_phage	100.0	2.5e-147
AYV53147.1|1450913_1451309_-	hypothetical protein	NA	Q9AZV8	Lactococcus_phage	100.0	8.5e-70
AYV53148.1|1451423_1451639_-	DUF1408 domain-containing protein	NA	Q38272	Lactococcus_phage	100.0	2.4e-34
AYV53149.1|1451741_1452017_+	hypothetical protein	NA	Q9AYU7	Lactococcus_phage	100.0	1.6e-46
AYV53150.1|1452013_1452208_-	hypothetical protein	NA	Q77JL6	Lactococcus_phage	100.0	3.0e-28
AYV53151.1|1452350_1452641_-	hypothetical protein	NA	Q9AZW0	Lactococcus_phage	100.0	9.3e-50
AYV53152.1|1452653_1453364_-	phage antirepressor Ant	NA	Q9AZW1	Lactococcus_phage	99.6	3.8e-129
AYV53153.1|1453377_1453617_-	XRE family transcriptional regulator	NA	A0A1B1IMF0	Lactococcus_phage	100.0	1.5e-37
AYV53154.1|1453782_1454304_+	helix-turn-helix domain-containing protein	NA	Q9AZW3	Lactococcus_phage	99.4	1.3e-86
AYV53155.1|1454313_1454901_+	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	100.0	6.8e-108
AYV53156.1|1454965_1455817_+	hypothetical protein	NA	Q9AZW5	Lactococcus_phage	100.0	1.2e-89
AYV53157.1|1455939_1457019_+|integrase	site-specific integrase	integrase	Q9AZW6	Lactococcus_phage	100.0	2.5e-204
AYV53158.1|1457723_1458059_-	putative DNA-binding protein	NA	NA	NA	NA	NA
1457114:1457186	attR	AAAAACCGCTCTATTGAGCGATTTCTAATACTATTGGATTCTATAAAATCCATTCAATGGAGGCGAGGGGAGT	NA	NA	NA	NA
AYV53159.1|1458242_1458953_+	DNA-binding response regulator	NA	A0A1V0SGR9	Hokovirus	29.1	3.5e-05
AYV53160.1|1458942_1460496_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	39.1	1.1e-32
>prophage 10
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	1559029	1569330	2365672		Synechococcus_phage(33.33%)	8	NA	NA
AYV53238.1|1559029_1560586_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.6	2.3e-70
AYV53239.1|1560761_1561304_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.9	1.8e-09
AYV53240.1|1561440_1562478_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AYV53241.1|1562608_1563139_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYV53242.1|1563189_1564779_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.2	3.0e-09
AYV53243.1|1564945_1565494_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.1	2.8e-18
AYV53244.1|1565521_1566538_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	40.4	6.4e-61
AYV53245.1|1566726_1569330_-	chaperone protein ClpB	NA	K4FB40	Cronobacter_phage	32.8	9.4e-125
>prophage 11
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	1771198	1781057	2365672	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
AYV53426.1|1771198_1771960_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
AYV53427.1|1772125_1772935_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
AYV53428.1|1772968_1773862_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
AYV53429.1|1773861_1774785_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AYV53430.1|1774905_1775757_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	E3SNT9	Prochlorococcus_phage	27.3	4.2e-05
AYV53431.1|1776103_1777000_-	phosphate ABC transporter substrate-binding protein	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
AYV53432.1|1777277_1777745_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
AYV53433.1|1777776_1778352_-	esterase	NA	NA	NA	NA	NA
AYV53434.1|1778438_1781057_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.7	7.1e-64
>prophage 12
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	1977997	2031422	2365672	bacteriocin,protease,tRNA,transposase,integrase	Lactococcus_phage(70.37%)	53	2011319:2011339	2025808:2025828
AYV53618.1|1977997_1978945_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
AYV53619.1|1979472_1980369_-	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
AYV53620.1|1986435_1987095_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
AYV53621.1|1987201_1989142_-|tRNA	threonine--tRNA ligase	tRNA	A0A1V0SKZ9	Klosneuvirus	32.5	1.4e-64
AYV53622.1|1989685_1990003_-	ribonucleotide reductase	NA	NA	NA	NA	NA
AYV53623.1|1991428_1992037_-	nitroreductase family protein	NA	NA	NA	NA	NA
AYV53624.1|1992178_1992814_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AYV53625.1|1993039_1994179_-	cation:proton antiporter	NA	NA	NA	NA	NA
AYV53626.1|1994233_1995397_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AYV53627.1|1995643_1996732_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
AYV53628.1|1996762_1997728_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
AYV53629.1|1997877_1998438_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AYV54040.1|1998446_1999163_-	AEC family transporter	NA	NA	NA	NA	NA
AYV53630.1|1999162_1999354_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53631.1|1999489_2000359_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
AYV53632.1|2000672_2001617_-	HD domain-containing protein	NA	NA	NA	NA	NA
AYV53633.1|2001863_2003168_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
AYV53634.1|2003259_2003910_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AYV53635.1|2003968_2004226_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53636.1|2004222_2004483_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53637.1|2004454_2005378_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AYV53638.1|2005437_2006502_-|protease	aspartate protease	protease	A0A217EQJ4	Bacillus_phage	55.8	1.8e-18
AYV53639.1|2006728_2009122_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AYV53640.1|2009158_2010199_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	34.3	1.9e-28
AYV53641.1|2010652_2011186_+	phenolic acid decarboxylase	NA	NA	NA	NA	NA
2011319:2011339	attL	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
AYV53642.1|2011497_2012445_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
AYV53643.1|2013756_2014677_-	DUF4065 domain-containing protein	NA	Q9AZG0	Lactococcus_phage	99.7	1.6e-172
AYV53644.1|2014688_2014985_-	hypothetical protein	NA	Q9AZG1	Lactococcus_phage	100.0	1.6e-49
AYV53645.1|2015173_2015395_-	hypothetical protein	NA	Q9AZD7	Lactococcus_phage	97.3	2.5e-31
AYV53646.1|2015544_2015775_-	hypothetical protein	NA	Q9AZG3	Lactococcus_phage	100.0	1.5e-39
AYV53647.1|2015917_2016424_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	100.0	4.2e-90
AYV53648.1|2017022_2017970_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
AYV53649.1|2018057_2018420_-	hypothetical protein	NA	Q9AZG6	Lactococcus_phage	100.0	3.4e-57
AYV53650.1|2018436_2019009_-	hypothetical protein	NA	Q9AZG7	Lactococcus_phage	100.0	2.1e-98
AYV53651.1|2019170_2019377_-	hypothetical protein	NA	Q9AZG9	Lactococcus_phage	100.0	1.6e-32
AYV53652.1|2019395_2019578_-	hypothetical protein	NA	Q9AZH0	Lactococcus_phage	100.0	1.4e-27
AYV53653.1|2019946_2020261_-	hypothetical protein	NA	Q9AZH1	Lactococcus_phage	100.0	3.4e-53
AYV53654.1|2020173_2021643_-	hypothetical protein	NA	Q9AZH2	Lactococcus_phage	100.0	3.2e-279
AYV53655.1|2021653_2021923_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	100.0	1.3e-40
AYV53656.1|2021919_2022072_-	hypothetical protein	NA	Q9AZH4	Lactococcus_phage	100.0	1.4e-20
AYV53657.1|2022159_2022324_-	hypothetical protein	NA	Q9AZH5	Lactococcus_phage	100.0	2.1e-22
AYV53658.1|2022325_2022496_-	DUF1655 domain-containing protein	NA	Q9AZH6	Lactococcus_phage	100.0	4.6e-25
AYV53659.1|2022575_2022701_-	hypothetical protein	NA	Q9AZH7	Lactococcus_phage	100.0	2.1e-14
AYV53660.1|2022734_2023250_-	hypothetical protein	NA	Q9AZH8	Lactococcus_phage	100.0	4.2e-93
AYV53661.1|2023364_2023571_-	transcriptional regulator	NA	NA	NA	NA	NA
AYV53662.1|2023719_2024427_+	XRE family transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	100.0	1.8e-123
AYV53663.1|2024507_2025707_+|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	100.0	1.4e-224
AYV53664.1|2025910_2026450_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
2025808:2025828	attR	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
AYV53665.1|2026616_2028095_+	chitinase	NA	NA	NA	NA	NA
AYV53666.1|2028114_2028777_+	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	31.2	1.2e-15
AYV53667.1|2028819_2030112_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	38.1	1.7e-74
AYV53668.1|2030384_2031005_-	cadmium transporter	NA	NA	NA	NA	NA
AYV53669.1|2031263_2031422_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 13
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	2083137	2148300	2365672	transposase,protease,tRNA,bacteriocin	unidentified_phage(20.0%)	59	NA	NA
AYV53715.1|2083137_2084085_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	8.9e-33
AYV53716.1|2084105_2084315_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53717.1|2084350_2084869_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AYV53718.1|2085043_2085901_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
AYV53719.1|2085946_2086405_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYV53720.1|2086497_2087055_-	ribosome recycling factor	NA	NA	NA	NA	NA
AYV53721.1|2087266_2087983_-	UMP kinase	NA	NA	NA	NA	NA
AYV53722.1|2088067_2088520_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53723.1|2088653_2089841_-	acetate kinase	NA	NA	NA	NA	NA
AYV53724.1|2089997_2091185_-	acetate kinase	NA	NA	NA	NA	NA
AYV53725.1|2091379_2092318_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AYV53726.1|2092405_2092657_-	DUF3165 family protein	NA	NA	NA	NA	NA
AYV53727.1|2092753_2094595_-	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	35.4	1.2e-17
AYV53728.1|2094773_2095232_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53729.1|2095247_2096021_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53730.1|2096357_2096984_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	3.7e-19
AYV53731.1|2096984_2098967_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
AYV53732.1|2098970_2099297_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AYV53733.1|2099596_2100325_-	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
AYV53734.1|2100517_2100739_+	DUF910 family protein	NA	NA	NA	NA	NA
AYV53735.1|2100772_2101744_+	ROK family glucokinase	NA	NA	NA	NA	NA
AYV53736.1|2101746_2102133_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AYV53737.1|2102215_2102662_-	DNA starvation/stationary phase protection protein	NA	A0A2K9VCK5	Lactobacillus_phage	34.2	6.5e-18
AYV53738.1|2102799_2103911_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
AYV53739.1|2104055_2104721_+	prepilin peptidase	NA	NA	NA	NA	NA
AYV53740.1|2104671_2105763_-	DNA polymerase IV	NA	NA	NA	NA	NA
AYV53741.1|2105841_2106333_-|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
AYV53742.1|2106411_2107905_-	amino acid permease	NA	NA	NA	NA	NA
AYV53743.1|2108096_2109227_-	aminotransferase	NA	NA	NA	NA	NA
AYV53744.1|2109490_2110435_-	carbamate kinase	NA	NA	NA	NA	NA
AYV53745.1|2110466_2111411_-	carbamate kinase	NA	NA	NA	NA	NA
AYV53746.1|2111427_2113008_-	amino acid permease	NA	NA	NA	NA	NA
AYV53747.1|2113138_2114203_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AYV53748.1|2114386_2115619_-	arginine deiminase	NA	NA	NA	NA	NA
AYV53749.1|2115685_2115883_+	hypothetical protein	NA	NA	NA	NA	NA
AYV53750.1|2115920_2117615_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	34.8	2.1e-80
AYV53751.1|2117682_2118141_+	arginine repressor	NA	NA	NA	NA	NA
AYV54046.1|2118323_2119655_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AYV53752.1|2119857_2120451_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53753.1|2120666_2123771_-	helicase	NA	A0A2L1IWL4	Gordonia_phage	30.1	5.3e-42
AYV53754.1|2124024_2128377_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AYV53755.1|2128799_2130503_-	pyruvate oxidase	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	27.2	1.9e-33
AYV53756.1|2130699_2131686_-	serine hydrolase	NA	NA	NA	NA	NA
AYV53757.1|2131758_2132538_-	proteinase	NA	NA	NA	NA	NA
AYV53758.1|2132891_2133677_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYV53759.1|2133719_2134589_-	aquaporin family protein	NA	NA	NA	NA	NA
AYV53760.1|2134760_2137052_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
AYV53761.1|2137053_2137764_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	H9D1C6	Salinivibrio_phage	31.8	5.2e-09
AYV53762.1|2137913_2138756_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYV53763.1|2140274_2141726_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AYV53764.1|2141889_2142420_-	cysteine hydrolase	NA	NA	NA	NA	NA
AYV53765.1|2142518_2143442_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AYV53766.1|2143670_2144165_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYV53767.1|2144256_2144580_-	DUF1048 domain-containing protein	NA	NA	NA	NA	NA
AYV53768.1|2144566_2144914_-	DUF1048 domain-containing protein	NA	NA	NA	NA	NA
AYV53769.1|2144900_2145263_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AYV53770.1|2145382_2146012_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AYV53771.1|2146076_2147162_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA	NA
AYV53772.1|2147352_2148300_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	8.9e-33
>prophage 14
CP033607	Lactococcus lactis strain IL1403 chromosome	2365672	2196208	2268606	2365672	transposase,tRNA,protease	unidentified_phage(18.18%)	52	NA	NA
AYV53834.1|2196208_2198059_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
AYV53835.1|2198128_2199415_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AYV53836.1|2199433_2200237_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AYV53837.1|2200236_2200971_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	37.0	5.9e-16
AYV53838.1|2201342_2201675_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
AYV53839.1|2202485_2202965_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AYV53840.1|2203003_2203951_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
AYV53841.1|2204420_2205647_+|protease	serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	26.3	4.9e-07
AYV53842.1|2205772_2206771_+	glycosyltransferase	NA	NA	NA	NA	NA
AYV53843.1|2206896_2208237_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AYV53844.1|2208344_2208569_+	DUF1797 family protein	NA	NA	NA	NA	NA
AYV53845.1|2208710_2209715_+	hypothetical protein	NA	NA	NA	NA	NA
AYV53846.1|2209755_2210508_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
AYV53847.1|2210854_2213488_-	DNA polymerase I	NA	A0A068EMS7	Bacillus_phage	31.4	7.7e-50
AYV53848.1|2213725_2214535_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AYV53849.1|2215024_2216172_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
AYV53850.1|2216244_2217617_-|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.8	2.4e-55
AYV53851.1|2217658_2218192_+	hypothetical protein	NA	NA	NA	NA	NA
AYV53852.1|2223609_2224101_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYV53853.1|2224358_2226089_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
AYV53854.1|2226274_2227303_-	elongation factor Ts	NA	NA	NA	NA	NA
AYV53855.1|2227424_2228192_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
AYV53856.1|2228550_2229576_+	hypothetical protein	NA	NA	NA	NA	NA
AYV53857.1|2229808_2232520_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
AYV53858.1|2232857_2233355_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53859.1|2233341_2233551_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53860.1|2233547_2234375_-	radical SAM protein	NA	NA	NA	NA	NA
AYV53861.1|2234367_2236491_-	radical SAM protein	NA	NA	NA	NA	NA
AYV53862.1|2236593_2237451_-	transcriptional regulator	NA	A0A1X9I6E0	Streptococcus_phage	28.7	2.3e-11
AYV53863.1|2237571_2238600_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AYV53864.1|2238586_2239084_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	31.4	8.9e-16
AYV53865.1|2239131_2239698_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
AYV53866.1|2239841_2241062_-	MFS transporter	NA	NA	NA	NA	NA
AYV53867.1|2241145_2242372_-	multidrug efflux MFS transporter LmrP	NA	NA	NA	NA	NA
AYV53868.1|2242559_2243054_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYV53869.1|2243077_2244184_+	anti-sigma factor	NA	NA	NA	NA	NA
AYV53870.1|2244279_2245626_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYV53871.1|2245969_2246476_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
AYV53872.1|2246509_2247355_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYV53873.1|2247581_2247860_+	transcriptional regulator	NA	NA	NA	NA	NA
AYV53874.1|2247972_2248305_+	hypothetical protein	NA	NA	NA	NA	NA
AYV53875.1|2248348_2250991_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.2	2.0e-151
AYV53876.1|2251246_2251903_-	elongation factor G-binding protein	NA	NA	NA	NA	NA
AYV53877.1|2252179_2252428_-	DUF1912 family protein	NA	NA	NA	NA	NA
AYV53878.1|2252466_2252811_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
AYV53879.1|2252811_2253321_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYV53880.1|2253475_2254183_-	hypothetical protein	NA	NA	NA	NA	NA
AYV53881.1|2254514_2256056_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	32.7	1.2e-71
AYV53882.1|2256284_2259065_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AYV53883.1|2259133_2259607_-	cell wall anchor protein	NA	NA	NA	NA	NA
AYV53884.1|2259892_2260705_+	regulatory protein RecX	NA	NA	NA	NA	NA
AYV53885.1|2267658_2268606_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	32.7	1.7e-31
