assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003722195.1_ASM372219v1	CP033605	Escherichia coli O157:H7 strain TR01 chromosome, complete genome	1	2214170-2214266	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GGCTAATGCGGAACCAGAAGAAC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|343aa|up_9|CP033605.1_2203388_2204417_-	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional	NA|531aa|up_8|CP033605.1_2204591_2206184_+	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|391aa|up_7|CP033605.1_2206193_2207366_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|334aa|up_6|CP033605.1_2207469_2208471_+	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|347aa|up_5|CP033605.1_2208506_2209547_-	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|42aa|up_4|CP033605.1_2209789_2209915_+	NF033231, small_Blr, division septum protein Blr	NA|72aa|up_3|CP033605.1_2210187_2210403_+	PRK10391, PRK10391, transcription modulator YdgT	NA|147aa|up_2|CP033605.1_2210488_2210929_+	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|194aa|up_1|CP033605.1_2211005_2211587_+	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|193aa|up_0|CP033605.1_2211586_2212165_+	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|353aa|down_0|CP033605.1_2214454_2215513_+	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|207aa|down_1|CP033605.1_2215516_2216137_+	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|232aa|down_2|CP033605.1_2216140_2216836_+	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|212aa|down_3|CP033605.1_2216835_2217471_+	PRK10702, PRK10702, endonuclease III; Provisional	NA|501aa|down_4|CP033605.1_2218081_2219584_+	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|202aa|down_5|CP033605.1_2219689_2220295_+	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|287aa|down_6|CP033605.1_2220338_2221199_-	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|425aa|down_7|CP033605.1_2221260_2222535_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|219aa|down_8|CP033605.1_2222663_2223320_-	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|110aa|down_9|CP033605.1_2223378_2223708_-	PRK11372, PRK11372, C-type lysozyme inhibitor
GCA_003722195.1_ASM372219v1	CP033605	Escherichia coli O157:H7 strain TR01 chromosome, complete genome	2	2757260-2757393	2	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|365aa|up_9|CP033605.1_2745537_2746632_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|464aa|up_8|CP033605.1_2746634_2748026_-	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|249aa|up_7|CP033605.1_2748012_2748759_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|395aa|up_6|CP033605.1_2748727_2749912_-	TIGR04370, hypothetical_protein, oligosaccharide repeat unit polymerase	NA|261aa|up_5|CP033605.1_2749908_2750691_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|298aa|up_4|CP033605.1_2751008_2751902_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_3|CP033605.1_2752143_2753139_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_2|CP033605.1_2753296_2754691_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|CP033605.1_2754701_2755922_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|CP033605.1_2755918_2757199_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|CP033605.1_2757474_2758953_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|CP033605.1_2758954_2760349_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|CP033605.1_2760403_2761774_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|CP033605.1_2761966_2763403_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|CP033605.1_2763405_2764629_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|CP033605.1_2764625_2765105_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|CP033605.1_2765107_2766073_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|CP033605.1_2766075_2767197_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|CP033605.1_2767223_2767772_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|CP033605.1_2767787_2768534_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCA_003722195.1_ASM372219v1	CP033605	Escherichia coli O157:H7 strain TR01 chromosome, complete genome	3	3701541-3701752	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	27,27,29	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|CP033605.1_3693353_3694115_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP033605.1_3694095_3695145_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP033605.1_3695141_3695621_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP033605.1_3695620_3696331_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP033605.1_3696349_3696661_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP033605.1_3696854_3697178_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP033605.1_3697227_3697833_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP033605.1_3697832_3699260_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP033605.1_3699261_3700170_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP033605.1_3700421_3701459_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP033605.1_3701848_3702142_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|CP033605.1_3702138_3703062_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP033605.1_3703058_3703709_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP033605.1_3703690_3704437_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP033605.1_3704447_3705503_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP033605.1_3705514_3706051_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|CP033605.1_3706047_3707610_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|CP033605.1_3707707_3710407_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|43aa|down_8|CP033605.1_3710598_3710727_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|CP033605.1_3711015_3711750_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_003722195.1_ASM372219v1	CP033605	Escherichia coli O157:H7 strain TR01 chromosome, complete genome	4	5412606-5412755	4	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|132aa|up_9|CP033605.1_5401249_5401645_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|CP033605.1_5401775_5402489_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|CP033605.1_5402559_5403153_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|CP033605.1_5403297_5403750_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|CP033605.1_5405563_5406568_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP033605.1_5406729_5407146_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP033605.1_5407191_5407695_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|CP033605.1_5407887_5409084_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP033605.1_5409139_5411995_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP033605.1_5411994_5412438_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP033605.1_5412791_5414303_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|CP033605.1_5414569_5415670_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP033605.1_5415669_5416752_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP033605.1_5416912_5418415_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|CP033605.1_5418544_5419564_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|640aa|down_5|CP033605.1_5419934_5421854_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|126aa|down_6|CP033605.1_5421980_5422358_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_7|CP033605.1_5422479_5422812_-	pfam07978, NIPSNAP, NIPSNAP	NA|156aa|down_8|CP033605.1_5423815_5424283_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|190aa|down_9|CP033605.1_5424475_5425045_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain
GCA_003722195.1_ASM372219v1	CP033605	Escherichia coli O157:H7 strain TR01 chromosome, complete genome	5	5496127-5496207	5	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCTCCAATAATTAATGACGGAAAGA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_8|CP033605.1_5482997_5483081_+,NA|67aa|up_1|CP033605.1_5492762_5492963_-,NA|62aa|down_5|CP033605.1_5502814_5503000_-	NA|277aa|up_9|CP033605.1_5481574_5482405_-	pfam10887, DUF2686, Protein of unknown function (DUF2686)	NA|28aa|up_8|CP033605.1_5482997_5483081_+	NA	NA|131aa|up_7|CP033605.1_5483077_5483470_+	PRK14128, iraD, anti-adapter protein IraD	NA|304aa|up_6|CP033605.1_5483462_5484374_-	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT	NA|391aa|up_5|CP033605.1_5484438_5485611_-	TIGR01975, Isoaspartyl_dipeptidase, isoaspartyl dipeptidase IadA	NA|154aa|up_4|CP033605.1_5485623_5486085_-	PRK10519, PRK10519, hypothetical protein; Provisional	NA|184aa|up_3|CP033605.1_5487013_5487565_+	COG1859, KptA, RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]	NA|1701aa|up_2|CP033605.1_5487721_5492824_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|67aa|up_1|CP033605.1_5492762_5492963_-	NA	NA|281aa|up_0|CP033605.1_5494420_5495263_-	COG3204, COG3204, Uncharacterized protein conserved in bacteria [Function unknown]	NA|89aa|down_0|CP033605.1_5498008_5498275_-	pfam11823, DUF3343, Protein of unknown function (DUF3343)	NA|256aa|down_1|CP033605.1_5498271_5499039_-	TIGR00241, Uncharacterized_protein_MJ0004, CoA-substrate-specific enzyme activase, putative	NA|384aa|down_2|CP033605.1_5499048_5500200_-	COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]	NA|427aa|down_3|CP033605.1_5500315_5501596_-	COG2733, COG2733, Predicted membrane protein [Function unknown]	NA|411aa|down_4|CP033605.1_5501636_5502869_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|62aa|down_5|CP033605.1_5502814_5503000_-	NA	NA|311aa|down_6|CP033605.1_5503335_5504268_+	PRK09857, PRK09857, recombination-promoting nuclease RpnA	NA|55aa|down_7|CP033605.1_5506099_5506264_+	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|698aa|down_8|CP033605.1_5506360_5508454_+	COG1479, COG1479, Uncharacterized conserved protein [Function unknown]	NA|114aa|down_9|CP033605.1_5508500_5508842_-	PRK13605, PRK13605, endoribonuclease SymE; Provisional
