The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033504	Serratia sp. LS-1 chromosome, complete genome	5129267	160302	218201	5129267	tRNA,tail,plate	Salmonella_phage(25.0%)	57	NA	NA
AYU88945.1|160302_161349_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
AYU88946.1|161326_162091_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	46.3	7.4e-54
AYU88947.1|162084_162711_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	5.3e-34
AYU88948.1|163018_164035_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	37.5	3.1e-07
AYU88949.1|164089_165088_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	1.2e-32
AYU93312.1|165167_167723_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.0	1.4e-27
AYU88950.1|168281_168899_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AYU88951.1|170116_171088_-	aldo/keto reductase	NA	NA	NA	NA	NA
AYU93313.1|171100_171859_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	5.5e-17
AYU88952.1|172007_172901_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYU88953.1|173318_173636_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AYU88954.1|173648_175010_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA	NA
AYU88955.1|175053_176439_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
AYU88956.1|176454_177303_+	transcriptional regulator ChbR	NA	NA	NA	NA	NA
AYU88957.1|177451_178213_+	chitin disaccharide deacetylase	NA	NA	NA	NA	NA
AYU88958.1|178222_179602_-	MFS transporter	NA	NA	NA	NA	NA
AYU88959.1|179845_180334_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	46.1	1.0e-24
AYU88960.1|180445_181510_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.9	1.7e-112
AYU88961.1|181570_182086_+	recombination regulator RecX	NA	NA	NA	NA	NA
AYU88962.1|182219_184847_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.7	3.2e-80
AYU88963.1|185099_185285_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
AYU88964.1|186640_187207_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
AYU88965.1|187203_187632_+	DedA family protein	NA	NA	NA	NA	NA
AYU88966.1|187714_189277_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AYU88967.1|189443_189959_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
AYU93314.1|190024_191269_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AYU88968.1|191356_192148_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AYU88969.1|192317_193679_+	signal recognition particle protein	NA	NA	NA	NA	NA
AYU88970.1|193893_194142_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AYU88971.1|194160_194709_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AYU88972.1|194761_195529_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AYU88973.1|195577_195934_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AYU88974.1|196077_196305_-	transcriptional regulator	NA	Q37973	Salmonella_virus	65.7	4.6e-20
AYU88975.1|196394_197489_-	phage late control D family protein	NA	Q6K1G4	Salmonella_virus	49.7	4.3e-103
AYU88976.1|197485_197959_-|tail	phage tail protein	tail	Q6K1G5	Salmonella_virus	56.6	1.8e-42
AYU88977.1|197981_200075_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	45.5	2.4e-14
AYU88978.1|200067_200190_-|tail	GpE family phage tail protein	tail	A0A0M4R2P3	Salmonella_phage	74.3	2.8e-08
AYU88979.1|200222_200510_-|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	58.9	3.0e-24
AYU88980.1|200574_201084_-|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	69.0	1.6e-65
AYU88981.1|201096_202266_-|tail	phage tail sheath protein	tail	F1BUU3	Erwinia_phage	79.9	5.8e-183
AYU88982.1|202406_202964_-|tail	tail assembly chaperone	tail	A0A1S6KZZ1	Salmonella_phage	39.6	1.7e-28
AYU88983.1|202963_204841_-|tail	phage tail protein	tail	A0A0M3ULH6	Salmonella_phage	53.2	1.0e-59
AYU88984.1|204837_208131_-|tail	phage tail protein I	tail	G5DEL7	Salmonella_phage	48.8	1.5e-273
AYU88985.1|208123_209032_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	76.5	2.0e-122
AYU88986.1|209036_209387_-|plate	baseplate assembly protein	plate	F1BUP4	Erwinia_phage	67.2	4.4e-38
AYU88987.1|209383_210019_-|plate	phage baseplate assembly protein V	plate	A0A0M4S6F6	Salmonella_phage	54.5	7.0e-58
AYU88988.1|210104_210569_-|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	53.3	1.3e-37
AYU88989.1|210622_211135_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	64.1	1.1e-58
AYU88990.1|211118_211337_-	hypothetical protein	NA	B6SD15	Bacteriophage	50.9	8.1e-06
AYU88991.1|211340_211544_-|tail	phage tail protein	tail	F1BUQ5	Erwinia_phage	68.7	1.8e-20
AYU88992.1|211735_211930_-	hypothetical protein	NA	NA	NA	NA	NA
AYU88993.1|211993_214090_-	replication endonuclease	NA	A0A0F7LBQ2	Escherichia_phage	48.4	1.0e-193
AYU88994.1|214073_214295_-	TraR/DksA family transcriptional regulator	NA	A0A0M4S5Q7	Salmonella_phage	56.5	6.9e-13
AYU88995.1|214373_214679_-	hypothetical protein	NA	NA	NA	NA	NA
AYU88996.1|214921_215818_+	phage repressor protein CI	NA	Q6K1G0	Salmonella_virus	53.1	5.8e-82
AYU88997.1|215864_216527_-	DUF481 domain-containing protein	NA	NA	NA	NA	NA
AYU88998.1|217124_218201_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	50.9	9.0e-90
>prophage 2
CP033504	Serratia sp. LS-1 chromosome, complete genome	5129267	1053883	1125100	5129267	capsid,head,tail,holin,integrase,portal,terminase,protease	Cronobacter_phage(51.16%)	76	1047939:1047957	1095487:1095505
1047939:1047957	attL	GAGAATGCCCACCACCAGC	NA	NA	NA	NA
AYU89755.1|1053883_1054918_-|integrase	site-specific integrase	integrase	A0A0M4S6G4	Salmonella_phage	59.2	2.5e-113
AYU89756.1|1055005_1057000_-	hypothetical protein	NA	NA	NA	NA	NA
AYU93350.1|1057013_1057580_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	40.0	9.1e-33
AYU89757.1|1057724_1057946_+	regulator	NA	NA	NA	NA	NA
AYU89758.1|1057978_1058488_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	51.9	6.5e-38
AYU89759.1|1058497_1058701_+	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
AYU89760.1|1058829_1059093_+	hypothetical protein	NA	NA	NA	NA	NA
AYU89761.1|1059629_1059869_+	DUF2732 family protein	NA	A0A0F7LBR4	Escherichia_phage	61.1	3.3e-08
AYU89762.1|1059963_1060236_+	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	42.2	1.1e-07
AYU89763.1|1060229_1062239_+	replication endonuclease	NA	F1BUS0	Erwinia_phage	58.3	2.8e-209
AYU93351.1|1062329_1062548_+	hypothetical protein	NA	NA	NA	NA	NA
AYU89764.1|1062518_1062845_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	77.5	4.4e-40
AYU89765.1|1062841_1063894_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.9	3.0e-154
AYU89766.1|1063890_1065663_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	80.6	1.4e-284
AYU89767.1|1065823_1066621_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	53.5	8.2e-72
AYU89768.1|1066676_1067699_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	79.1	2.5e-153
AYU89769.1|1067702_1068404_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.7e-85
AYU89770.1|1068500_1068953_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	79.3	9.7e-62
AYU89771.1|1068949_1069453_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	44.5	3.9e-35
AYU89772.1|1069449_1070160_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	66.5	4.6e-82
AYU89773.1|1070156_1071281_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	65.9	3.4e-140
AYU89774.1|1071277_1071733_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	64.2	9.2e-52
AYU89775.1|1071742_1072045_+|holin	holin	holin	C7BGD7	Burkholderia_phage	52.1	7.5e-18
AYU89776.1|1072031_1072373_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	77.2	1.6e-40
AYU89777.1|1072372_1072717_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	58.6	7.2e-25
AYU89778.1|1072688_1072868_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	61.8	2.5e-13
AYU89779.1|1072864_1073134_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	61.0	1.1e-20
AYU89780.1|1073142_1073322_+	hypothetical protein	NA	Q1I0Y8	Pasteurella_virus	46.4	5.4e-08
AYU89781.1|1075852_1076200_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	67.7	5.2e-31
AYU89782.1|1076177_1077362_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	67.3	2.4e-152
AYU89783.1|1077354_1077960_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	68.7	9.0e-71
AYU89784.1|1077965_1081145_+	hypothetical protein	NA	F1BUK3	Cronobacter_phage	65.9	1.6e-105
AYU89785.1|1081147_1081576_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	47.2	5.8e-24
AYU89786.1|1081565_1082288_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	39.4	8.3e-39
AYU89787.1|1082262_1082823_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	58.8	1.3e-50
AYU89788.1|1082819_1084475_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	54.1	3.0e-169
AYU93352.1|1084742_1084946_+	hypothetical protein	NA	NA	NA	NA	NA
AYU89789.1|1085103_1085388_-	hemolysin XhlA	NA	NA	NA	NA	NA
AYU89790.1|1086187_1087876_-	transporter	NA	NA	NA	NA	NA
AYU89791.1|1088170_1088560_+	hypothetical protein	NA	NA	NA	NA	NA
AYU89792.1|1088599_1088863_-	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	70.5	1.7e-26
AYU89793.1|1089093_1089408_+	DUF1418 family protein	NA	NA	NA	NA	NA
AYU89794.1|1089465_1090368_+	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	37.0	9.4e-40
AYU89795.1|1090504_1090984_+	YbjN domain-containing protein	NA	NA	NA	NA	NA
AYU89796.1|1091390_1092500_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
AYU89797.1|1092620_1093754_+	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.0	5.5e-29
AYU89798.1|1093778_1094741_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
AYU89799.1|1094737_1095583_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
1095487:1095505	attR	GCTGGTGGTGGGCATTCTC	NA	NA	NA	NA
AYU89800.1|1095744_1096224_+	DUF2593 family protein	NA	NA	NA	NA	NA
AYU89801.1|1096292_1097420_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	26.8	2.1e-28
AYU89802.1|1097416_1097701_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	59.6	1.0e-24
AYU89803.1|1097690_1097942_-	prevent-host-death protein	NA	NA	NA	NA	NA
AYU89804.1|1098043_1098778_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYU89805.1|1098978_1099647_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
AYU89806.1|1099646_1100363_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
AYU89807.1|1100372_1101104_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYU93353.1|1101136_1101865_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.8	1.8e-28
AYU89808.1|1102129_1102672_-	lipoprotein	NA	NA	NA	NA	NA
AYU89809.1|1102831_1103155_+	hypothetical protein	NA	M4STD1	Rhodobacter_phage	43.3	2.9e-15
AYU89810.1|1103208_1104774_-	DUF3300 domain-containing protein	NA	NA	NA	NA	NA
AYU89811.1|1104961_1105798_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A223VZK2	Agrobacterium_phage	29.7	1.1e-10
AYU89812.1|1105798_1106809_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYU89813.1|1106967_1108407_-	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
AYU89814.1|1108557_1108905_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
AYU89815.1|1108934_1109951_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
AYU89816.1|1110026_1111748_-	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA	NA
AYU89817.1|1111947_1112949_-	NADH oxidoreductase	NA	NA	NA	NA	NA
AYU89818.1|1113004_1114654_-	hydroxylamine reductase	NA	NA	NA	NA	NA
AYU89819.1|1114835_1115732_-	lysine exporter LysO family protein	NA	NA	NA	NA	NA
AYU89820.1|1115919_1117578_+	DUF2813 domain-containing protein	NA	NA	NA	NA	NA
AYU89821.1|1117592_1118546_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AYU89822.1|1118740_1119856_+	macrolide transporter subunit MacA	NA	NA	NA	NA	NA
AYU89823.1|1119855_1121802_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	37.4	1.6e-36
AYU89824.1|1121895_1122117_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	1.1e-15
AYU89825.1|1122472_1122793_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	8.2e-15
AYU89826.1|1122820_1125100_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	8.7e-167
>prophage 3
CP033504	Serratia sp. LS-1 chromosome, complete genome	5129267	4124112	4133039	5129267		environmental_Halophage(16.67%)	7	NA	NA
AYU92461.1|4124112_4126191_+	hypothetical protein	NA	H9YQA8	environmental_Halophage	71.9	1.3e-52
AYU92462.1|4126231_4127449_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.1	2.1e-26
AYU93486.1|4127580_4128156_-	aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	63.2	6.1e-69
AYU92463.1|4128228_4129752_-	DUF853 family protein	NA	A0A248XCZ8	Klebsiella_phage	42.6	1.9e-77
AYU93487.1|4129903_4130629_-	two-component system response regulator YehT	NA	NA	NA	NA	NA
AYU92464.1|4130628_4132314_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	72.8	1.2e-224
AYU92465.1|4132469_4133039_-	peptidylprolyl isomerase A	NA	A0A1V0S9I2	Catovirus	31.7	1.3e-07
