The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	930233	937545	4782252	protease,integrase	Dickeya_phage(16.67%)	6	931484:931498	942663:942677
AYR76691.1|930233_931352_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYR76692.1|931348_933295_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
931484:931498	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYR76693.1|933424_933646_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYR76694.1|933969_934290_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYR76695.1|934320_936597_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYR76696.1|937167_937545_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
942663:942677	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	1008514	1085826	4782252	protease,transposase,integrase,terminase,tail	Salmonella_phage(73.33%)	93	990593:990612	1061187:1061206
990593:990612	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYR76746.1|1008514_1009855_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYR76747.1|1009851_1010100_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYR76748.1|1010140_1010386_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYR76749.1|1010385_1011267_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYR76750.1|1011263_1012328_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYR76751.1|1012405_1013086_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYR76752.1|1013082_1013868_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYR76753.1|1013873_1014170_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYR76754.1|1014260_1014461_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYR76755.1|1014749_1015154_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYR76756.1|1015485_1015860_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYR76757.1|1015944_1016928_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYR76758.1|1016930_1017680_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYR76759.1|1017690_1018038_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYR76760.1|1018034_1018559_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYR76761.1|1018558_1019032_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYR76762.1|1019035_1019608_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYR76763.1|1019701_1019968_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYR76764.1|1020049_1020211_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR76765.1|1020643_1021141_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR76766.1|1021325_1021565_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYR76767.1|1021554_1021860_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYR76768.1|1021899_1022502_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYR76769.1|1022710_1023322_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYR76770.1|1023454_1024252_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYR76771.1|1024650_1024776_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR76772.1|1024911_1025361_-	lipoprotein	NA	NA	NA	NA	NA
AYR76773.1|1025577_1025967_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYR76774.1|1025953_1026235_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYR76775.1|1026234_1026849_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYR76776.1|1027067_1027322_+	hypothetical protein	NA	NA	NA	NA	NA
AYR76777.1|1027426_1027804_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYR76778.1|1027867_1028128_+	hypothetical protein	NA	NA	NA	NA	NA
AYR76779.1|1028217_1028970_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYR76780.1|1028935_1030339_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYR76781.1|1030338_1031808_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYR76782.1|1031899_1032430_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYR76783.1|1032444_1033677_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYR76784.1|1033681_1034179_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYR76785.1|1034190_1035132_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYR76786.1|1035173_1035542_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYR76787.1|1035507_1035915_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYR76788.1|1035911_1036466_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYR76789.1|1036452_1036842_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYR76790.1|1036816_1037380_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYR76791.1|1037383_1038529_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYR76792.1|1038540_1038981_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYR76793.1|1038984_1039437_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYR76794.1|1039614_1041567_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYR76795.1|1041566_1042217_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYR76796.1|1042220_1042523_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYR76797.1|1042525_1043557_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYR76798.1|1043553_1043889_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYR76799.1|1044083_1044815_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR76800.1|1044814_1045243_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR76801.1|1045301_1046057_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYR76802.1|1046144_1046282_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYR76803.1|1046297_1046651_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYR76804.1|1046651_1047851_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYR76805.1|1047847_1048528_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYR76806.1|1048527_1050039_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AYR76807.1|1050053_1050572_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYR76808.1|1051493_1052195_-	hypothetical protein	NA	NA	NA	NA	NA
AYR76809.1|1052507_1052786_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYR76810.1|1053211_1055824_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYR76811.1|1056031_1057042_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYR76812.1|1057204_1057750_+	hypothetical protein	NA	NA	NA	NA	NA
AYR76813.1|1057746_1058856_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYR76814.1|1058954_1061063_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYR76815.1|1061075_1062983_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1061187:1061206	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYR76816.1|1062997_1064251_+	inner membrane protein	NA	NA	NA	NA	NA
AYR76817.1|1064255_1065896_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYR76818.1|1065892_1066456_+	lipoprotein	NA	NA	NA	NA	NA
AYR76819.1|1066709_1066877_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYR76820.1|1066976_1067495_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYR76821.1|1067563_1069324_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYR76822.1|1069509_1069962_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYR76823.1|1070033_1071086_-	outer membrane protein A	NA	NA	NA	NA	NA
AYR76824.1|1071440_1071950_-	cell division inhibitor	NA	NA	NA	NA	NA
AYR76825.1|1072166_1072772_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYR76826.1|1072758_1074912_-	inner membrane protein	NA	NA	NA	NA	NA
AYR76827.1|1074930_1075377_-	hypothetical protein	NA	NA	NA	NA	NA
AYR76828.1|1075500_1077555_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYR76829.1|1077590_1078049_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYR76830.1|1078143_1078806_-	hypothetical protein	NA	NA	NA	NA	NA
AYR76831.1|1078976_1079393_+	hypothetical protein	NA	NA	NA	NA	NA
AYR76832.1|1079437_1079755_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYR76833.1|1079812_1081024_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYR76834.1|1082155_1082614_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR76835.1|1083350_1083632_+	acylphosphatase	NA	NA	NA	NA	NA
AYR76836.1|1083628_1083958_-	sulfite reductase	NA	NA	NA	NA	NA
AYR76837.1|1084044_1084704_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYR76838.1|1085367_1085826_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	1528644	1602242	4782252	protease,transposase,tRNA,tail,plate,head	Burkholderia_virus(44.12%)	72	NA	NA
AYR77237.1|1528644_1529103_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR77238.1|1529605_1529887_+	stress response protein	NA	NA	NA	NA	NA
AYR77239.1|1530155_1530977_+|protease	serine protease	protease	NA	NA	NA	NA
AYR77240.1|1531011_1531341_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYR77241.1|1531327_1531690_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYR77242.1|1531801_1531972_-	hypothetical protein	NA	NA	NA	NA	NA
AYR77243.1|1532106_1533141_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77244.1|1533315_1534704_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYR77245.1|1534714_1536244_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYR77246.1|1536770_1537715_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77247.1|1537896_1538286_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYR77248.1|1538257_1538710_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYR77249.1|1538904_1539135_-	hypothetical protein	NA	NA	NA	NA	NA
AYR77250.1|1539131_1539815_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYR77251.1|1540399_1540702_-	hypothetical protein	NA	NA	NA	NA	NA
AYR77252.1|1541272_1541803_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYR77253.1|1542102_1543269_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYR77254.1|1543279_1545049_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYR77255.1|1546493_1546844_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYR77256.1|1547558_1548209_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYR77257.1|1548531_1548843_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYR77258.1|1548842_1549388_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYR77259.1|1549384_1550980_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYR77260.1|1550979_1552476_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYR77261.1|1552456_1553278_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYR77262.1|1553280_1553739_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYR77263.1|1553953_1555069_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYR77264.1|1555083_1556037_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYR77265.1|1556046_1556385_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77266.1|1556386_1556833_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYR77267.1|1556832_1557297_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYR77268.1|1557537_1558965_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYR77269.1|1558964_1559486_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYR77270.1|1559488_1559770_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77271.1|1559867_1560203_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77272.1|1560378_1562844_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYR77273.1|1562843_1563728_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYR77274.1|1563724_1563940_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYR77275.1|1563927_1565082_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYR77276.1|1565078_1565606_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYR77277.1|1565662_1566010_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYR77278.1|1566000_1567104_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYR77279.1|1567096_1567675_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYR77280.1|1567677_1568703_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYR77281.1|1569216_1569834_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYR77282.1|1571344_1571917_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYR77283.1|1572197_1573580_+	amino acid permease	NA	NA	NA	NA	NA
AYR77284.1|1573641_1573977_-	hypothetical protein	NA	NA	NA	NA	NA
AYR77285.1|1574103_1574835_+	two-component response regulator	NA	NA	NA	NA	NA
AYR77286.1|1575315_1576467_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYR77287.1|1576619_1578326_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYR77288.1|1578433_1579738_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYR77289.1|1579813_1580743_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYR77290.1|1580739_1582143_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYR77291.1|1582310_1583957_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYR77292.1|1584156_1585332_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYR77293.1|1585434_1586943_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77294.1|1587648_1588650_+	adenosine deaminase	NA	NA	NA	NA	NA
AYR77295.1|1588723_1589839_-	oxidoreductase	NA	NA	NA	NA	NA
AYR77296.1|1589941_1590097_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77297.1|1590395_1590611_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYR77298.1|1590699_1591140_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77299.1|1591216_1591798_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYR77300.1|1591797_1592376_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYR77301.1|1592368_1594390_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYR77302.1|1594390_1595449_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYR77303.1|1595452_1596073_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYR77304.1|1596075_1596768_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYR77305.1|1596767_1597403_+	endonuclease III	NA	NA	NA	NA	NA
AYR77306.1|1598003_1599509_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYR77307.1|1599613_1600219_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYR77308.1|1600967_1602242_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	1783279	1787691	4782252		Escherichia_phage(50.0%)	6	NA	NA
AYR77492.1|1783279_1783519_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
AYR77493.1|1784391_1785201_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYR77494.1|1785273_1785651_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYR77495.1|1785798_1786341_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYR77496.1|1786532_1787261_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYR77497.1|1787277_1787691_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	1991544	1998778	4782252		Morganella_phage(33.33%)	7	NA	NA
AYR77687.1|1991544_1992975_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AYR77688.1|1993048_1993744_-	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AYR77689.1|1993823_1994135_-	hypothetical protein	NA	NA	NA	NA	NA
AYR77690.1|1994785_1995970_+	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AYR77691.1|1996429_1996642_-	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AYR77692.1|1997087_1998356_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AYR77693.1|1998358_1998778_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	2105078	2115585	4782252		Enterobacteria_phage(37.5%)	10	NA	NA
AYR77790.1|2105078_2106392_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYR77791.1|2106418_2107498_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYR77792.1|2107502_2108276_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYR77793.1|2108291_2109266_-	reductase RfbI	NA	NA	NA	NA	NA
AYR77794.1|2109271_2109823_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYR77795.1|2109823_2110702_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYR77796.1|2110749_2111649_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYR77797.1|2111648_2112734_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYR77798.1|2113110_2114004_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYR77799.1|2114181_2115585_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 7
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	2191476	2200647	4782252	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYR77858.1|2191476_2193510_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYR77859.1|2193750_2194209_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYR77860.1|2194380_2194911_+	lipoprotein	NA	NA	NA	NA	NA
AYR77861.1|2194967_2195435_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYR77862.1|2195481_2196201_-	two-component system response regulator	NA	NA	NA	NA	NA
AYR77863.1|2196197_2197883_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYR77864.1|2198105_2198837_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYR77865.1|2198896_2199004_+	hypothetical protein	NA	NA	NA	NA	NA
AYR77866.1|2198984_2199716_-	ABC transporter permease	NA	NA	NA	NA	NA
AYR77867.1|2199699_2200647_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 8
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	2735974	2749366	4782252	tail	Salmonella_phage(70.0%)	11	NA	NA
AYR78296.1|2735974_2736193_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYR78297.1|2736283_2737384_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYR78298.1|2737380_2737866_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYR78299.1|2737862_2740940_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYR78300.1|2740932_2741052_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYR78301.1|2741066_2741369_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYR78302.1|2741423_2741939_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYR78303.1|2741948_2743121_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYR78304.1|2743263_2743836_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYR78305.1|2744513_2745629_+	glycosyltransferase	NA	NA	NA	NA	NA
AYR78306.1|2745709_2749366_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 9
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	3066527	3110230	4782252	bacteriocin,protease,transposase,tRNA	Bacillus_virus(33.33%)	44	NA	NA
AYR78593.1|3066527_3066986_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR78594.1|3067175_3068255_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYR78595.1|3068356_3069520_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYR78596.1|3069541_3070588_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYR78597.1|3070961_3071387_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78598.1|3071412_3071991_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78599.1|3072024_3072699_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78600.1|3072680_3073364_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYR78601.1|3073357_3074014_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYR78602.1|3074118_3074577_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR78603.1|3074765_3076757_-	transketolase	NA	NA	NA	NA	NA
AYR78604.1|3077032_3077791_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYR78605.1|3077891_3078812_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYR78606.1|3079039_3081016_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYR78607.1|3081024_3081156_-	hypothetical protein	NA	NA	NA	NA	NA
AYR78608.1|3081450_3081750_-	membrane protein	NA	NA	NA	NA	NA
AYR78609.1|3081805_3082960_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYR78610.1|3083452_3084847_+	galactose-proton symport	NA	NA	NA	NA	NA
AYR78611.1|3084925_3085423_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78612.1|3085518_3086226_+	endonuclease I	NA	NA	NA	NA	NA
AYR78613.1|3086302_3087034_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYR78614.1|3087053_3088001_+	glutathione synthetase	NA	NA	NA	NA	NA
AYR78615.1|3088216_3088780_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78616.1|3088779_3089196_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYR78617.1|3089242_3089929_-	global regulatory protein	NA	NA	NA	NA	NA
AYR78618.1|3090058_3091039_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYR78619.1|3091056_3091761_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78620.1|3091779_3092346_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78621.1|3092342_3092633_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78622.1|3092640_3093234_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYR78623.1|3093226_3094363_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYR78624.1|3094453_3095461_-	hypothetical protein	NA	NA	NA	NA	NA
AYR78625.1|3095593_3096640_-	L-asparaginase	NA	NA	NA	NA	NA
AYR78626.1|3096958_3097417_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR78627.1|3097539_3098259_-	hypothetical protein	NA	NA	NA	NA	NA
AYR78628.1|3098308_3098635_-	hypothetical protein	NA	NA	NA	NA	NA
AYR78629.1|3098634_3099354_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYR78630.1|3099508_3100561_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYR78631.1|3100588_3100864_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYR78632.1|3100976_3102062_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYR78633.1|3102278_3103535_+	nucleoside permease	NA	NA	NA	NA	NA
AYR78634.1|3106145_3106853_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78635.1|3109442_3109709_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYR78636.1|3109951_3110230_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 10
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	3488325	3526383	4782252	portal,transposase,integrase,terminase,plate,capsid,tail	Salmonella_phage(82.05%)	46	3483289:3483303	3495455:3495469
3483289:3483303	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYR78965.1|3488325_3489972_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYR78966.1|3490111_3490210_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYR78967.1|3490465_3490795_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78968.1|3490835_3491888_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYR78969.1|3492283_3492853_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYR78970.1|3492978_3493200_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78971.1|3493232_3493742_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYR78972.1|3493916_3494141_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78973.1|3494163_3494505_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYR78974.1|3494572_3494806_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYR78975.1|3494805_3495033_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYR78976.1|3495029_3495887_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3495455:3495469	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYR78977.1|3495883_3498298_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYR78978.1|3498451_3498640_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYR78979.1|3500607_3501522_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78980.1|3501518_3502259_+	hypothetical protein	NA	NA	NA	NA	NA
AYR78981.1|3502293_3503331_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYR78982.1|3503330_3505097_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYR78983.1|3505239_3506073_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYR78984.1|3506089_3507148_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYR78985.1|3507151_3507802_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYR78986.1|3507834_3508362_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYR78987.1|3508361_3508565_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYR78988.1|3508568_3508784_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYR78989.1|3508803_3509277_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYR78990.1|3509278_3509656_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYR78991.1|3509652_3510081_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYR78992.1|3510176_3510608_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYR78993.1|3510600_3511047_+|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYR78994.1|3511115_3511694_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYR78995.1|3511690_3512050_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYR78996.1|3512036_3512945_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYR78997.1|3512937_3513543_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYR78998.1|3513539_3515054_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYR78999.1|3515053_3515647_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYR79000.1|3515618_3516059_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYR79001.1|3516481_3517054_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYR79002.1|3517196_3518369_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYR79003.1|3518378_3518894_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYR79004.1|3518948_3519251_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYR79005.1|3519265_3519385_+	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYR79006.1|3519377_3522455_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYR79007.1|3522451_3522937_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYR79008.1|3522933_3524034_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYR79009.1|3524124_3524343_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYR79010.1|3525924_3526383_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 11
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	4441917	4516174	4782252	portal,tail,integrase,terminase,capsid,plate	Salmonella_phage(82.98%)	76	4503418:4503434	4516333:4516349
AYR79781.1|4441917_4443867_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYR79782.1|4443938_4444847_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79783.1|4444920_4445820_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79784.1|4445861_4446221_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79785.1|4446320_4446590_-	hypothetical protein	NA	NA	NA	NA	NA
AYR79786.1|4446721_4447996_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYR79787.1|4448215_4448593_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79788.1|4448679_4448898_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYR79789.1|4448965_4450066_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYR79790.1|4450062_4450548_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYR79791.1|4450547_4453328_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYR79792.1|4453320_4453440_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYR79793.1|4453454_4453757_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYR79794.1|4453811_4454327_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYR79795.1|4454336_4455509_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYR79796.1|4456043_4456766_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYR79797.1|4456963_4457371_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYR79798.1|4457377_4458997_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYR79799.1|4458993_4459599_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYR79800.1|4459591_4460500_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AYR79801.1|4460486_4460846_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYR79802.1|4460842_4461421_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYR79803.1|4461489_4461936_-|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYR79804.1|4461928_4462360_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AYR79805.1|4462455_4462881_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYR79806.1|4462880_4463258_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYR79807.1|4463262_4463733_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYR79808.1|4463752_4463968_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYR79809.1|4463971_4464175_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYR79810.1|4464174_4464639_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYR79811.1|4464732_4465383_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYR79812.1|4465386_4466451_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYR79813.1|4466467_4467301_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYR79814.1|4467443_4469210_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYR79815.1|4469206_4470253_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYR79816.1|4470301_4470997_-	hypothetical protein	NA	NA	NA	NA	NA
AYR79817.1|4471016_4472081_-	hypothetical protein	NA	NA	NA	NA	NA
AYR79818.1|4472077_4473142_-	hypothetical protein	NA	NA	NA	NA	NA
AYR79819.1|4474066_4474396_-	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	90.8	6.2e-50
AYR79820.1|4474392_4476462_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.9	0.0e+00
AYR79821.1|4476452_4477313_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYR79822.1|4477309_4477894_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYR79823.1|4477890_4478118_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYR79824.1|4478117_4478351_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYR79825.1|4478418_4478760_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYR79826.1|4478723_4478924_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYR79827.1|4478931_4479441_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYR79828.1|4479473_4479716_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYR79829.1|4479832_4480465_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYR79830.1|4480468_4481494_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYR79831.1|4481600_4481954_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYR79832.1|4482570_4482858_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79833.1|4482868_4483759_+	methyltransferase	NA	NA	NA	NA	NA
AYR79834.1|4483758_4484505_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79835.1|4484806_4486777_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYR79836.1|4486796_4488101_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYR79837.1|4488123_4488819_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYR79838.1|4488844_4489639_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYR79839.1|4489648_4490716_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYR79840.1|4490760_4492497_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYR79841.1|4492496_4494992_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYR79842.1|4495015_4496062_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYR79843.1|4496064_4497342_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYR79844.1|4497586_4498126_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYR79845.1|4498979_4500491_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYR79846.1|4500474_4502064_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79847.1|4502227_4503241_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4503418:4503434	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYR79848.1|4503667_4503961_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79849.1|4503957_4504446_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79850.1|4504625_4505078_-	hypothetical protein	NA	NA	NA	NA	NA
AYR79851.1|4510300_4510762_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79852.1|4510758_4510980_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYR79853.1|4511836_4512619_+	hypothetical protein	NA	NA	NA	NA	NA
AYR79854.1|4513245_4513470_-	hypothetical protein	NA	NA	NA	NA	NA
AYR79855.1|4513599_4514604_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYR79856.1|4514914_4516174_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4516333:4516349	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 12
CP029952	Salmonella enterica subsp. enterica serovar Typhi strain 311189_209186 chromosome, complete genome	4782252	4658426	4668685	4782252	capsid	Enterobacteria_phage(77.78%)	13	NA	NA
AYR79993.1|4658426_4659503_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYR79994.1|4659499_4660573_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYR79995.1|4660547_4661711_-	hypothetical protein	NA	NA	NA	NA	NA
AYR79996.1|4661986_4662553_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYR79997.1|4662568_4662808_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYR79998.1|4662811_4663672_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYR79999.1|4664094_4664418_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYR80000.1|4664401_4664902_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
AYR80001.1|4664898_4665126_+	hypothetical protein	NA	NA	NA	NA	NA
AYR80002.1|4665122_4665443_+	P4 phage protein	NA	NA	NA	NA	NA
AYR80003.1|4665457_4666132_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	75.1	1.4e-85
AYR80004.1|4666128_4667790_+	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	90.2	1.9e-296
AYR80005.1|4668526_4668685_+	recombinase	NA	Q7M297	Enterobacteria_phage	57.4	3.9e-10
