assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003718735.1_ASM371873v1	CP033460	Staphylococcus sp. SDB 2975 chromosome, complete genome	1	719418-719667	1,1	PILER-CR,CRISPRCasFinder	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6	cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	Type III-B,Type III-A,Type III-D,Type III-C	TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC,TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC	37,37	0	0	NA	NA	NA:NA	3,3	3	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	NA|74aa|up_5|CP033460.1_714721_714943_+,NA	NA|412aa|up_9|CP033460.1_709987_711223_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|477aa|up_8|CP033460.1_711490_712921_+	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|224aa|up_7|CP033460.1_713250_713922_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|151aa|up_6|CP033460.1_713971_714424_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|74aa|up_5|CP033460.1_714721_714943_+	NA	NA|352aa|up_4|CP033460.1_715166_716222_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|256aa|up_3|CP033460.1_716218_716986_-	PRK00208, thiG, thiazole synthase; Reviewed	NA|67aa|up_2|CP033460.1_716987_717188_-	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS	NA|376aa|up_1|CP033460.1_717171_718299_-	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|191aa|up_0|CP033460.1_718301_718874_-	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	cas1|303aa|down_0|CP033460.1_719843_720752_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|101aa|down_1|CP033460.1_720751_721054_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|757aa|down_2|CP033460.1_721127_723398_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|141aa|down_3|CP033460.1_723403_723826_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|down_4|CP033460.1_723827_724472_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm5gr7|370aa|down_5|CP033460.1_725399_726509_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|422aa|down_6|CP033460.1_726533_727799_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|234aa|down_7|CP033460.1_727825_728527_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|282aa|down_8|CP033460.1_729273_730119_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|124aa|down_9|CP033460.1_730343_730715_-	pfam02261, Asp_decarbox, Aspartate decarboxylase
GCA_003718735.1_ASM371873v1	CP033460	Staphylococcus sp. SDB 2975 chromosome, complete genome	2	728648-729119	2,2,1	CRISPRCasFinder,PILER-CR,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6	cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	Type III-B,Type III-A,Type III-D,Type III-C	TATCTAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACG,TCAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACG,AATCGATGAGTACCCCGAGCATGAGGGGACGAGAA	42,39,35	0	0	NA	NA	NA:NA:NA	5,2,6	6	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	NA,NA|237aa|down_8|CP033460.1_737766_738477_+	NA|376aa|up_9|CP033460.1_717171_718299_-	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|191aa|up_8|CP033460.1_718301_718874_-	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	cas1|303aa|up_7|CP033460.1_719843_720752_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|101aa|up_6|CP033460.1_720751_721054_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|757aa|up_5|CP033460.1_721127_723398_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|141aa|up_4|CP033460.1_723403_723826_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|up_3|CP033460.1_723827_724472_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm5gr7|370aa|up_2|CP033460.1_725399_726509_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|422aa|up_1|CP033460.1_726533_727799_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|234aa|up_0|CP033460.1_727825_728527_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|282aa|down_0|CP033460.1_729273_730119_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|124aa|down_1|CP033460.1_730343_730715_-	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|287aa|down_2|CP033460.1_730719_731580_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|266aa|down_3|CP033460.1_731579_732377_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|294aa|down_4|CP033460.1_732444_733326_+	PRK12921, PRK12921, oxidoreductase	NA|163aa|down_5|CP033460.1_733557_734046_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|386aa|down_6|CP033460.1_734387_735545_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|603aa|down_7|CP033460.1_735873_737682_+	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|237aa|down_8|CP033460.1_737766_738477_+	NA	NA|312aa|down_9|CP033460.1_738534_739470_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs
GCA_003718735.1_ASM371873v1	CP033460	Staphylococcus sp. SDB 2975 chromosome, complete genome	3	824623-824730	3	CRISPRCasFinder	no		cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	Orphan	ATTTTCTATTCAGATAGCTACTGCCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	NA,NA	NA|309aa|up_9|CP033460.1_814928_815855_-	PRK13906, murB, UDP-N-acetylmuramate dehydrogenase	NA|175aa|up_8|CP033460.1_815933_816458_-	pfam04229, GrpB, GrpB protein	NA|301aa|up_7|CP033460.1_816563_817466_+	NF033194, lipo_EMYY, EMYY motif lipoprotein	NA|107aa|up_6|CP033460.1_817596_817917_+	TIGR04019, hypothetical_protein, bacillithiol system protein YtxJ	NA|377aa|up_5|CP033460.1_818145_819276_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|411aa|up_4|CP033460.1_819344_820577_-	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|166aa|up_3|CP033460.1_820590_821088_-	COG3610, COG3610, Uncharacterized conserved protein [Function unknown]	NA|237aa|up_2|CP033460.1_821106_821817_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|356aa|up_1|CP033460.1_822057_823125_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|351aa|up_0|CP033460.1_823403_824456_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|down_0|CP033460.1_824812_825454_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|295aa|down_1|CP033460.1_825605_826490_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|434aa|down_2|CP033460.1_826574_827876_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|234aa|down_3|CP033460.1_827868_828570_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|188aa|down_4|CP033460.1_828638_829202_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|843aa|down_5|CP033460.1_829533_832062_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|372aa|down_6|CP033460.1_832236_833353_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|329aa|down_7|CP033460.1_833664_834651_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|214aa|down_8|CP033460.1_834861_835503_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|82aa|down_9|CP033460.1_835509_835755_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003718735.1_ASM371873v1	CP033460	Staphylococcus sp. SDB 2975 chromosome, complete genome	4	1209198-1209293	4	CRISPRCasFinder	no		cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	Orphan	ATTGTTTCTTCTAATTCATTCTAATTAATAT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	NA|85aa|up_9|CP033460.1_1200543_1200798_-,NA|165aa|up_8|CP033460.1_1200912_1201407_-,NA|185aa|up_7|CP033460.1_1201591_1202146_+,NA|206aa|up_6|CP033460.1_1203287_1203905_+,NA|62aa|up_5|CP033460.1_1203901_1204087_-,NA|106aa|up_2|CP033460.1_1206782_1207100_-,NA|178aa|up_1|CP033460.1_1207096_1207630_-,NA|153aa|down_0|CP033460.1_1209884_1210343_-,NA|207aa|down_1|CP033460.1_1210355_1210976_-,NA|123aa|down_2|CP033460.1_1210968_1211337_-,NA|111aa|down_3|CP033460.1_1211711_1212044_-,NA|66aa|down_4|CP033460.1_1212356_1212554_-,NA|120aa|down_8|CP033460.1_1215829_1216189_-,NA|68aa|down_9|CP033460.1_1216191_1216395_-	NA|85aa|up_9|CP033460.1_1200543_1200798_-	NA	NA|165aa|up_8|CP033460.1_1200912_1201407_-	NA	NA|185aa|up_7|CP033460.1_1201591_1202146_+	NA	NA|206aa|up_6|CP033460.1_1203287_1203905_+	NA	NA|62aa|up_5|CP033460.1_1203901_1204087_-	NA	NA|146aa|up_4|CP033460.1_1205542_1205980_+	pfam11300, DUF3102, Protein of unknown function (DUF3102)	NA|109aa|up_3|CP033460.1_1206459_1206786_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|106aa|up_2|CP033460.1_1206782_1207100_-	NA	NA|178aa|up_1|CP033460.1_1207096_1207630_-	NA	NA|158aa|up_0|CP033460.1_1207690_1208164_-	pfam05119, Terminase_4, Phage terminase, small subunit	NA|153aa|down_0|CP033460.1_1209884_1210343_-	NA	NA|207aa|down_1|CP033460.1_1210355_1210976_-	NA	NA|123aa|down_2|CP033460.1_1210968_1211337_-	NA	NA|111aa|down_3|CP033460.1_1211711_1212044_-	NA	NA|66aa|down_4|CP033460.1_1212356_1212554_-	NA	NA|555aa|down_5|CP033460.1_1212822_1214487_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|286aa|down_6|CP033460.1_1214491_1215349_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|100aa|down_7|CP033460.1_1215435_1215735_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|120aa|down_8|CP033460.1_1215829_1216189_-	NA	NA|68aa|down_9|CP033460.1_1216191_1216395_-	NA
GCA_003718735.1_ASM371873v1	CP033460	Staphylococcus sp. SDB 2975 chromosome, complete genome	5	1502635-1502727	5	CRISPRCasFinder	no		cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	Orphan	CTATTCTAGTTAGCTTTGCCGGG	23	1	3	1502658-1502704|1502658-1502704|1502658-1502704	CP033460.1_70073-70119|CP033460.1_824579-824533|CP033460.1_2096110-2096064	NA	1	1	Orphan	cas3,csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,DEDDh,DinG	NA,NA	NA|496aa|up_9|CP033460.1_1490816_1492304_-	cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|115aa|up_8|CP033460.1_1492469_1492814_-	pfam09843, DUF2070, Predicted membrane protein (DUF2070)	NA|605aa|up_7|CP033460.1_1492978_1494793_+	cd09609, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|216aa|up_6|CP033460.1_1494841_1495489_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|288aa|up_5|CP033460.1_1495488_1496352_-	PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional	NA|310aa|up_4|CP033460.1_1496403_1497333_-	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|309aa|up_3|CP033460.1_1497334_1498261_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|312aa|up_2|CP033460.1_1498432_1499368_-	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|303aa|up_1|CP033460.1_1499835_1500744_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|534aa|up_0|CP033460.1_1500925_1502527_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|401aa|down_0|CP033460.1_1503261_1504464_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|330aa|down_1|CP033460.1_1504546_1505536_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|295aa|down_2|CP033460.1_1505538_1506423_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|243aa|down_3|CP033460.1_1506422_1507151_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|240aa|down_4|CP033460.1_1507172_1507892_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|388aa|down_5|CP033460.1_1508002_1509166_+	COG1473, AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]	NA|359aa|down_6|CP033460.1_1509162_1510239_+	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_7|CP033460.1_1510240_1511503_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|67aa|down_8|CP033460.1_1511774_1511975_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|103aa|down_9|CP033460.1_1512327_1512636_-	COG4699, COG4699, Uncharacterized protein conserved in bacteria [Function unknown]
