The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	930097	937409	4807245	integrase,protease	Dickeya_phage(16.67%)	6	931348:931362	942527:942541
AYT98436.1|930097_931216_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYT98437.1|931212_933159_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
931348:931362	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYT98438.1|933288_933510_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYT98439.1|933833_934154_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYT98440.1|934184_936461_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYT98441.1|937031_937409_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
942527:942541	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	1008322	1085634	4807245	integrase,terminase,transposase,protease,tail	Salmonella_phage(73.33%)	93	990388:990407	1060995:1061014
990388:990407	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT98491.1|1008322_1009663_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYT98492.1|1009659_1009908_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYT98493.1|1009948_1010194_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYT98494.1|1010193_1011075_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYT98495.1|1011071_1012136_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYT98496.1|1012213_1012894_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYT98497.1|1012890_1013676_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYT98498.1|1013681_1013978_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYT98499.1|1014068_1014269_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYT98500.1|1014557_1014962_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYT98501.1|1015293_1015668_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYT98502.1|1015752_1016736_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYT98503.1|1016738_1017488_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYT98504.1|1017498_1017846_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYT98505.1|1017842_1018367_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYT98506.1|1018366_1018840_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYT98507.1|1018843_1019416_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYT98508.1|1019509_1019776_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYT98509.1|1019857_1020019_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT98510.1|1020451_1020949_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT98511.1|1021133_1021373_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYT98512.1|1021362_1021668_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYT98513.1|1021707_1022310_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYT98514.1|1022518_1023130_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYT98515.1|1023262_1024060_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYT98516.1|1024458_1024584_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT98517.1|1024719_1025169_-	lipoprotein	NA	NA	NA	NA	NA
AYT98518.1|1025385_1025775_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYT98519.1|1025761_1026043_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYT98520.1|1026042_1026657_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYT98521.1|1026875_1027130_+	hypothetical protein	NA	NA	NA	NA	NA
AYT98522.1|1027234_1027612_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYT98523.1|1027675_1027936_+	hypothetical protein	NA	NA	NA	NA	NA
AYT98524.1|1028025_1028778_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYT98525.1|1028743_1030147_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYT98526.1|1030146_1031616_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYT98527.1|1031707_1032238_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYT98528.1|1032252_1033485_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYT98529.1|1033489_1033987_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYT98530.1|1033998_1034940_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYT98531.1|1034981_1035350_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYT98532.1|1035315_1035723_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYT98533.1|1035719_1036274_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYT98534.1|1036260_1036650_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYT98535.1|1036624_1037188_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYT98536.1|1037191_1038337_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYT98537.1|1038348_1038789_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYT98538.1|1038792_1039245_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYT98539.1|1039422_1041375_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYT98540.1|1041374_1042025_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYT98541.1|1042028_1042331_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYT98542.1|1042333_1043365_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYT98543.1|1043361_1043697_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYT98544.1|1043891_1044623_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT98545.1|1044622_1045051_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT98546.1|1045109_1045865_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYT98547.1|1045952_1046090_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYT98548.1|1046105_1046459_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYT98549.1|1046459_1047659_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYT98550.1|1047655_1048336_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYT98551.1|1048335_1049847_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AYT98552.1|1049861_1050380_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYT98553.1|1051301_1052003_-	hypothetical protein	NA	NA	NA	NA	NA
AYT98554.1|1052315_1052594_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYT98555.1|1053019_1055632_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYT98556.1|1055839_1056850_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYT98557.1|1057012_1057558_+	hypothetical protein	NA	NA	NA	NA	NA
AYT98558.1|1057554_1058664_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYT98559.1|1058762_1060871_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYT98560.1|1060883_1062791_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1060995:1061014	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT98561.1|1062805_1064059_+	inner membrane protein	NA	NA	NA	NA	NA
AYT98562.1|1064063_1065704_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYT98563.1|1065700_1066264_+	lipoprotein	NA	NA	NA	NA	NA
AYT98564.1|1066517_1066685_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYT98565.1|1066784_1067303_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYT98566.1|1067371_1069132_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYT98567.1|1069317_1069770_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYT98568.1|1069841_1070894_-	outer membrane protein A	NA	NA	NA	NA	NA
AYT98569.1|1071248_1071758_-	cell division inhibitor	NA	NA	NA	NA	NA
AYT98570.1|1071974_1072580_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYT98571.1|1072566_1074720_-	inner membrane protein	NA	NA	NA	NA	NA
AYT98572.1|1074738_1075185_-	hypothetical protein	NA	NA	NA	NA	NA
AYT98573.1|1075308_1077363_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYT98574.1|1077398_1077857_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYT98575.1|1077951_1078614_-	hypothetical protein	NA	NA	NA	NA	NA
AYT98576.1|1078784_1079201_+	hypothetical protein	NA	NA	NA	NA	NA
AYT98577.1|1079245_1079563_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYT98578.1|1079620_1080832_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYT98579.1|1081963_1082422_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT98580.1|1083158_1083440_+	acylphosphatase	NA	NA	NA	NA	NA
AYT98581.1|1083436_1083766_-	sulfite reductase	NA	NA	NA	NA	NA
AYT98582.1|1083852_1084512_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYT98583.1|1085175_1085634_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	1528452	1602050	4807245	tRNA,transposase,head,protease,plate,tail	Burkholderia_virus(44.12%)	72	NA	NA
AYT98982.1|1528452_1528911_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT98983.1|1529413_1529695_+	stress response protein	NA	NA	NA	NA	NA
AYT98984.1|1529963_1530785_+|protease	serine protease	protease	NA	NA	NA	NA
AYT98985.1|1530819_1531149_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYT98986.1|1531135_1531498_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYT98987.1|1531609_1531780_-	hypothetical protein	NA	NA	NA	NA	NA
AYT98988.1|1531914_1532949_+	hypothetical protein	NA	NA	NA	NA	NA
AYT98989.1|1533123_1534512_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYT98990.1|1534522_1536052_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYT98991.1|1536578_1537523_+	hypothetical protein	NA	NA	NA	NA	NA
AYT98992.1|1537704_1538094_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYT98993.1|1538065_1538518_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYT98994.1|1538712_1538943_-	hypothetical protein	NA	NA	NA	NA	NA
AYT98995.1|1538939_1539623_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYT98996.1|1540207_1540510_-	hypothetical protein	NA	NA	NA	NA	NA
AYT98997.1|1541080_1541611_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYT98998.1|1541910_1543077_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYT98999.1|1543087_1544857_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYT99000.1|1546301_1546652_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYT99001.1|1547366_1548017_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYT99002.1|1548339_1548651_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYT99003.1|1548650_1549196_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYT99004.1|1549192_1550788_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYT99005.1|1550787_1552284_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYT99006.1|1552264_1553086_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYT99007.1|1553088_1553547_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYT99008.1|1553761_1554877_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYT99009.1|1554891_1555845_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYT99010.1|1555854_1556193_+	hypothetical protein	NA	NA	NA	NA	NA
AYT99011.1|1556194_1556641_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYT99012.1|1556640_1557105_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYT99013.1|1557345_1558773_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYT99014.1|1558772_1559294_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYT99015.1|1559296_1559578_+	hypothetical protein	NA	NA	NA	NA	NA
AYT99016.1|1559675_1560011_+	hypothetical protein	NA	NA	NA	NA	NA
AYT99017.1|1560186_1562652_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYT99018.1|1562651_1563536_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYT99019.1|1563532_1563748_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYT99020.1|1563735_1564890_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYT99021.1|1564886_1565414_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYT99022.1|1565470_1565818_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYT99023.1|1565808_1566912_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYT99024.1|1566904_1567483_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYT99025.1|1567485_1568511_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYT99026.1|1569024_1569642_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYT99027.1|1571152_1571725_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYT99028.1|1572005_1573388_+	amino acid permease	NA	NA	NA	NA	NA
AYT99029.1|1573449_1573785_-	hypothetical protein	NA	NA	NA	NA	NA
AYT99030.1|1573911_1574643_+	two-component response regulator	NA	NA	NA	NA	NA
AYT99031.1|1575123_1576275_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYT99032.1|1576427_1578134_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYT99033.1|1578241_1579546_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYT99034.1|1579621_1580551_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYT99035.1|1580547_1581951_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYT99036.1|1582118_1583765_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYT99037.1|1583964_1585140_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYT99038.1|1585242_1586751_+	hypothetical protein	NA	NA	NA	NA	NA
AYT99039.1|1587456_1588458_+	adenosine deaminase	NA	NA	NA	NA	NA
AYT99040.1|1588531_1589647_-	oxidoreductase	NA	NA	NA	NA	NA
AYT99041.1|1589749_1589905_+	hypothetical protein	NA	NA	NA	NA	NA
AYT99042.1|1590203_1590419_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYT99043.1|1590507_1590948_+	hypothetical protein	NA	NA	NA	NA	NA
AYT99044.1|1591024_1591606_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYT99045.1|1591605_1592184_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYT99046.1|1592176_1594198_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYT99047.1|1594198_1595257_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYT99048.1|1595260_1595881_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYT99049.1|1595883_1596576_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYT99050.1|1596575_1597211_+	endonuclease III	NA	NA	NA	NA	NA
AYT99051.1|1597811_1599317_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYT99052.1|1599421_1600027_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYT99053.1|1600775_1602050_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	1783087	1787499	4807245		Escherichia_phage(50.0%)	6	NA	NA
AYT99237.1|1783087_1783327_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
AYT99238.1|1784199_1785009_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYT99239.1|1785081_1785459_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYT99240.1|1785606_1786149_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYT99241.1|1786340_1787069_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYT99242.1|1787085_1787499_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	1991353	1998587	4807245		Morganella_phage(33.33%)	7	NA	NA
AYT99433.1|1991353_1992784_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AYT99434.1|1992857_1993553_-	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AYT99435.1|1993632_1993944_-	hypothetical protein	NA	NA	NA	NA	NA
AYT99436.1|1994594_1995779_+	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AYT99437.1|1996238_1996451_-	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AYT99438.1|1996896_1998165_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AYT99439.1|1998167_1998587_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	2104887	2115394	4807245		Enterobacteria_phage(37.5%)	10	NA	NA
AYT99536.1|2104887_2106201_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYT99537.1|2106227_2107307_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYT99538.1|2107311_2108085_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYT99539.1|2108100_2109075_-	reductase RfbI	NA	NA	NA	NA	NA
AYT99540.1|2109080_2109632_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYT99541.1|2109632_2110511_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYT99542.1|2110558_2111458_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYT99543.1|2111457_2112543_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYT99544.1|2112919_2113813_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYT99545.1|2113990_2115394_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 7
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	2191285	2200456	4807245	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYT99604.1|2191285_2193319_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYT99605.1|2193559_2194018_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYT99606.1|2194189_2194720_+	lipoprotein	NA	NA	NA	NA	NA
AYT99607.1|2194776_2195244_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYT99608.1|2195290_2196010_-	two-component system response regulator	NA	NA	NA	NA	NA
AYT99609.1|2196006_2197692_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYT99610.1|2197914_2198646_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYT99611.1|2198705_2198813_+	hypothetical protein	NA	NA	NA	NA	NA
AYT99612.1|2198793_2199525_-	ABC transporter permease	NA	NA	NA	NA	NA
AYT99613.1|2199508_2200456_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 8
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	2735892	2749284	4807245	tail	Salmonella_phage(70.0%)	11	NA	NA
AYU00043.1|2735892_2736111_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYU00044.1|2736201_2737302_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYU00045.1|2737298_2737784_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYU00046.1|2737780_2740858_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYU00047.1|2740850_2740970_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYU00048.1|2740984_2741287_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYU00049.1|2741341_2741857_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYU00050.1|2741866_2743039_-|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYU00051.1|2743181_2743754_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYU00052.1|2744431_2745547_+	glycosyltransferase	NA	NA	NA	NA	NA
AYU00053.1|2745627_2749284_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 9
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	3066032	3109735	4807245	tRNA,protease,bacteriocin,transposase	Bacillus_virus(33.33%)	44	NA	NA
AYU00340.1|3066032_3066491_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU00341.1|3066680_3067760_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYU00342.1|3067861_3069025_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYU00343.1|3069046_3070093_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYU00344.1|3070466_3070892_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00345.1|3070917_3071496_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00346.1|3071529_3072204_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00347.1|3072185_3072869_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYU00348.1|3072862_3073519_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYU00349.1|3073623_3074082_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU00350.1|3074270_3076262_-	transketolase	NA	NA	NA	NA	NA
AYU00351.1|3076537_3077296_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYU00352.1|3077396_3078317_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYU00353.1|3078544_3080521_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYU00354.1|3080529_3080661_-	hypothetical protein	NA	NA	NA	NA	NA
AYU00355.1|3080955_3081255_-	membrane protein	NA	NA	NA	NA	NA
AYU00356.1|3081310_3082465_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYU00357.1|3082957_3084352_+	galactose-proton symport	NA	NA	NA	NA	NA
AYU00358.1|3084430_3084928_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00359.1|3085023_3085731_+	endonuclease I	NA	NA	NA	NA	NA
AYU00360.1|3085807_3086539_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYU00361.1|3086558_3087506_+	glutathione synthetase	NA	NA	NA	NA	NA
AYU00362.1|3087721_3088285_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00363.1|3088284_3088701_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYU00364.1|3088747_3089434_-	global regulatory protein	NA	NA	NA	NA	NA
AYU00365.1|3089563_3090544_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYU00366.1|3090561_3091266_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00367.1|3091284_3091851_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00368.1|3091847_3092138_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00369.1|3092145_3092739_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYU00370.1|3092731_3093868_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYU00371.1|3093958_3094966_-	hypothetical protein	NA	NA	NA	NA	NA
AYU00372.1|3095098_3096145_-	L-asparaginase	NA	NA	NA	NA	NA
AYU00373.1|3096463_3096922_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU00374.1|3097044_3097764_-	hypothetical protein	NA	NA	NA	NA	NA
AYU00375.1|3097813_3098140_-	hypothetical protein	NA	NA	NA	NA	NA
AYU00376.1|3098139_3098859_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYU00377.1|3099013_3100066_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYU00378.1|3100093_3100369_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYU00379.1|3100481_3101567_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYU00380.1|3101783_3103040_+	nucleoside permease	NA	NA	NA	NA	NA
AYU00381.1|3105650_3106358_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00382.1|3108947_3109214_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYU00383.1|3109456_3109735_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 10
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	3487966	3526024	4807245	integrase,portal,terminase,transposase,capsid,plate,tail	Salmonella_phage(82.05%)	46	3482930:3482944	3495096:3495110
3482930:3482944	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYU00712.1|3487966_3489613_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYU00713.1|3489752_3489851_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYU00714.1|3490106_3490436_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00715.1|3490476_3491529_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYU00716.1|3491924_3492494_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYU00717.1|3492619_3492841_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00718.1|3492873_3493383_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYU00719.1|3493557_3493782_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00720.1|3493804_3494146_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYU00721.1|3494213_3494447_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYU00722.1|3494446_3494674_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYU00723.1|3494670_3495528_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3495096:3495110	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYU00724.1|3495524_3497939_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYU00725.1|3498092_3498281_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYU00726.1|3500248_3501163_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00727.1|3501159_3501900_+	hypothetical protein	NA	NA	NA	NA	NA
AYU00728.1|3501934_3502972_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYU00729.1|3502971_3504738_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYU00730.1|3504880_3505714_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYU00731.1|3505730_3506789_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYU00732.1|3506792_3507443_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYU00733.1|3507475_3508003_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYU00734.1|3508002_3508206_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYU00735.1|3508209_3508425_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYU00736.1|3508444_3508918_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYU00737.1|3508919_3509297_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYU00738.1|3509293_3509722_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYU00739.1|3509817_3510249_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYU00740.1|3510241_3510688_+|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYU00741.1|3510756_3511335_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYU00742.1|3511331_3511691_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYU00743.1|3511677_3512586_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYU00744.1|3512578_3513184_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYU00745.1|3513180_3514695_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYU00746.1|3514694_3515288_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYU00747.1|3515259_3515700_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYU00748.1|3516122_3516695_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYU00749.1|3516837_3518010_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYU00750.1|3518019_3518535_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYU00751.1|3518589_3518892_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYU00752.1|3518906_3519026_+	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYU00753.1|3519018_3522096_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYU00754.1|3522092_3522578_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYU00755.1|3522574_3523675_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYU00756.1|3523765_3523984_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYU00757.1|3525565_3526024_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 11
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	3792936	3810345	4807245	integrase,transposase	Escherichia_phage(30.0%)	17	3790642:3790701	3815142:3815909
3790642:3790701	attL	GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC	NA	NA	NA	NA
AYU00976.1|3792936_3795903_-|transposase	transposase tn21	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
AYU00977.1|3795905_3796466_-	Tn21 resolvase	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
AYU00978.1|3796591_3797155_-	transposon tn21 modulator protein	NA	NA	NA	NA	NA
AYU00979.1|3797144_3798158_-|integrase	phage integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AYU00980.1|3798189_3798789_+	dihydrofolate reductase	NA	A0A1B2IBQ4	Erwinia_phage	31.4	3.1e-15
AYU00981.1|3798985_3799366_+	Ethidium bromide-methyl viologen resistance protein EmrE	NA	NA	NA	NA	NA
AYU00982.1|3799272_3800199_+	sulfonamide-resistant dihydropteroate synthase sul1	NA	NA	NA	NA	NA
AYU00983.1|3800432_3801155_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	3.2e-139
AYU00984.1|3801187_3801454_+	resolvase	NA	Q1MVP4	Enterobacteria_phage	100.0	1.4e-36
AYU00985.1|3801636_3802497_+	beta-lactamase	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
AYU00986.1|3803076_3803799_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	3.2e-139
AYU00987.1|3803859_3804696_-	streptomycin phosphotransferase	NA	NA	NA	NA	NA
AYU00988.1|3804695_3805499_-	streptomycin phosphotransferase	NA	Q75ZG1	Hepacivirus	34.3	4.9e-24
AYU00989.1|3805559_3806375_-	dihydropteroate synthase	NA	NA	NA	NA	NA
AYU00990.1|3806682_3807534_-	replication protein	NA	NA	NA	NA	NA
AYU00991.1|3808289_3809012_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	3.2e-139
AYU00992.1|3809040_3810345_-|integrase	integrase	integrase	NA	NA	NA	NA
3815142:3815909	attR	GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC	NA	NA	NA	NA
>prophage 12
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	4466997	4541161	4807245	portal,integrase,terminase,capsid,plate,tail	Salmonella_phage(82.98%)	76	4528498:4528514	4541320:4541336
AYU01556.1|4466997_4468947_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYU01557.1|4469018_4469927_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01558.1|4470000_4470900_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01559.1|4470941_4471301_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01560.1|4471400_4471670_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01561.1|4471801_4473076_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYU01562.1|4473295_4473673_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01563.1|4473759_4473978_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYU01564.1|4474045_4475146_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYU01565.1|4475142_4475628_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYU01566.1|4475627_4478408_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYU01567.1|4478400_4478520_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYU01568.1|4478534_4478837_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYU01569.1|4478891_4479407_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYU01570.1|4479416_4480589_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYU01571.1|4481123_4481846_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYU01572.1|4482043_4482451_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYU01573.1|4482457_4484077_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYU01574.1|4484073_4484679_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYU01575.1|4484671_4485580_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AYU01576.1|4485566_4485926_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYU01577.1|4485922_4486501_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYU01578.1|4486569_4487016_-|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYU01579.1|4487008_4487440_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AYU01580.1|4487535_4487961_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYU01581.1|4487960_4488338_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYU01582.1|4488342_4488813_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYU01583.1|4488832_4489048_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYU01584.1|4489051_4489255_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYU01585.1|4489254_4489719_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYU01586.1|4489812_4490463_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYU01587.1|4490466_4491531_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYU01588.1|4491547_4492381_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYU01589.1|4492523_4494290_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYU01590.1|4494286_4495333_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYU01591.1|4495381_4496077_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01592.1|4496096_4497161_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01593.1|4497157_4498222_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01594.1|4499146_4499476_-	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	90.8	6.2e-50
AYU01595.1|4499472_4501542_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.9	0.0e+00
AYU01596.1|4501532_4502393_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYU01597.1|4502389_4502974_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYU01598.1|4502970_4503198_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYU01599.1|4503197_4503431_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYU01600.1|4503498_4503840_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYU01601.1|4503803_4504004_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYU01602.1|4504011_4504521_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYU01603.1|4504553_4504796_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYU01604.1|4504912_4505545_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYU01605.1|4505548_4506574_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYU01606.1|4506680_4507034_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYU01607.1|4507650_4507938_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01608.1|4507948_4508839_+	methyltransferase	NA	NA	NA	NA	NA
AYU01609.1|4508838_4509585_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01610.1|4509886_4511857_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYU01611.1|4511876_4513181_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYU01612.1|4513203_4513899_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYU01613.1|4513924_4514719_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYU01614.1|4514728_4515796_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYU01615.1|4515840_4517577_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYU01616.1|4517576_4520072_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYU01617.1|4520095_4521142_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYU01618.1|4521144_4522422_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYU01619.1|4522666_4523206_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYU01620.1|4524059_4525571_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYU01621.1|4525554_4527144_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01622.1|4527307_4528321_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4528498:4528514	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYU01623.1|4528747_4529041_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01624.1|4529037_4529526_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01625.1|4529705_4530158_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01626.1|4535380_4535842_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01627.1|4535838_4536060_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYU01628.1|4536916_4537699_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01629.1|4538325_4538550_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01630.1|4538679_4539591_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01631.1|4539901_4541161_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4541320:4541336	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 13
CP029863	Salmonella enterica subsp. enterica serovar Typhi strain 343077_278127 chromosome, complete genome	4807245	4683413	4693672	4807245	capsid	Enterobacteria_phage(77.78%)	13	NA	NA
AYU01768.1|4683413_4684490_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYU01769.1|4684486_4685560_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYU01770.1|4685534_4686698_-	hypothetical protein	NA	NA	NA	NA	NA
AYU01771.1|4686973_4687540_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYU01772.1|4687555_4687795_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYU01773.1|4687798_4688659_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYU01774.1|4689081_4689405_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYU01775.1|4689388_4689889_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
AYU01776.1|4689885_4690113_+	hypothetical protein	NA	NA	NA	NA	NA
AYU01777.1|4690109_4690430_+	P4 phage protein	NA	NA	NA	NA	NA
AYU01778.1|4690444_4691119_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	75.1	1.4e-85
AYU01779.1|4691115_4692777_+	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	90.2	1.9e-296
AYU01780.1|4693513_4693672_+	recombinase	NA	Q7M297	Enterobacteria_phage	57.4	3.9e-10
