The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	868751	876063	4795890	protease,integrase	Dickeya_phage(16.67%)	6	870002:870016	881181:881195
AYU45739.1|868751_869870_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYU45740.1|869866_871813_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
870002:870016	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYU45741.1|871942_872164_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYU45742.1|872487_872808_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYU45743.1|872838_875115_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYU45744.1|875685_876063_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
881181:881195	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	946853	1024166	4795890	protease,transposase,tail,integrase,terminase	Salmonella_phage(73.33%)	93	929267:929286	999527:999546
929267:929286	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYU45793.1|946853_948194_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYU45794.1|948190_948439_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYU45795.1|948479_948725_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYU45796.1|948724_949606_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYU45797.1|949602_950667_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYU45798.1|950744_951425_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYU45799.1|951421_952207_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYU45800.1|952212_952509_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYU45801.1|952599_952800_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYU45802.1|953088_953493_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYU45803.1|953824_954199_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYU45804.1|954283_955267_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYU45805.1|955269_956019_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYU45806.1|956029_956377_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYU45807.1|956373_956898_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYU45808.1|956897_957371_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYU45809.1|957374_957947_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYU45810.1|958040_958307_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYU45811.1|958388_958550_+	bacteriophage protein	NA	NA	NA	NA	NA
AYU45812.1|958982_959480_+	bacteriophage protein	NA	NA	NA	NA	NA
AYU45813.1|959664_959904_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYU45814.1|959893_960199_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYU45815.1|960238_960841_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYU45816.1|961049_961661_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYU45817.1|961793_962591_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYU45818.1|962989_963115_+	bacteriophage protein	NA	NA	NA	NA	NA
AYU45819.1|963250_963700_-	lipoprotein	NA	NA	NA	NA	NA
AYU45820.1|963916_964306_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYU45821.1|964292_964574_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYU45822.1|964573_965188_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYU45823.1|965407_965662_+	hypothetical protein	NA	NA	NA	NA	NA
AYU45824.1|965766_966144_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYU45825.1|966207_966468_+	hypothetical protein	NA	NA	NA	NA	NA
AYU45826.1|966557_967310_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYU45827.1|967275_968679_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYU45828.1|968678_970145_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	96.7	6.4e-272
AYU45829.1|970239_970770_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYU45830.1|970784_972017_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYU45831.1|972021_972519_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYU45832.1|972530_973472_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYU45833.1|973513_973882_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYU45834.1|973847_974255_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYU45835.1|974251_974806_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYU45836.1|974792_975182_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYU45837.1|975156_975720_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYU45838.1|975723_976869_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYU45839.1|976880_977321_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYU45840.1|977324_977777_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYU45841.1|977954_979907_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYU45842.1|979906_980557_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYU45843.1|980560_980863_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYU45844.1|980865_981897_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYU45845.1|981893_982229_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYU45846.1|982423_983155_+	bacteriophage protein	NA	NA	NA	NA	NA
AYU45847.1|983154_983583_+	bacteriophage protein	NA	NA	NA	NA	NA
AYU45848.1|983641_984397_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYU45849.1|984484_984622_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYU45850.1|984637_984991_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYU45851.1|984991_986191_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.2	2.5e-213
AYU45852.1|986187_986868_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYU45853.1|986867_988379_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.1	1.7e-110
AYU45854.1|988393_988912_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYU45855.1|989833_990535_-	hypothetical protein	NA	NA	NA	NA	NA
AYU45856.1|990847_991126_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYU45857.1|991551_994164_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYU45858.1|994371_995382_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYU45859.1|995544_996090_+	hypothetical protein	NA	NA	NA	NA	NA
AYU45860.1|996086_997196_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYU45861.1|997294_999403_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYU45862.1|999415_1001323_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
999527:999546	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYU45863.1|1001337_1002591_+	inner membrane protein	NA	NA	NA	NA	NA
AYU45864.1|1002595_1004236_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYU45865.1|1004232_1004796_+	lipoprotein	NA	NA	NA	NA	NA
AYU45866.1|1005049_1005217_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYU45867.1|1005316_1005835_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYU45868.1|1005903_1007664_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYU45869.1|1007849_1008302_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYU45870.1|1008373_1009426_-	outer membrane protein A	NA	NA	NA	NA	NA
AYU45871.1|1009780_1010290_-	cell division inhibitor	NA	NA	NA	NA	NA
AYU45872.1|1010506_1011112_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYU45873.1|1011098_1013252_-	inner membrane protein	NA	NA	NA	NA	NA
AYU45874.1|1013270_1013717_-	hypothetical protein	NA	NA	NA	NA	NA
AYU45875.1|1013840_1015895_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYU45876.1|1015930_1016389_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYU45877.1|1016483_1017146_-	hypothetical protein	NA	NA	NA	NA	NA
AYU45878.1|1017316_1017733_+	hypothetical protein	NA	NA	NA	NA	NA
AYU45879.1|1017777_1018095_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYU45880.1|1018152_1019364_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYU45881.1|1020495_1020954_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU45882.1|1021690_1021972_+	acylphosphatase	NA	NA	NA	NA	NA
AYU45883.1|1021968_1022298_-	sulfite reductase	NA	NA	NA	NA	NA
AYU45884.1|1022384_1023044_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYU45885.1|1023707_1024166_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	1467462	1541060	4795890	protease,transposase,tail,tRNA,head,plate	Burkholderia_virus(44.12%)	72	NA	NA
AYU46284.1|1467462_1467921_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU46285.1|1468423_1468705_+	stress response protein	NA	NA	NA	NA	NA
AYU46286.1|1468973_1469795_+|protease	serine protease	protease	NA	NA	NA	NA
AYU46287.1|1469829_1470159_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYU46288.1|1470145_1470508_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYU46289.1|1470619_1470790_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46290.1|1470924_1471959_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46291.1|1472133_1473522_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYU46292.1|1473532_1475062_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYU46293.1|1475588_1476533_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46294.1|1476714_1477104_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYU46295.1|1477075_1477528_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYU46296.1|1477722_1477953_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46297.1|1477949_1478633_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYU46298.1|1479217_1479520_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46299.1|1480090_1480621_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYU46300.1|1480920_1482087_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYU46301.1|1482097_1483867_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYU46302.1|1485311_1485662_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYU46303.1|1486376_1487027_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYU46304.1|1487349_1487661_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYU46305.1|1487660_1488206_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYU46306.1|1488202_1489798_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYU46307.1|1489797_1491294_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYU46308.1|1491274_1492096_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYU46309.1|1492098_1492557_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.2e-30
AYU46310.1|1492771_1493887_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYU46311.1|1493901_1494855_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYU46312.1|1494864_1495203_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46313.1|1495204_1495651_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYU46314.1|1495650_1496115_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYU46315.1|1496355_1497783_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYU46316.1|1497782_1498304_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYU46317.1|1498306_1498588_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46318.1|1498685_1499021_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46319.1|1499196_1501662_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.5	1.1e-167
AYU46320.1|1501661_1502546_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYU46321.1|1502542_1502758_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYU46322.1|1502745_1503900_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYU46323.1|1503896_1504424_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYU46324.1|1504480_1504828_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYU46325.1|1504818_1505922_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYU46326.1|1505914_1506493_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYU46327.1|1506495_1507521_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYU46328.1|1508034_1508652_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYU46329.1|1510162_1510735_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYU46330.1|1511015_1512398_+	amino acid permease	NA	NA	NA	NA	NA
AYU46331.1|1512459_1512795_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46332.1|1512921_1513653_+	two-component response regulator	NA	NA	NA	NA	NA
AYU46333.1|1514133_1515285_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	4.2e-117
AYU46334.1|1515437_1517144_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYU46335.1|1517251_1518556_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYU46336.1|1518631_1519561_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYU46337.1|1519557_1520961_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYU46338.1|1521128_1522775_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYU46339.1|1522974_1524150_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYU46340.1|1524252_1525761_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46341.1|1526466_1527468_+	adenosine deaminase	NA	NA	NA	NA	NA
AYU46342.1|1527541_1528657_-	oxidoreductase	NA	NA	NA	NA	NA
AYU46343.1|1528759_1528915_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46344.1|1529213_1529429_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYU46345.1|1529517_1529958_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46346.1|1530034_1530616_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYU46347.1|1530615_1531194_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYU46348.1|1531186_1533208_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYU46349.1|1533208_1534267_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYU46350.1|1534270_1534891_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYU46351.1|1534893_1535586_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYU46352.1|1535585_1536221_+	endonuclease III	NA	NA	NA	NA	NA
AYU46353.1|1536821_1538327_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYU46354.1|1538431_1539037_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYU46355.1|1539785_1541060_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	1722091	1726503	4795890		Escherichia_phage(50.0%)	6	NA	NA
AYU46539.1|1722091_1722331_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
AYU46540.1|1723203_1724013_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYU46541.1|1724085_1724463_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYU46542.1|1724610_1725153_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYU46543.1|1725344_1726073_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYU46544.1|1726089_1726503_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	1826578	1862665	4795890	holin,integrase	Salmonella_phage(36.59%)	47	1853131:1853144	1868190:1868203
AYU46631.1|1826578_1826932_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	86.5	1.0e-29
AYU46632.1|1826931_1827999_-	bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	82.8	7.7e-158
AYU46633.1|1828001_1828304_-	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	92.0	2.2e-49
AYU46634.1|1828303_1828891_-	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	88.0	1.5e-83
AYU46635.1|1828890_1830879_-	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	74.8	1.0e-272
AYU46636.1|1831056_1831509_-	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	72.7	4.7e-56
AYU46637.1|1831512_1831953_-	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	75.3	7.0e-57
AYU46638.1|1831963_1833109_-	hypothetical protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	73.5	1.0e-160
AYU46639.1|1833112_1833676_-	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.7	1.7e-79
AYU46640.1|1833650_1834040_-	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	96.1	2.5e-66
AYU46641.1|1834026_1834581_-	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	71.7	8.0e-66
AYU46642.1|1834577_1834985_-	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	94.8	9.7e-69
AYU46643.1|1835359_1836301_-	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	86.9	3.2e-155
AYU46644.1|1836312_1836819_-	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	79.9	3.7e-70
AYU46645.1|1836822_1838043_-	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	88.0	1.2e-199
AYU46646.1|1838057_1838588_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	84.0	1.7e-81
AYU46647.1|1838682_1840149_-	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	92.4	1.8e-261
AYU46648.1|1840148_1841552_-	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	69.2	3.2e-188
AYU46649.1|1842321_1842501_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46650.1|1842490_1842835_-	hypothetical protein	NA	Q8SBD8	Shigella_phage	74.5	1.4e-36
AYU46651.1|1843029_1843506_-	endolysin	NA	Q8SBE0	Shigella_phage	96.2	1.0e-85
AYU46652.1|1843509_1843851_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	89.2	4.0e-52
AYU46653.1|1844198_1844768_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46654.1|1845001_1845691_-	bacteriophage protein	NA	A0A0N7C203	Escherichia_phage	77.9	2.1e-52
AYU46655.1|1845831_1846386_-	hypothetical protein	NA	A0A0U2S606	Escherichia_phage	71.0	1.3e-71
AYU46656.1|1846382_1846673_-	bacteriophage protein	NA	A0A0U2KD41	Escherichia_phage	89.6	3.3e-47
AYU46657.1|1846672_1847272_-	hypothetical protein	NA	A0A0U2RT94	Escherichia_phage	93.0	5.9e-107
AYU46658.1|1847343_1847556_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46659.1|1847833_1848046_-	Hok/Gef family protein	NA	A0A0P0ZAX5	Stx2-converting_phage	95.7	9.6e-28
AYU46660.1|1848414_1849347_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46661.1|1849343_1849898_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46662.1|1849996_1850404_-	bacteriophage protein	NA	A0A2R2Z307	Escherichia_phage	95.8	1.7e-57
AYU46663.1|1850410_1850833_-	hypothetical protein	NA	A0A0U2QQN3	Escherichia_phage	91.3	1.7e-63
AYU46664.1|1850848_1851643_-	hypothetical protein	NA	A0A0U2SAW4	Escherichia_phage	88.5	1.3e-117
AYU46665.1|1851632_1852379_-	DNA replication protein	NA	V5UQI5	Shigella_phage	79.3	2.0e-112
AYU46666.1|1852385_1853174_-	hypothetical protein	NA	G9L6A8	Escherichia_phage	65.0	3.9e-42
1853131:1853144	attL	TTATCCGGCGTAAT	NA	NA	NA	NA
AYU46667.1|1853251_1853674_-	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	94.3	3.4e-69
AYU46668.1|1853670_1853913_-	cro repressor	NA	K7PKH4	Enterobacteria_phage	62.1	2.3e-17
AYU46669.1|1854009_1854429_+	regulator	NA	K7PH71	Enterobacterial_phage	60.6	3.1e-14
AYU46670.1|1854671_1854890_+	hypothetical protein	NA	M4QQ57	Salicola_phage	53.2	2.5e-07
AYU46671.1|1855043_1855256_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46672.1|1855762_1855984_+	cell division inhibitor protein	NA	A0A0U2RTC4	Escherichia_phage	97.3	6.9e-37
AYU46673.1|1856228_1856504_+	bacteriophage protein	NA	A0A0U2QW85	Escherichia_phage	92.3	3.7e-40
AYU46674.1|1856603_1859732_+	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	79.5	0.0e+00
AYU46675.1|1859728_1860796_+	hypothetical protein	NA	A0A0U2S5Y9	Escherichia_phage	62.5	1.8e-114
AYU46676.1|1860974_1861235_+	gydaC	NA	A0A0U2QL97	Escherichia_phage	97.9	1.7e-18
AYU46677.1|1861588_1862665_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.7	6.9e-98
1868190:1868203	attR	TTATCCGGCGTAAT	NA	NA	NA	NA
>prophage 6
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	1967107	1974341	4795890		Morganella_phage(33.33%)	7	NA	NA
AYU46781.1|1967107_1968538_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AYU46782.1|1968611_1969307_-	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AYU46783.1|1969386_1969698_-	hypothetical protein	NA	NA	NA	NA	NA
AYU46784.1|1970348_1971533_+	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AYU46785.1|1971992_1972205_-	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AYU46786.1|1972650_1973919_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AYU46787.1|1973921_1974341_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 7
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	2058083	2068590	4795890		Enterobacteria_phage(37.5%)	10	NA	NA
AYU46864.1|2058083_2059397_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYU46865.1|2059423_2060503_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYU46866.1|2060507_2061281_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYU46867.1|2061296_2062271_-	reductase RfbI	NA	NA	NA	NA	NA
AYU46868.1|2062276_2062828_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYU46869.1|2062828_2063707_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYU46870.1|2063754_2064654_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYU46871.1|2064653_2065739_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYU46872.1|2066115_2067009_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYU46873.1|2067186_2068590_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 8
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	2144482	2153653	4795890	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYU46930.1|2144482_2146516_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYU46931.1|2146756_2147215_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYU46932.1|2147386_2147917_+	lipoprotein	NA	NA	NA	NA	NA
AYU46933.1|2147973_2148441_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYU46934.1|2148487_2149207_-	two-component system response regulator	NA	NA	NA	NA	NA
AYU46935.1|2149203_2150889_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYU46936.1|2151111_2151843_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYU46937.1|2151902_2152010_+	hypothetical protein	NA	NA	NA	NA	NA
AYU46938.1|2151990_2152722_-	ABC transporter permease	NA	NA	NA	NA	NA
AYU46939.1|2152705_2153653_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 9
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	2689096	2702488	4795890	tail	Salmonella_phage(70.0%)	11	NA	NA
AYU47369.1|2689096_2689315_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYU47370.1|2689405_2690506_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYU47371.1|2690502_2690988_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYU47372.1|2690984_2694062_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
AYU47373.1|2694054_2694174_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYU47374.1|2694188_2694491_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYU47375.1|2694545_2695061_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYU47376.1|2695070_2696243_-|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYU47377.1|2696385_2696958_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYU47378.1|2697635_2698751_+	glycosyltransferase	NA	NA	NA	NA	NA
AYU47379.1|2698831_2702488_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 10
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	3019860	3063563	4795890	protease,bacteriocin,transposase,tRNA	Bacillus_virus(33.33%)	44	NA	NA
AYU47666.1|3019860_3020319_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU47667.1|3020508_3021588_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYU47668.1|3021689_3022853_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYU47669.1|3022874_3023921_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYU47670.1|3024294_3024720_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47671.1|3024745_3025324_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47672.1|3025357_3026032_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47673.1|3026013_3026697_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYU47674.1|3026690_3027347_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYU47675.1|3027451_3027910_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU47676.1|3028098_3030090_-	transketolase	NA	NA	NA	NA	NA
AYU47677.1|3030365_3031124_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYU47678.1|3031224_3032145_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYU47679.1|3032372_3034349_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYU47680.1|3034357_3034489_-	hypothetical protein	NA	NA	NA	NA	NA
AYU47681.1|3034783_3035083_-	membrane protein	NA	NA	NA	NA	NA
AYU47682.1|3035138_3036293_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYU47683.1|3036785_3038180_+	galactose-proton symport	NA	NA	NA	NA	NA
AYU47684.1|3038258_3038756_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47685.1|3038851_3039559_+	endonuclease I	NA	NA	NA	NA	NA
AYU47686.1|3039635_3040367_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYU47687.1|3040386_3041334_+	glutathione synthetase	NA	NA	NA	NA	NA
AYU47688.1|3041549_3042113_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47689.1|3042112_3042529_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYU47690.1|3042575_3043262_-	global regulatory protein	NA	NA	NA	NA	NA
AYU47691.1|3043391_3044372_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYU47692.1|3044389_3045094_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47693.1|3045112_3045679_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47694.1|3045675_3045966_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47695.1|3045973_3046567_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYU47696.1|3046559_3047696_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYU47697.1|3047786_3048794_-	hypothetical protein	NA	NA	NA	NA	NA
AYU47698.1|3048926_3049973_-	L-asparaginase	NA	NA	NA	NA	NA
AYU47699.1|3050291_3050750_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYU47700.1|3050872_3051592_-	hypothetical protein	NA	NA	NA	NA	NA
AYU47701.1|3051641_3051968_-	hypothetical protein	NA	NA	NA	NA	NA
AYU47702.1|3051967_3052687_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYU47703.1|3052841_3053894_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYU47704.1|3053921_3054197_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYU47705.1|3054309_3055395_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYU47706.1|3055611_3056868_+	nucleoside permease	NA	NA	NA	NA	NA
AYU47707.1|3059478_3060186_+	hypothetical protein	NA	NA	NA	NA	NA
AYU47708.1|3062775_3063042_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYU47709.1|3063284_3063563_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 11
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	3441018	3479079	4795890	capsid,transposase,tail,integrase,plate,terminase,portal	Salmonella_phage(82.05%)	46	3435982:3435996	3448148:3448162
3435982:3435996	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYU48038.1|3441018_3442665_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYU48039.1|3442804_3442903_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYU48040.1|3443158_3443488_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48041.1|3443528_3444581_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYU48042.1|3444976_3445546_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYU48043.1|3445671_3445893_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48044.1|3445925_3446435_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYU48045.1|3446609_3446834_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48046.1|3446856_3447198_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYU48047.1|3447265_3447499_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYU48048.1|3447498_3447726_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYU48049.1|3447722_3448580_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3448148:3448162	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYU48050.1|3448576_3450991_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYU48051.1|3451144_3451333_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYU48052.1|3453300_3454215_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48053.1|3454211_3454952_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48054.1|3454986_3456024_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYU48055.1|3456023_3457790_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYU48056.1|3457932_3458766_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYU48057.1|3458782_3459841_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYU48058.1|3459844_3460495_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYU48059.1|3460527_3461055_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYU48060.1|3461054_3461258_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYU48061.1|3461261_3461477_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYU48062.1|3461496_3461970_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYU48063.1|3461971_3462349_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYU48064.1|3462345_3462774_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYU48065.1|3462869_3463301_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYU48066.1|3463293_3463740_+|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYU48067.1|3463808_3464387_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYU48068.1|3464383_3464743_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYU48069.1|3464729_3465638_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYU48070.1|3465630_3466236_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYU48071.1|3466232_3467747_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYU48072.1|3467746_3468340_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYU48073.1|3468311_3468752_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYU48074.1|3469174_3469747_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYU48075.1|3469889_3471062_+|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYU48076.1|3471071_3471587_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYU48077.1|3471641_3471944_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYU48078.1|3471958_3472078_+	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYU48079.1|3472070_3475148_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
AYU48080.1|3475144_3475630_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYU48081.1|3475626_3476727_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYU48082.1|3476817_3477036_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYU48083.1|3478620_3479079_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 12
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	4394744	4469014	4795890	capsid,tail,integrase,plate,terminase,portal	Salmonella_phage(82.61%)	75	4456258:4456274	4469173:4469189
AYU48853.1|4394744_4396694_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYU48854.1|4396765_4397674_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48855.1|4397747_4398647_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48856.1|4398688_4399048_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48857.1|4399147_4399417_-	hypothetical protein	NA	NA	NA	NA	NA
AYU48858.1|4399548_4400823_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYU48859.1|4401042_4401420_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48860.1|4401506_4401725_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYU48861.1|4401792_4402893_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYU48862.1|4402889_4403375_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYU48863.1|4403374_4406155_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYU48864.1|4406147_4406267_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYU48865.1|4406281_4406584_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYU48866.1|4406638_4407154_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYU48867.1|4407163_4408336_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYU48868.1|4408870_4409593_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYU48869.1|4409790_4410198_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYU48870.1|4410204_4411824_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYU48871.1|4411820_4412426_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYU48872.1|4412418_4413327_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AYU48873.1|4413313_4413673_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYU48874.1|4413669_4414248_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYU48875.1|4414316_4414763_-|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYU48876.1|4414755_4415187_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
AYU48877.1|4415282_4415708_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYU48878.1|4415707_4416085_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYU48879.1|4416089_4416560_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYU48880.1|4416579_4416795_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYU48881.1|4416798_4417002_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYU48882.1|4417001_4417466_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	97.4	7.1e-84
AYU48883.1|4417559_4418210_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYU48884.1|4418213_4419278_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYU48885.1|4419294_4420128_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYU48886.1|4420270_4422037_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYU48887.1|4422033_4423080_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYU48888.1|4423128_4423824_-	hypothetical protein	NA	NA	NA	NA	NA
AYU48889.1|4423843_4424908_-	hypothetical protein	NA	NA	NA	NA	NA
AYU48890.1|4424904_4425969_-	hypothetical protein	NA	NA	NA	NA	NA
AYU48891.1|4426893_4429302_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
AYU48892.1|4429292_4430153_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYU48893.1|4430149_4430734_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYU48894.1|4430730_4430958_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYU48895.1|4430957_4431191_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYU48896.1|4431258_4431600_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYU48897.1|4431563_4431764_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYU48898.1|4431771_4432281_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYU48899.1|4432313_4432556_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYU48900.1|4432672_4433305_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYU48901.1|4433308_4434334_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYU48902.1|4434440_4434794_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYU48903.1|4435410_4435698_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48904.1|4435708_4436599_+	methyltransferase	NA	NA	NA	NA	NA
AYU48905.1|4436598_4437345_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48906.1|4437646_4439617_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYU48907.1|4439636_4440941_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYU48908.1|4440963_4441659_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYU48909.1|4441684_4442479_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYU48910.1|4442488_4443556_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYU48911.1|4443600_4445337_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYU48912.1|4445336_4447832_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYU48913.1|4447855_4448902_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYU48914.1|4448904_4450182_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYU48915.1|4450426_4450966_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYU48916.1|4451819_4453331_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYU48917.1|4453314_4454904_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48918.1|4455067_4456081_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4456258:4456274	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYU48919.1|4456507_4456801_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48920.1|4456797_4457286_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48921.1|4457465_4457918_-	hypothetical protein	NA	NA	NA	NA	NA
AYU48922.1|4463140_4463602_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48923.1|4463598_4463820_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYU48924.1|4464676_4465459_+	hypothetical protein	NA	NA	NA	NA	NA
AYU48925.1|4466085_4466310_-	hypothetical protein	NA	NA	NA	NA	NA
AYU48926.1|4466439_4467444_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYU48927.1|4467754_4469014_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4469173:4469189	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 13
CP029959	Salmonella enterica subsp. enterica serovar Typhi strain 343078_256191 chromosome, complete genome	4795890	4611270	4617746	4795890	capsid	Enterobacteria_phage(66.67%)	8	NA	NA
AYU49064.1|4611270_4612347_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYU49065.1|4612343_4613417_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYU49066.1|4613391_4614555_-	hypothetical protein	NA	NA	NA	NA	NA
AYU49067.1|4614830_4615397_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYU49068.1|4615412_4615652_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYU49069.1|4615655_4616516_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYU49070.1|4616938_4617262_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYU49071.1|4617245_4617746_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
