The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	930275	937587	4775702	integrase,protease	Dickeya_phage(16.67%)	6	931526:931540	942889:942903
AYT16506.1|930275_931394_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYT16507.1|931390_933337_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
931526:931540	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYT16508.1|933466_933688_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYT16509.1|934011_934332_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYT16510.1|934362_936639_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYT16511.1|937209_937587_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
942889:942903	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	1008740	1086053	4775702	tail,transposase,integrase,protease,terminase	Salmonella_phage(73.33%)	93	990819:990838	1061414:1061433
990819:990838	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT16561.1|1008740_1010081_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYT16562.1|1010077_1010326_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYT16563.1|1010366_1010612_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYT16564.1|1010611_1011493_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYT16565.1|1011489_1012554_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYT16566.1|1012631_1013312_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYT16567.1|1013308_1014094_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYT16568.1|1014099_1014396_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYT16569.1|1014486_1014687_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYT16570.1|1014975_1015380_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYT16571.1|1015711_1016086_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYT16572.1|1016170_1017154_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYT16573.1|1017156_1017906_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYT16574.1|1017916_1018264_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYT16575.1|1018260_1018785_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYT16576.1|1018784_1019258_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYT16577.1|1019261_1019834_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYT16578.1|1019927_1020194_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYT16579.1|1020275_1020437_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT16580.1|1020869_1021367_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT16581.1|1021551_1021791_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYT16582.1|1021780_1022086_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYT16583.1|1022125_1022728_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYT16584.1|1022936_1023548_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYT16585.1|1023680_1024478_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYT16586.1|1024876_1025002_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT16587.1|1025137_1025587_-	lipoprotein	NA	NA	NA	NA	NA
AYT16588.1|1025803_1026193_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYT16589.1|1026179_1026461_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYT16590.1|1026460_1027075_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYT16591.1|1027294_1027549_+	hypothetical protein	NA	NA	NA	NA	NA
AYT16592.1|1027653_1028031_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYT16593.1|1028094_1028355_+	hypothetical protein	NA	NA	NA	NA	NA
AYT16594.1|1028444_1029197_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYT16595.1|1029162_1030566_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYT16596.1|1030565_1032035_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYT16597.1|1032126_1032657_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYT16598.1|1032671_1033904_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYT16599.1|1033908_1034406_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYT16600.1|1034417_1035359_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYT16601.1|1035400_1035769_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYT16602.1|1035734_1036142_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYT16603.1|1036138_1036693_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYT16604.1|1036679_1037069_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYT16605.1|1037043_1037607_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYT16606.1|1037610_1038756_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYT16607.1|1038767_1039208_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYT16608.1|1039211_1039664_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYT16609.1|1039841_1041794_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYT16610.1|1041793_1042444_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYT16611.1|1042447_1042750_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYT16612.1|1042752_1043784_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYT16613.1|1043780_1044116_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYT16614.1|1044310_1045042_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT16615.1|1045041_1045470_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT16616.1|1045528_1046284_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYT16617.1|1046371_1046509_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYT16618.1|1046524_1046878_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYT16619.1|1046878_1048078_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYT16620.1|1048074_1048755_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYT16621.1|1048754_1050266_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.1	5.9e-111
AYT16622.1|1050280_1050799_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYT16623.1|1051720_1052422_-	hypothetical protein	NA	NA	NA	NA	NA
AYT16624.1|1052734_1053013_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYT16625.1|1053438_1056051_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYT16626.1|1056258_1057269_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYT16627.1|1057431_1057977_+	hypothetical protein	NA	NA	NA	NA	NA
AYT16628.1|1057973_1059083_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYT16629.1|1059181_1061290_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYT16630.1|1061302_1063210_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1061414:1061433	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT16631.1|1063224_1064478_+	inner membrane protein	NA	NA	NA	NA	NA
AYT16632.1|1064482_1066123_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYT16633.1|1066119_1066683_+	lipoprotein	NA	NA	NA	NA	NA
AYT16634.1|1066936_1067104_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYT16635.1|1067203_1067722_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYT16636.1|1067790_1069551_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYT16637.1|1069736_1070189_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYT16638.1|1070260_1071313_-	outer membrane protein A	NA	NA	NA	NA	NA
AYT16639.1|1071667_1072177_-	cell division inhibitor	NA	NA	NA	NA	NA
AYT16640.1|1072393_1072999_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYT16641.1|1072985_1075139_-	inner membrane protein	NA	NA	NA	NA	NA
AYT16642.1|1075157_1075604_-	hypothetical protein	NA	NA	NA	NA	NA
AYT16643.1|1075727_1077782_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYT16644.1|1077817_1078276_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYT16645.1|1078370_1079033_-	hypothetical protein	NA	NA	NA	NA	NA
AYT16646.1|1079203_1079620_+	hypothetical protein	NA	NA	NA	NA	NA
AYT16647.1|1079664_1079982_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYT16648.1|1080039_1081251_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYT16649.1|1082382_1082841_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT16650.1|1083577_1083859_+	acylphosphatase	NA	NA	NA	NA	NA
AYT16651.1|1083855_1084185_-	sulfite reductase	NA	NA	NA	NA	NA
AYT16652.1|1084271_1084931_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYT16653.1|1085594_1086053_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	1530978	1604972	4775702	plate,tail,head,transposase,protease,tRNA	Burkholderia_virus(43.24%)	80	NA	NA
AYT17053.1|1530978_1531437_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT17054.1|1531939_1532221_+	stress response protein	NA	NA	NA	NA	NA
AYT17055.1|1532489_1533311_+|protease	serine protease	protease	NA	NA	NA	NA
AYT17056.1|1533345_1533675_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYT17057.1|1533661_1534024_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYT17058.1|1534135_1534306_-	hypothetical protein	NA	NA	NA	NA	NA
AYT17059.1|1534440_1535475_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17060.1|1535649_1537038_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYT17061.1|1537048_1538578_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYT17062.1|1539104_1540049_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17063.1|1540230_1540620_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYT17064.1|1540591_1541044_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYT17065.1|1541238_1541469_-	hypothetical protein	NA	NA	NA	NA	NA
AYT17066.1|1541465_1542149_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYT17067.1|1542145_1542361_-	hypothetical protein	NA	NA	NA	NA	NA
AYT17068.1|1542353_1542737_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
AYT17069.1|1542733_1543036_-	hypothetical protein	NA	NA	NA	NA	NA
AYT17070.1|1543045_1543318_-	hypothetical protein	NA	NA	NA	NA	NA
AYT17071.1|1543606_1544137_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYT17072.1|1544164_1544434_-	hypothetical protein	NA	NA	NA	NA	NA
AYT17073.1|1544436_1545603_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYT17074.1|1545613_1547383_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYT17075.1|1547560_1547992_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
AYT17076.1|1547987_1548980_+	nucleoid-associated protein	NA	A0A291AUQ0	Sinorhizobium_phage	37.3	3.0e-55
AYT17077.1|1549223_1549574_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYT17078.1|1550288_1550939_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYT17079.1|1550935_1551262_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
AYT17080.1|1551261_1551573_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYT17081.1|1551572_1552118_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYT17082.1|1552114_1553710_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYT17083.1|1553709_1555206_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYT17084.1|1555186_1556008_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYT17085.1|1556010_1556469_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYT17086.1|1556683_1557799_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYT17087.1|1557813_1558767_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYT17088.1|1558776_1559115_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17089.1|1559116_1559563_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYT17090.1|1559562_1560027_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYT17091.1|1560023_1560278_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17092.1|1560267_1561695_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYT17093.1|1561694_1562216_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYT17094.1|1562218_1562500_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17095.1|1562597_1562933_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17096.1|1563109_1565575_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYT17097.1|1565574_1566459_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYT17098.1|1566455_1566671_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYT17099.1|1566658_1567813_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYT17100.1|1567809_1568337_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYT17101.1|1568393_1568741_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYT17102.1|1568731_1569835_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYT17103.1|1569827_1570406_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYT17104.1|1571223_1571433_+|tail	phage tail protein	tail	NA	NA	NA	NA
AYT17105.1|1571946_1572564_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYT17106.1|1574074_1574647_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYT17107.1|1574927_1576310_+	amino acid permease	NA	NA	NA	NA	NA
AYT17108.1|1576371_1576707_-	hypothetical protein	NA	NA	NA	NA	NA
AYT17109.1|1576833_1577565_+	two-component response regulator	NA	NA	NA	NA	NA
AYT17110.1|1578045_1579197_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYT17111.1|1579349_1581056_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYT17112.1|1581163_1582468_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYT17113.1|1582543_1583473_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYT17114.1|1583469_1584873_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYT17115.1|1585040_1586687_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYT17116.1|1586886_1588062_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYT17117.1|1588164_1589673_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17118.1|1590378_1591380_+	adenosine deaminase	NA	NA	NA	NA	NA
AYT17119.1|1591453_1592569_-	oxidoreductase	NA	NA	NA	NA	NA
AYT17120.1|1592671_1592827_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17121.1|1593125_1593341_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYT17122.1|1593429_1593870_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17123.1|1593946_1594528_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYT17124.1|1594527_1595106_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYT17125.1|1595098_1597120_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYT17126.1|1597120_1598179_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYT17127.1|1598182_1598803_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYT17128.1|1598805_1599498_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYT17129.1|1599497_1600133_+	endonuclease III	NA	NA	NA	NA	NA
AYT17130.1|1600733_1602239_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYT17131.1|1602343_1602949_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYT17132.1|1603697_1604972_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	1786017	1790429	4775702		Escherichia_phage(50.0%)	6	NA	NA
AYT17316.1|1786017_1786257_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
AYT17317.1|1787129_1787939_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYT17318.1|1788011_1788389_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYT17319.1|1788536_1789079_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYT17320.1|1789270_1789999_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYT17321.1|1790015_1790429_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	2085967	2096474	4775702		Enterobacteria_phage(37.5%)	10	NA	NA
AYT17594.1|2085967_2087281_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYT17595.1|2087307_2088387_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYT17596.1|2088391_2089165_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYT17597.1|2089180_2090155_-	reductase RfbI	NA	NA	NA	NA	NA
AYT17598.1|2090160_2090712_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYT17599.1|2090712_2091591_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYT17600.1|2091638_2092538_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYT17601.1|2092537_2093623_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYT17602.1|2093999_2094893_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYT17603.1|2095070_2096474_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 6
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	2172367	2181535	4775702	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYT17666.1|2172367_2174401_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYT17667.1|2174641_2175100_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYT17668.1|2175271_2175802_+	lipoprotein	NA	NA	NA	NA	NA
AYT17669.1|2175858_2176326_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYT17670.1|2176372_2177092_-	two-component system response regulator	NA	NA	NA	NA	NA
AYT17671.1|2177088_2178771_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	89.7	4.3e-272
AYT17672.1|2178993_2179725_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYT17673.1|2179784_2179892_+	hypothetical protein	NA	NA	NA	NA	NA
AYT17674.1|2179872_2180604_-	ABC transporter permease	NA	NA	NA	NA	NA
AYT17675.1|2180587_2181535_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 7
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	2717051	2730443	4775702	tail	Salmonella_phage(70.0%)	11	NA	NA
AYT18104.1|2717051_2717270_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYT18105.1|2717360_2718461_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT18106.1|2718457_2718943_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT18107.1|2718939_2722017_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
AYT18108.1|2722009_2722129_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT18109.1|2722143_2722446_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT18110.1|2722500_2723016_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT18111.1|2723025_2724198_-|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT18112.1|2724340_2724913_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYT18113.1|2725590_2726706_+	glycosyltransferase	NA	NA	NA	NA	NA
AYT18114.1|2726786_2730443_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 8
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	3061699	3105402	4775702	tRNA,protease,bacteriocin,transposase	Bacillus_virus(33.33%)	44	NA	NA
AYT18419.1|3061699_3062158_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT18420.1|3062347_3063427_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYT18421.1|3063528_3064692_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYT18422.1|3064713_3065760_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYT18423.1|3066133_3066559_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18424.1|3066584_3067163_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18425.1|3067196_3067871_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18426.1|3067852_3068536_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYT18427.1|3068529_3069186_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYT18428.1|3069290_3069749_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT18429.1|3069937_3071929_-	transketolase	NA	NA	NA	NA	NA
AYT18430.1|3072204_3072963_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYT18431.1|3073063_3073984_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYT18432.1|3074211_3076188_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYT18433.1|3076196_3076328_-	hypothetical protein	NA	NA	NA	NA	NA
AYT18434.1|3076622_3076922_-	membrane protein	NA	NA	NA	NA	NA
AYT18435.1|3076977_3078132_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYT18436.1|3078624_3080019_+	galactose-proton symport	NA	NA	NA	NA	NA
AYT18437.1|3080097_3080595_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18438.1|3080690_3081398_+	endonuclease I	NA	NA	NA	NA	NA
AYT18439.1|3081474_3082206_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYT18440.1|3082225_3083173_+	glutathione synthetase	NA	NA	NA	NA	NA
AYT18441.1|3083388_3083952_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18442.1|3083951_3084368_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYT18443.1|3084414_3085101_-	global regulatory protein	NA	NA	NA	NA	NA
AYT18444.1|3085230_3086211_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYT18445.1|3086228_3086933_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18446.1|3086951_3087518_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18447.1|3087514_3087805_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18448.1|3087812_3088406_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYT18449.1|3088398_3089535_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYT18450.1|3089625_3090633_-	hypothetical protein	NA	NA	NA	NA	NA
AYT18451.1|3090765_3091812_-	L-asparaginase	NA	NA	NA	NA	NA
AYT18452.1|3092130_3092589_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT18453.1|3092711_3093431_-	hypothetical protein	NA	NA	NA	NA	NA
AYT18454.1|3093480_3093807_-	hypothetical protein	NA	NA	NA	NA	NA
AYT18455.1|3093806_3094526_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYT18456.1|3094680_3095733_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYT18457.1|3095760_3096036_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYT18458.1|3096148_3097234_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYT18459.1|3097450_3098707_+	nucleoside permease	NA	NA	NA	NA	NA
AYT18460.1|3101317_3102025_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18461.1|3104614_3104881_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYT18462.1|3105123_3105402_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 9
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	3480899	3518957	4775702	plate,tail,portal,transposase,integrase,capsid,terminase	Salmonella_phage(82.05%)	46	3475863:3475877	3488029:3488043
3475863:3475877	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYT18790.1|3480899_3482546_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYT18791.1|3482685_3482784_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYT18792.1|3483039_3483369_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18793.1|3483409_3484462_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYT18794.1|3484857_3485427_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYT18795.1|3485552_3485774_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18796.1|3485806_3486316_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYT18797.1|3486490_3486715_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18798.1|3486737_3487079_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYT18799.1|3487146_3487380_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYT18800.1|3487379_3487607_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYT18801.1|3487603_3488461_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3488029:3488043	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYT18802.1|3488457_3490872_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYT18803.1|3491025_3491214_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYT18804.1|3493181_3494096_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18805.1|3494092_3494833_+	hypothetical protein	NA	NA	NA	NA	NA
AYT18806.1|3494867_3495905_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYT18807.1|3495904_3497671_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYT18808.1|3497813_3498647_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYT18809.1|3498663_3499722_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYT18810.1|3499725_3500376_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYT18811.1|3500408_3500936_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYT18812.1|3500935_3501139_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYT18813.1|3501142_3501358_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYT18814.1|3501377_3501851_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYT18815.1|3501852_3502230_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYT18816.1|3502226_3502655_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYT18817.1|3502750_3503182_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYT18818.1|3503174_3503621_+|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYT18819.1|3503689_3504268_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYT18820.1|3504264_3504624_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYT18821.1|3504610_3505519_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYT18822.1|3505511_3506117_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT18823.1|3506113_3507628_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYT18824.1|3507627_3508221_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYT18825.1|3508192_3508633_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYT18826.1|3509055_3509628_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYT18827.1|3509770_3510943_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT18828.1|3510952_3511468_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT18829.1|3511522_3511825_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT18830.1|3511839_3511959_+	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT18831.1|3511951_3515029_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
AYT18832.1|3515025_3515511_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT18833.1|3515507_3516608_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT18834.1|3516698_3516917_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYT18835.1|3518498_3518957_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 10
CP029899	Salmonella enterica subsp. enterica serovar Typhi strain 343076_241106 chromosome, complete genome	4775702	4434432	4508702	4775702	plate,tail,portal,integrase,capsid,terminase	Salmonella_phage(82.61%)	75	4495946:4495962	4508861:4508877
AYT19612.1|4434432_4436382_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYT19613.1|4436453_4437362_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19614.1|4437435_4438335_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19615.1|4438376_4438736_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19616.1|4438835_4439105_-	hypothetical protein	NA	NA	NA	NA	NA
AYT19617.1|4439236_4440511_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYT19618.1|4440730_4441108_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19619.1|4441194_4441413_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYT19620.1|4441480_4442581_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYT19621.1|4442577_4443063_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYT19622.1|4443062_4445843_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYT19623.1|4445835_4445955_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYT19624.1|4445969_4446272_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYT19625.1|4446326_4446842_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYT19626.1|4446851_4448024_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYT19627.1|4448558_4449281_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYT19628.1|4449478_4449886_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYT19629.1|4449892_4451512_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYT19630.1|4451508_4452114_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT19631.1|4452106_4453015_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AYT19632.1|4453001_4453361_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYT19633.1|4453357_4453936_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYT19634.1|4454004_4454451_-|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYT19635.1|4454443_4454875_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
AYT19636.1|4454970_4455396_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYT19637.1|4455395_4455773_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYT19638.1|4455777_4456248_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYT19639.1|4456267_4456483_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYT19640.1|4456486_4456690_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYT19641.1|4456689_4457154_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYT19642.1|4457247_4457898_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYT19643.1|4457901_4458966_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYT19644.1|4458982_4459816_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYT19645.1|4459958_4461725_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYT19646.1|4461721_4462768_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYT19647.1|4462816_4463512_-	hypothetical protein	NA	NA	NA	NA	NA
AYT19648.1|4463531_4464596_-	hypothetical protein	NA	NA	NA	NA	NA
AYT19649.1|4464592_4465657_-	hypothetical protein	NA	NA	NA	NA	NA
AYT19650.1|4466581_4468990_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
AYT19651.1|4468980_4469841_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYT19652.1|4469837_4470422_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYT19653.1|4470418_4470646_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYT19654.1|4470645_4470879_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYT19655.1|4470946_4471288_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYT19656.1|4471251_4471452_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYT19657.1|4471459_4471969_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYT19658.1|4472001_4472244_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYT19659.1|4472360_4472993_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYT19660.1|4472996_4474022_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYT19661.1|4474128_4474482_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYT19662.1|4475098_4475386_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19663.1|4475396_4476287_+	methyltransferase	NA	NA	NA	NA	NA
AYT19664.1|4476286_4477033_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19665.1|4477334_4479305_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT19666.1|4479324_4480629_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT19667.1|4480651_4481347_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYT19668.1|4481372_4482167_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT19669.1|4482176_4483244_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT19670.1|4483288_4485025_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYT19671.1|4485024_4487520_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT19672.1|4487543_4488590_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYT19673.1|4488592_4489870_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYT19674.1|4490114_4490654_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT19675.1|4491507_4493019_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYT19676.1|4493002_4494592_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19677.1|4494755_4495769_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4495946:4495962	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYT19678.1|4496195_4496489_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19679.1|4496485_4496974_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19680.1|4497153_4497606_-	hypothetical protein	NA	NA	NA	NA	NA
AYT19681.1|4502828_4503290_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19682.1|4503286_4503508_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYT19683.1|4504364_4505147_+	hypothetical protein	NA	NA	NA	NA	NA
AYT19684.1|4505773_4505998_-	hypothetical protein	NA	NA	NA	NA	NA
AYT19685.1|4506127_4507132_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYT19686.1|4507442_4508702_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4508861:4508877	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
