The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	930336	937648	4783891	protease,integrase	Dickeya_phage(16.67%)	6	931587:931601	942766:942780
AYT25032.1|930336_931455_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYT25033.1|931451_933398_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
931587:931601	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYT25034.1|933527_933749_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYT25035.1|934072_934393_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYT25036.1|934423_936700_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYT25037.1|937270_937648_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
942766:942780	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	1008630	1085942	4783891	terminase,integrase,transposase,protease,tail	Salmonella_phage(73.33%)	93	990696:990715	1061303:1061322
990696:990715	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT25087.1|1008630_1009971_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYT25088.1|1009967_1010216_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYT25089.1|1010256_1010502_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYT25090.1|1010501_1011383_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYT25091.1|1011379_1012444_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYT25092.1|1012521_1013202_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYT25093.1|1013198_1013984_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYT25094.1|1013989_1014286_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYT25095.1|1014376_1014577_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYT25096.1|1014865_1015270_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYT25097.1|1015601_1015976_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYT25098.1|1016060_1017044_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYT25099.1|1017046_1017796_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYT25100.1|1017806_1018154_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYT25101.1|1018150_1018675_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYT25102.1|1018674_1019148_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYT25103.1|1019151_1019724_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYT25104.1|1019817_1020084_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYT25105.1|1020165_1020327_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT25106.1|1020759_1021257_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT25107.1|1021441_1021681_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYT25108.1|1021670_1021976_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYT25109.1|1022015_1022618_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYT25110.1|1022826_1023438_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYT25111.1|1023570_1024368_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYT25112.1|1024766_1024892_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT25113.1|1025027_1025477_-	lipoprotein	NA	NA	NA	NA	NA
AYT25114.1|1025693_1026083_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYT25115.1|1026069_1026351_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYT25116.1|1026350_1026965_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYT25117.1|1027183_1027438_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25118.1|1027542_1027920_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYT25119.1|1027983_1028244_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25120.1|1028333_1029086_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYT25121.1|1029051_1030455_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYT25122.1|1030454_1031924_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYT25123.1|1032015_1032546_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYT25124.1|1032560_1033793_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYT25125.1|1033797_1034295_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYT25126.1|1034306_1035248_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYT25127.1|1035289_1035658_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYT25128.1|1035623_1036031_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYT25129.1|1036027_1036582_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYT25130.1|1036568_1036958_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYT25131.1|1036932_1037496_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYT25132.1|1037499_1038645_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYT25133.1|1038656_1039097_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYT25134.1|1039100_1039553_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYT25135.1|1039730_1041683_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYT25136.1|1041682_1042333_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYT25137.1|1042336_1042639_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYT25138.1|1042641_1043673_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYT25139.1|1043669_1044005_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYT25140.1|1044199_1044931_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT25141.1|1044930_1045359_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT25142.1|1045417_1046173_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYT25143.1|1046260_1046398_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYT25144.1|1046413_1046767_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYT25145.1|1046767_1047967_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYT25146.1|1047963_1048644_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYT25147.1|1048643_1050155_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AYT25148.1|1050169_1050688_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYT25149.1|1051609_1052311_-	hypothetical protein	NA	NA	NA	NA	NA
AYT25150.1|1052623_1052902_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYT25151.1|1053327_1055940_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYT25152.1|1056147_1057158_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYT25153.1|1057320_1057866_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25154.1|1057862_1058972_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYT25155.1|1059070_1061179_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYT25156.1|1061191_1063099_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1061303:1061322	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT25157.1|1063113_1064367_+	inner membrane protein	NA	NA	NA	NA	NA
AYT25158.1|1064371_1066012_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYT25159.1|1066008_1066572_+	lipoprotein	NA	NA	NA	NA	NA
AYT25160.1|1066825_1066993_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYT25161.1|1067092_1067611_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYT25162.1|1067679_1069440_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYT25163.1|1069625_1070078_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYT25164.1|1070149_1071202_-	outer membrane protein A	NA	NA	NA	NA	NA
AYT25165.1|1071556_1072066_-	cell division inhibitor	NA	NA	NA	NA	NA
AYT25166.1|1072282_1072888_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYT25167.1|1072874_1075028_-	inner membrane protein	NA	NA	NA	NA	NA
AYT25168.1|1075046_1075493_-	hypothetical protein	NA	NA	NA	NA	NA
AYT25169.1|1075616_1077671_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYT25170.1|1077706_1078165_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYT25171.1|1078259_1078922_-	hypothetical protein	NA	NA	NA	NA	NA
AYT25172.1|1079092_1079509_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25173.1|1079553_1079871_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYT25174.1|1079928_1081140_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYT25175.1|1082271_1082730_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT25176.1|1083466_1083748_+	acylphosphatase	NA	NA	NA	NA	NA
AYT25177.1|1083744_1084074_-	sulfite reductase	NA	NA	NA	NA	NA
AYT25178.1|1084160_1084820_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYT25179.1|1085483_1085942_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	1528760	1602358	4783891	tRNA,transposase,head,protease,plate,tail	Burkholderia_virus(44.12%)	72	NA	NA
AYT25579.1|1528760_1529219_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT25580.1|1529721_1530003_+	stress response protein	NA	NA	NA	NA	NA
AYT25581.1|1530271_1531093_+|protease	serine protease	protease	NA	NA	NA	NA
AYT25582.1|1531127_1531457_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYT25583.1|1531443_1531806_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYT25584.1|1531917_1532088_-	hypothetical protein	NA	NA	NA	NA	NA
AYT25585.1|1532222_1533257_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25586.1|1533431_1534820_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYT25587.1|1534830_1536360_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYT25588.1|1536886_1537831_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25589.1|1538012_1538402_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYT25590.1|1538373_1538826_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYT25591.1|1539020_1539251_-	hypothetical protein	NA	NA	NA	NA	NA
AYT25592.1|1539247_1539931_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYT25593.1|1540515_1540818_-	hypothetical protein	NA	NA	NA	NA	NA
AYT25594.1|1541388_1541919_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYT25595.1|1542218_1543385_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYT25596.1|1543395_1545165_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYT25597.1|1546609_1546960_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYT25598.1|1547674_1548325_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYT25599.1|1548647_1548959_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYT25600.1|1548958_1549504_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYT25601.1|1549500_1551096_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYT25602.1|1551095_1552592_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYT25603.1|1552572_1553394_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYT25604.1|1553396_1553855_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYT25605.1|1554069_1555185_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYT25606.1|1555199_1556153_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYT25607.1|1556162_1556501_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25608.1|1556502_1556949_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYT25609.1|1556948_1557413_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYT25610.1|1557653_1559081_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYT25611.1|1559080_1559602_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYT25612.1|1559604_1559886_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25613.1|1559983_1560319_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25614.1|1560494_1562960_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYT25615.1|1562959_1563844_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYT25616.1|1563840_1564056_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYT25617.1|1564043_1565198_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYT25618.1|1565194_1565722_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYT25619.1|1565778_1566126_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYT25620.1|1566116_1567220_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYT25621.1|1567212_1567791_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYT25622.1|1567793_1568819_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYT25623.1|1569332_1569950_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYT25624.1|1571460_1572033_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYT25625.1|1572313_1573696_+	amino acid permease	NA	NA	NA	NA	NA
AYT25626.1|1573757_1574093_-	hypothetical protein	NA	NA	NA	NA	NA
AYT25627.1|1574219_1574951_+	two-component response regulator	NA	NA	NA	NA	NA
AYT25628.1|1575431_1576583_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYT25629.1|1576735_1578442_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYT25630.1|1578549_1579854_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYT25631.1|1579929_1580859_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYT25632.1|1580855_1582259_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYT25633.1|1582426_1584073_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYT25634.1|1584272_1585448_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYT25635.1|1585550_1587059_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25636.1|1587764_1588766_+	adenosine deaminase	NA	NA	NA	NA	NA
AYT25637.1|1588839_1589955_-	oxidoreductase	NA	NA	NA	NA	NA
AYT25638.1|1590057_1590213_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25639.1|1590511_1590727_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYT25640.1|1590815_1591256_+	hypothetical protein	NA	NA	NA	NA	NA
AYT25641.1|1591332_1591914_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYT25642.1|1591913_1592492_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYT25643.1|1592484_1594506_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYT25644.1|1594506_1595565_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYT25645.1|1595568_1596189_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYT25646.1|1596191_1596884_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYT25647.1|1596883_1597519_+	endonuclease III	NA	NA	NA	NA	NA
AYT25648.1|1598119_1599625_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYT25649.1|1599729_1600335_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYT25650.1|1601083_1602358_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	1783395	1787807	4783891		Escherichia_phage(50.0%)	6	NA	NA
AYT25834.1|1783395_1783635_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
AYT25835.1|1784507_1785317_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYT25836.1|1785389_1785767_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYT25837.1|1785914_1786457_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYT25838.1|1786648_1787377_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYT25839.1|1787393_1787807_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	1991660	1998894	4783891		Morganella_phage(33.33%)	7	NA	NA
AYT26029.1|1991660_1993091_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AYT26030.1|1993164_1993860_-	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AYT26031.1|1993939_1994251_-	hypothetical protein	NA	NA	NA	NA	NA
AYT26032.1|1994901_1996086_+	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AYT26033.1|1996545_1996758_-	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AYT26034.1|1997203_1998472_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AYT26035.1|1998474_1998894_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	2105195	2115702	4783891		Enterobacteria_phage(37.5%)	10	NA	NA
AYT26132.1|2105195_2106509_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYT26133.1|2106535_2107615_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYT26134.1|2107619_2108393_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYT26135.1|2108408_2109383_-	reductase RfbI	NA	NA	NA	NA	NA
AYT26136.1|2109388_2109940_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYT26137.1|2109940_2110819_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYT26138.1|2110866_2111766_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYT26139.1|2111765_2112851_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYT26140.1|2113227_2114121_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYT26141.1|2114298_2115702_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 7
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	2192931	2202102	4783891	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYT26201.1|2192931_2194965_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYT26202.1|2195205_2195664_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYT26203.1|2195835_2196366_+	lipoprotein	NA	NA	NA	NA	NA
AYT26204.1|2196422_2196890_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYT26205.1|2196936_2197656_-	two-component system response regulator	NA	NA	NA	NA	NA
AYT26206.1|2197652_2199338_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYT26207.1|2199560_2200292_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYT26208.1|2200351_2200459_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26209.1|2200439_2201171_-	ABC transporter permease	NA	NA	NA	NA	NA
AYT26210.1|2201154_2202102_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 8
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	2737538	2750930	4783891	tail	Salmonella_phage(70.0%)	11	NA	NA
AYT26639.1|2737538_2737757_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYT26640.1|2737847_2738948_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT26641.1|2738944_2739430_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT26642.1|2739426_2742504_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYT26643.1|2742496_2742616_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT26644.1|2742630_2742933_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT26645.1|2742987_2743503_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT26646.1|2743512_2744685_-|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT26647.1|2744827_2745400_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYT26648.1|2746077_2747193_+	glycosyltransferase	NA	NA	NA	NA	NA
AYT26649.1|2747273_2750930_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 9
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	3068433	3112136	4783891	bacteriocin,protease,tRNA,transposase	Bacillus_virus(33.33%)	44	NA	NA
AYT26937.1|3068433_3068892_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT26938.1|3069081_3070161_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYT26939.1|3070262_3071426_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYT26940.1|3071447_3072494_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYT26941.1|3072867_3073293_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26942.1|3073318_3073897_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26943.1|3073930_3074605_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26944.1|3074586_3075270_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYT26945.1|3075263_3075920_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYT26946.1|3076024_3076483_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT26947.1|3076671_3078663_-	transketolase	NA	NA	NA	NA	NA
AYT26948.1|3078938_3079697_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYT26949.1|3079797_3080718_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYT26950.1|3080945_3082922_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYT26951.1|3082930_3083062_-	hypothetical protein	NA	NA	NA	NA	NA
AYT26952.1|3083356_3083656_-	membrane protein	NA	NA	NA	NA	NA
AYT26953.1|3083711_3084866_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYT26954.1|3085358_3086753_+	galactose-proton symport	NA	NA	NA	NA	NA
AYT26955.1|3086831_3087329_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26956.1|3087424_3088132_+	endonuclease I	NA	NA	NA	NA	NA
AYT26957.1|3088208_3088940_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYT26958.1|3088959_3089907_+	glutathione synthetase	NA	NA	NA	NA	NA
AYT26959.1|3090122_3090686_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26960.1|3090685_3091102_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYT26961.1|3091148_3091835_-	global regulatory protein	NA	NA	NA	NA	NA
AYT26962.1|3091964_3092945_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYT26963.1|3092962_3093667_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26964.1|3093685_3094252_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26965.1|3094248_3094539_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26966.1|3094546_3095140_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYT26967.1|3095132_3096269_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYT26968.1|3096359_3097367_-	hypothetical protein	NA	NA	NA	NA	NA
AYT26969.1|3097499_3098546_-	L-asparaginase	NA	NA	NA	NA	NA
AYT26970.1|3098864_3099323_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT26971.1|3099445_3100165_-	hypothetical protein	NA	NA	NA	NA	NA
AYT26972.1|3100214_3100541_-	hypothetical protein	NA	NA	NA	NA	NA
AYT26973.1|3100540_3101260_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYT26974.1|3101414_3102467_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYT26975.1|3102494_3102770_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYT26976.1|3102882_3103968_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYT26977.1|3104184_3105441_+	nucleoside permease	NA	NA	NA	NA	NA
AYT26978.1|3108051_3108759_+	hypothetical protein	NA	NA	NA	NA	NA
AYT26979.1|3111348_3111615_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYT26980.1|3111857_3112136_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 10
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	3490055	3528113	4783891	terminase,portal,capsid,integrase,transposase,plate,tail	Salmonella_phage(82.05%)	46	3485019:3485033	3497185:3497199
3485019:3485033	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYT27308.1|3490055_3491702_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYT27309.1|3491841_3491940_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYT27310.1|3492195_3492525_+	hypothetical protein	NA	NA	NA	NA	NA
AYT27311.1|3492565_3493618_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYT27312.1|3494013_3494583_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYT27313.1|3494708_3494930_+	hypothetical protein	NA	NA	NA	NA	NA
AYT27314.1|3494962_3495472_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYT27315.1|3495646_3495871_+	hypothetical protein	NA	NA	NA	NA	NA
AYT27316.1|3495893_3496235_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYT27317.1|3496302_3496536_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYT27318.1|3496535_3496763_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYT27319.1|3496759_3497617_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3497185:3497199	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYT27320.1|3497613_3500028_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYT27321.1|3500181_3500370_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYT27322.1|3502337_3503252_+	hypothetical protein	NA	NA	NA	NA	NA
AYT27323.1|3503248_3503989_+	hypothetical protein	NA	NA	NA	NA	NA
AYT27324.1|3504023_3505061_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYT27325.1|3505060_3506827_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYT27326.1|3506969_3507803_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYT27327.1|3507819_3508878_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYT27328.1|3508881_3509532_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYT27329.1|3509564_3510092_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYT27330.1|3510091_3510295_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYT27331.1|3510298_3510514_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYT27332.1|3510533_3511007_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYT27333.1|3511008_3511386_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYT27334.1|3511382_3511811_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYT27335.1|3511906_3512338_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYT27336.1|3512330_3512777_+|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYT27337.1|3512845_3513424_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYT27338.1|3513420_3513780_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYT27339.1|3513766_3514675_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYT27340.1|3514667_3515273_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT27341.1|3515269_3516784_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYT27342.1|3516783_3517377_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYT27343.1|3517348_3517789_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYT27344.1|3518211_3518784_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYT27345.1|3518926_3520099_+|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT27346.1|3520108_3520624_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT27347.1|3520678_3520981_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT27348.1|3520995_3521115_+	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT27349.1|3521107_3524185_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYT27350.1|3524181_3524667_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT27351.1|3524663_3525764_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT27352.1|3525854_3526073_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYT27353.1|3527654_3528113_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 11
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	4443643	4517807	4783891	terminase,tail,portal,capsid,integrase,plate	Salmonella_phage(82.98%)	76	4505144:4505160	4517966:4517982
AYT28124.1|4443643_4445593_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYT28125.1|4445664_4446573_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28126.1|4446646_4447546_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28127.1|4447587_4447947_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28128.1|4448046_4448316_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28129.1|4448447_4449722_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYT28130.1|4449941_4450319_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28131.1|4450405_4450624_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYT28132.1|4450691_4451792_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYT28133.1|4451788_4452274_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYT28134.1|4452273_4455054_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYT28135.1|4455046_4455166_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYT28136.1|4455180_4455483_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYT28137.1|4455537_4456053_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYT28138.1|4456062_4457235_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYT28139.1|4457769_4458492_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYT28140.1|4458689_4459097_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYT28141.1|4459103_4460723_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYT28142.1|4460719_4461325_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT28143.1|4461317_4462226_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AYT28144.1|4462212_4462572_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYT28145.1|4462568_4463147_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYT28146.1|4463215_4463662_-|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYT28147.1|4463654_4464086_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AYT28148.1|4464181_4464607_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYT28149.1|4464606_4464984_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYT28150.1|4464988_4465459_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYT28151.1|4465478_4465694_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYT28152.1|4465697_4465901_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYT28153.1|4465900_4466365_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYT28154.1|4466458_4467109_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYT28155.1|4467112_4468177_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYT28156.1|4468193_4469027_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYT28157.1|4469169_4470936_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYT28158.1|4470932_4471979_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYT28159.1|4472027_4472723_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28160.1|4472742_4473807_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28161.1|4473803_4474868_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28162.1|4475792_4476122_-	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	90.8	6.2e-50
AYT28163.1|4476118_4478188_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.9	0.0e+00
AYT28164.1|4478178_4479039_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYT28165.1|4479035_4479620_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYT28166.1|4479616_4479844_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYT28167.1|4479843_4480077_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYT28168.1|4480144_4480486_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYT28169.1|4480449_4480650_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYT28170.1|4480657_4481167_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYT28171.1|4481199_4481442_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYT28172.1|4481558_4482191_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYT28173.1|4482194_4483220_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYT28174.1|4483326_4483680_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYT28175.1|4484296_4484584_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28176.1|4484594_4485485_+	methyltransferase	NA	NA	NA	NA	NA
AYT28177.1|4485484_4486231_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28178.1|4486532_4488503_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT28179.1|4488522_4489827_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT28180.1|4489849_4490545_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYT28181.1|4490570_4491365_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT28182.1|4491374_4492442_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT28183.1|4492486_4494223_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYT28184.1|4494222_4496718_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT28185.1|4496741_4497788_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYT28186.1|4497790_4499068_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYT28187.1|4499312_4499852_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT28188.1|4500705_4502217_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYT28189.1|4502200_4503790_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28190.1|4503953_4504967_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4505144:4505160	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYT28191.1|4505393_4505687_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28192.1|4505683_4506172_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28193.1|4506351_4506804_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28194.1|4512026_4512488_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28195.1|4512484_4512706_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYT28196.1|4513562_4514345_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28197.1|4514971_4515196_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28198.1|4515325_4516237_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28199.1|4516547_4517807_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4517966:4517982	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 12
CP029913	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 chromosome, complete genome	4783891	4660059	4670318	4783891	capsid	Enterobacteria_phage(77.78%)	13	NA	NA
AYT28336.1|4660059_4661136_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYT28337.1|4661132_4662206_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYT28338.1|4662180_4663344_-	hypothetical protein	NA	NA	NA	NA	NA
AYT28339.1|4663619_4664186_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYT28340.1|4664201_4664441_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYT28341.1|4664444_4665305_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYT28342.1|4665727_4666051_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYT28343.1|4666034_4666535_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
AYT28344.1|4666531_4666759_+	hypothetical protein	NA	NA	NA	NA	NA
AYT28345.1|4666755_4667076_+	P4 phage protein	NA	NA	NA	NA	NA
AYT28346.1|4667090_4667765_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	75.1	1.4e-85
AYT28347.1|4667761_4669423_+	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	90.2	1.9e-296
AYT28348.1|4670159_4670318_+	recombinase	NA	Q7M297	Enterobacteria_phage	57.4	3.9e-10
>prophage 1
CP029912	Salmonella enterica subsp. enterica serovar Typhi strain 343076_249107 plasmid pK91, complete sequence	91848	2968	79021	91848	protease,transposase	Escherichia_phage(28.12%)	76	NA	NA
AYT24149.1|2968_4045_+|transposase	transposase of ISEc21	transposase	NA	NA	NA	NA
AYT24150.1|4447_6538_-|protease	Lon protease	protease	NA	NA	NA	NA
AYT24151.1|6554_9212_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24152.1|9211_12841_-	Type I restriction-modification system methyltransferase subunit	NA	NA	NA	NA	NA
AYT24153.1|12856_14620_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24154.1|14636_18314_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24155.1|18332_18917_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24156.1|18913_19513_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24157.1|19522_20410_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24158.1|20517_20928_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24159.1|21269_21947_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	43.2	2.2e-41
AYT24160.1|23049_23445_+|transposase	transposase	transposase	Q76S41	Shigella_phage	75.4	1.4e-43
AYT24161.1|23447_24284_+|transposase	transposase InsF for insertion sequence IS3A/B/C/D/E/fA	transposase	Q9ZXG3	Shigella_phage	62.7	4.3e-95
AYT24162.1|24280_24625_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24163.1|25137_26856_-	histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.8	2.1e-27
AYT24164.1|26852_27341_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24165.1|27333_28317_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24166.1|28320_29235_-	response regulator receiver protein	NA	NA	NA	NA	NA
AYT24167.1|29548_29857_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24168.1|29849_30065_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24169.1|30067_30730_+	type IV secretory pathway VirB1 component	NA	NA	NA	NA	NA
AYT24170.1|30740_31040_+	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
AYT24171.1|31049_33800_+	ATPase	NA	NA	NA	NA	NA
AYT24172.1|33818_34535_+	TriD protein	NA	NA	NA	NA	NA
AYT24173.1|34546_34831_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24174.1|34848_35856_+	TriE protein	NA	NA	NA	NA	NA
AYT24175.1|36065_36752_+	TriG protein	NA	NA	NA	NA	NA
AYT24176.1|36744_37638_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
AYT24177.1|37634_38831_+	TriI protein	NA	NA	NA	NA	NA
AYT24178.1|38834_39884_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA	NA
AYT24179.1|39870_40272_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24180.1|40362_40680_+	killer protein	NA	NA	NA	NA	NA
AYT24181.1|40706_41042_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24182.1|41017_41326_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24183.1|41322_43524_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AYT24184.1|43520_43913_+	DNA binding protein	NA	NA	NA	NA	NA
AYT24185.1|44621_46529_+	type IV conjugative transfer system protein TraD	NA	NA	NA	NA	NA
AYT24186.1|46543_47290_+	mobilization protein	NA	NA	NA	NA	NA
AYT24187.1|47282_47810_+	Endonuclease	NA	A0A1B2LRT6	Wolbachia_phage	39.5	2.8e-20
AYT24188.1|47841_48273_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24189.1|48752_49718_-	DNA primase TraC	NA	A0A1V0EEV1	Caulobacter_phage	42.7	1.3e-58
AYT24190.1|50169_50595_+	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	50.4	2.9e-31
AYT24191.1|50594_51866_+	protein UmuC	NA	F1C5A5	Cronobacter_phage	63.7	5.6e-155
AYT24192.1|51926_52196_+	Orf44	NA	NA	NA	NA	NA
AYT24193.1|52249_52555_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24194.1|53201_54176_-	plasmid partitioning protein	NA	I3WF22	Macacine_betaherpesvirus	89.7	1.7e-156
AYT24195.1|54172_55348_-	plasmid partition protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.4	2.8e-225
AYT24196.1|56067_57090_+	hypothetical protein	NA	J9Q7H0	Salmonella_phage	53.9	6.8e-87
AYT24197.1|57255_57717_-	hypothetical protein	NA	A0A1B0V7H9	Salmonella_phage	57.1	5.9e-38
AYT24198.1|57847_59047_-|transposase	IS1294 transposase	transposase	NA	NA	NA	NA
AYT24199.1|59259_59973_-|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	86.5	2.6e-109
AYT24200.1|60170_60461_+	hypothetical protein	NA	A0A077SK55	Escherichia_phage	87.3	1.8e-32
AYT24201.1|60530_60797_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24202.1|60799_61048_+	DNA polymerase III subunit theta	NA	Q71T70	Escherichia_phage	85.4	2.8e-31
AYT24203.1|61156_61552_+	DNA polymerase V subunit	NA	Q1MVE7	Enterobacteria_phage	76.2	2.1e-52
AYT24204.1|61624_61846_+	antitoxin of P1 addiction system	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
AYT24205.1|61845_62226_+	death on curing protein	NA	Q71T66	Escherichia_phage	90.3	1.8e-56
AYT24206.1|62309_63110_-	hypothetical protein	NA	A0A222YXM9	Escherichia_phage	71.1	9.4e-92
AYT24207.1|63123_63618_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A222YYP1	Escherichia_phage	88.4	1.5e-79
AYT24208.1|63610_64102_-	hypothetical protein	NA	NA	NA	NA	NA
AYT24209.1|64098_64353_-	hypothetical protein	NA	Q5QBE7	Escherichia_phage	75.0	2.1e-29
AYT24210.1|64515_65544_-	site-specific tyrosine recombinase XerC	NA	Q5XLQ5	Enterobacteria_phage	42.1	1.1e-60
AYT24211.1|65941_66979_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24212.1|67006_67834_-	replication initiator protein	NA	Q71T61	Escherichia_phage	50.4	8.0e-62
AYT24213.1|67806_68529_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	3.2e-139
AYT24214.1|68635_69226_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24215.1|69362_69935_+	resolvase-like protein	NA	M9Q1K0	Clostridium_phage	39.4	3.4e-19
AYT24216.1|69968_71363_+	hypothetical protein	NA	NA	NA	NA	NA
AYT24217.1|71386_71824_+	resolvase protein	NA	A0A219YB42	Aeromonas_phage	43.8	5.2e-20
AYT24218.1|72142_72799_-	quinolone resistance protein	NA	NA	NA	NA	NA
AYT24219.1|73166_73358_+|transposase	IS2 transposase	transposase	Q76S41	Shigella_phage	72.2	3.2e-14
AYT24220.1|73367_73562_+|transposase	transposase	transposase	Q76S41	Shigella_phage	82.8	2.7e-21
AYT24221.1|73690_74227_+	IS2 resolvase	NA	Q9ZXG3	Shigella_phage	69.7	1.2e-69
AYT24222.1|74251_77257_-|transposase	transposase	transposase	Q1MVP5	Enterobacteria_phage	100.0	0.0e+00
AYT24223.1|77420_77978_+	TnpR	NA	Q1MVP4	Enterobacteria_phage	100.0	7.0e-94
AYT24224.1|78160_79021_+	beta-lactamase	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
