The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	930221	937533	4782825	integrase,protease	Dickeya_phage(16.67%)	6	931472:931486	942651:942665
AYT46552.1|930221_931340_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYT46553.1|931336_933283_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
931472:931486	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYT46554.1|933412_933634_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYT46555.1|933957_934278_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYT46556.1|934308_936585_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYT46557.1|937155_937533_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
942651:942665	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	1008485	1085797	4782825	integrase,tail,terminase,transposase,protease	Salmonella_phage(73.33%)	93	990551:990570	1061158:1061177
990551:990570	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT46607.1|1008485_1009826_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYT46608.1|1009822_1010071_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYT46609.1|1010111_1010357_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYT46610.1|1010356_1011238_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYT46611.1|1011234_1012299_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYT46612.1|1012376_1013057_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYT46613.1|1013053_1013839_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYT46614.1|1013844_1014141_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYT46615.1|1014231_1014432_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYT46616.1|1014720_1015125_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYT46617.1|1015456_1015831_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYT46618.1|1015915_1016899_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYT46619.1|1016901_1017651_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYT46620.1|1017661_1018009_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYT46621.1|1018005_1018530_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYT46622.1|1018529_1019003_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYT46623.1|1019006_1019579_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYT46624.1|1019672_1019939_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYT46625.1|1020020_1020182_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT46626.1|1020614_1021112_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT46627.1|1021296_1021536_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYT46628.1|1021525_1021831_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYT46629.1|1021870_1022473_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYT46630.1|1022681_1023293_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYT46631.1|1023425_1024223_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYT46632.1|1024621_1024747_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT46633.1|1024882_1025332_-	lipoprotein	NA	NA	NA	NA	NA
AYT46634.1|1025548_1025938_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYT46635.1|1025924_1026206_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYT46636.1|1026205_1026820_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYT46637.1|1027038_1027293_+	hypothetical protein	NA	NA	NA	NA	NA
AYT46638.1|1027397_1027775_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYT46639.1|1027838_1028099_+	hypothetical protein	NA	NA	NA	NA	NA
AYT46640.1|1028188_1028941_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYT46641.1|1028906_1030310_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYT46642.1|1030309_1031779_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYT46643.1|1031870_1032401_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYT46644.1|1032415_1033648_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYT46645.1|1033652_1034150_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYT46646.1|1034161_1035103_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYT46647.1|1035144_1035513_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYT46648.1|1035478_1035886_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYT46649.1|1035882_1036437_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYT46650.1|1036423_1036813_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYT46651.1|1036787_1037351_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYT46652.1|1037354_1038500_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYT46653.1|1038511_1038952_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYT46654.1|1038955_1039408_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYT46655.1|1039585_1041538_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYT46656.1|1041537_1042188_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYT46657.1|1042191_1042494_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYT46658.1|1042496_1043528_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYT46659.1|1043524_1043860_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYT46660.1|1044054_1044786_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT46661.1|1044785_1045214_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT46662.1|1045272_1046028_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYT46663.1|1046115_1046253_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYT46664.1|1046268_1046622_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYT46665.1|1046622_1047822_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYT46666.1|1047818_1048499_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYT46667.1|1048498_1050010_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AYT46668.1|1050024_1050543_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYT46669.1|1051464_1052166_-	hypothetical protein	NA	NA	NA	NA	NA
AYT46670.1|1052478_1052757_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYT46671.1|1053182_1055795_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYT46672.1|1056002_1057013_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYT46673.1|1057175_1057721_+	hypothetical protein	NA	NA	NA	NA	NA
AYT46674.1|1057717_1058827_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYT46675.1|1058925_1061034_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYT46676.1|1061046_1062954_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1061158:1061177	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT46677.1|1062968_1064222_+	inner membrane protein	NA	NA	NA	NA	NA
AYT46678.1|1064226_1065867_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYT46679.1|1065863_1066427_+	lipoprotein	NA	NA	NA	NA	NA
AYT46680.1|1066680_1066848_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYT46681.1|1066947_1067466_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYT46682.1|1067534_1069295_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYT46683.1|1069480_1069933_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYT46684.1|1070004_1071057_-	outer membrane protein A	NA	NA	NA	NA	NA
AYT46685.1|1071411_1071921_-	cell division inhibitor	NA	NA	NA	NA	NA
AYT46686.1|1072137_1072743_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYT46687.1|1072729_1074883_-	inner membrane protein	NA	NA	NA	NA	NA
AYT46688.1|1074901_1075348_-	hypothetical protein	NA	NA	NA	NA	NA
AYT46689.1|1075471_1077526_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYT46690.1|1077561_1078020_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYT46691.1|1078114_1078777_-	hypothetical protein	NA	NA	NA	NA	NA
AYT46692.1|1078947_1079364_+	hypothetical protein	NA	NA	NA	NA	NA
AYT46693.1|1079408_1079726_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYT46694.1|1079783_1080995_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYT46695.1|1082126_1082585_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT46696.1|1083321_1083603_+	acylphosphatase	NA	NA	NA	NA	NA
AYT46697.1|1083599_1083929_-	sulfite reductase	NA	NA	NA	NA	NA
AYT46698.1|1084015_1084675_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYT46699.1|1085338_1085797_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	1528623	1602221	4782825	tail,transposase,protease,plate,tRNA,head	Burkholderia_virus(44.12%)	72	NA	NA
AYT47099.1|1528623_1529082_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT47100.1|1529584_1529866_+	stress response protein	NA	NA	NA	NA	NA
AYT47101.1|1530134_1530956_+|protease	serine protease	protease	NA	NA	NA	NA
AYT47102.1|1530990_1531320_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYT47103.1|1531306_1531669_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYT47104.1|1531780_1531951_-	hypothetical protein	NA	NA	NA	NA	NA
AYT47105.1|1532085_1533120_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47106.1|1533294_1534683_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYT47107.1|1534693_1536223_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYT47108.1|1536749_1537694_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47109.1|1537875_1538265_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYT47110.1|1538236_1538689_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYT47111.1|1538883_1539114_-	hypothetical protein	NA	NA	NA	NA	NA
AYT47112.1|1539110_1539794_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYT47113.1|1540378_1540681_-	hypothetical protein	NA	NA	NA	NA	NA
AYT47114.1|1541251_1541782_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYT47115.1|1542081_1543248_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYT47116.1|1543258_1545028_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.3	1.4e-228
AYT47117.1|1546472_1546823_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYT47118.1|1547537_1548188_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYT47119.1|1548510_1548822_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYT47120.1|1548821_1549367_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYT47121.1|1549363_1550959_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYT47122.1|1550958_1552455_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYT47123.1|1552435_1553257_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYT47124.1|1553259_1553718_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYT47125.1|1553932_1555048_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYT47126.1|1555062_1556016_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYT47127.1|1556025_1556364_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47128.1|1556365_1556812_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYT47129.1|1556811_1557276_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYT47130.1|1557516_1558944_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYT47131.1|1558943_1559465_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYT47132.1|1559467_1559749_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47133.1|1559846_1560182_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47134.1|1560357_1562823_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYT47135.1|1562822_1563707_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYT47136.1|1563703_1563919_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYT47137.1|1563906_1565061_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYT47138.1|1565057_1565585_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYT47139.1|1565641_1565989_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYT47140.1|1565979_1567083_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYT47141.1|1567075_1567654_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYT47142.1|1567656_1568682_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYT47143.1|1569195_1569813_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYT47144.1|1571323_1571896_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYT47145.1|1572176_1573559_+	amino acid permease	NA	NA	NA	NA	NA
AYT47146.1|1573620_1573956_-	hypothetical protein	NA	NA	NA	NA	NA
AYT47147.1|1574082_1574814_+	two-component response regulator	NA	NA	NA	NA	NA
AYT47148.1|1575294_1576446_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYT47149.1|1576598_1578305_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYT47150.1|1578412_1579717_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYT47151.1|1579792_1580722_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYT47152.1|1580718_1582122_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYT47153.1|1582289_1583936_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYT47154.1|1584135_1585311_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYT47155.1|1585413_1586922_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47156.1|1587627_1588629_+	adenosine deaminase	NA	NA	NA	NA	NA
AYT47157.1|1588702_1589818_-	oxidoreductase	NA	NA	NA	NA	NA
AYT47158.1|1589920_1590076_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47159.1|1590374_1590590_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYT47160.1|1590678_1591119_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47161.1|1591195_1591777_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYT47162.1|1591776_1592355_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYT47163.1|1592347_1594369_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYT47164.1|1594369_1595428_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYT47165.1|1595431_1596052_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYT47166.1|1596054_1596747_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYT47167.1|1596746_1597382_+	endonuclease III	NA	NA	NA	NA	NA
AYT47168.1|1597982_1599488_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYT47169.1|1599592_1600198_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYT47170.1|1600946_1602221_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	1783258	1787670	4782825		Escherichia_phage(50.0%)	6	NA	NA
AYT47354.1|1783258_1783498_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
AYT47355.1|1784370_1785180_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYT47356.1|1785252_1785630_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYT47357.1|1785777_1786320_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYT47358.1|1786511_1787240_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYT47359.1|1787256_1787670_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	1991523	1998757	4782825		Morganella_phage(33.33%)	7	NA	NA
AYT47549.1|1991523_1992954_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AYT47550.1|1993027_1993723_-	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AYT47551.1|1993802_1994114_-	hypothetical protein	NA	NA	NA	NA	NA
AYT47552.1|1994764_1995949_+	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AYT47553.1|1996408_1996621_-	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AYT47554.1|1997066_1998335_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AYT47555.1|1998337_1998757_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	2105058	2115565	4782825		Enterobacteria_phage(37.5%)	10	NA	NA
AYT47652.1|2105058_2106372_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYT47653.1|2106398_2107478_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYT47654.1|2107482_2108256_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYT47655.1|2108271_2109246_-	reductase RfbI	NA	NA	NA	NA	NA
AYT47656.1|2109251_2109803_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYT47657.1|2109803_2110682_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYT47658.1|2110729_2111629_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYT47659.1|2111628_2112714_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYT47660.1|2113090_2113984_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYT47661.1|2114161_2115565_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 7
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	2192794	2201965	4782825	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYT47721.1|2192794_2194828_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYT47722.1|2195068_2195527_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYT47723.1|2195698_2196229_+	lipoprotein	NA	NA	NA	NA	NA
AYT47724.1|2196285_2196753_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYT47725.1|2196799_2197519_-	two-component system response regulator	NA	NA	NA	NA	NA
AYT47726.1|2197515_2199201_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYT47727.1|2199423_2200155_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYT47728.1|2200214_2200322_+	hypothetical protein	NA	NA	NA	NA	NA
AYT47729.1|2200302_2201034_-	ABC transporter permease	NA	NA	NA	NA	NA
AYT47730.1|2201017_2201965_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 8
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	2737281	2750673	4782825	tail	Salmonella_phage(70.0%)	11	NA	NA
AYT48159.1|2737281_2737500_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYT48160.1|2737590_2738691_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT48161.1|2738687_2739173_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT48162.1|2739169_2742247_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYT48163.1|2742239_2742359_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT48164.1|2742373_2742676_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT48165.1|2742730_2743246_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT48166.1|2743255_2744428_-|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT48167.1|2744570_2745143_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYT48168.1|2745820_2746936_+	glycosyltransferase	NA	NA	NA	NA	NA
AYT48169.1|2747016_2750673_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 9
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	3067434	3111137	4782825	tRNA,bacteriocin,protease,transposase	Bacillus_virus(33.33%)	44	NA	NA
AYT48457.1|3067434_3067893_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT48458.1|3068082_3069162_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYT48459.1|3069263_3070427_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYT48460.1|3070448_3071495_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYT48461.1|3071868_3072294_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48462.1|3072319_3072898_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48463.1|3072931_3073606_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48464.1|3073587_3074271_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYT48465.1|3074264_3074921_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYT48466.1|3075025_3075484_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT48467.1|3075672_3077664_-	transketolase	NA	NA	NA	NA	NA
AYT48468.1|3077939_3078698_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYT48469.1|3078798_3079719_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYT48470.1|3079946_3081923_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYT48471.1|3081931_3082063_-	hypothetical protein	NA	NA	NA	NA	NA
AYT48472.1|3082357_3082657_-	membrane protein	NA	NA	NA	NA	NA
AYT48473.1|3082712_3083867_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYT48474.1|3084359_3085754_+	galactose-proton symport	NA	NA	NA	NA	NA
AYT48475.1|3085832_3086330_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48476.1|3086425_3087133_+	endonuclease I	NA	NA	NA	NA	NA
AYT48477.1|3087209_3087941_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYT48478.1|3087960_3088908_+	glutathione synthetase	NA	NA	NA	NA	NA
AYT48479.1|3089123_3089687_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48480.1|3089686_3090103_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYT48481.1|3090149_3090836_-	global regulatory protein	NA	NA	NA	NA	NA
AYT48482.1|3090965_3091946_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYT48483.1|3091963_3092668_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48484.1|3092686_3093253_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48485.1|3093249_3093540_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48486.1|3093547_3094141_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYT48487.1|3094133_3095270_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYT48488.1|3095360_3096368_-	hypothetical protein	NA	NA	NA	NA	NA
AYT48489.1|3096500_3097547_-	L-asparaginase	NA	NA	NA	NA	NA
AYT48490.1|3097865_3098324_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT48491.1|3098446_3099166_-	hypothetical protein	NA	NA	NA	NA	NA
AYT48492.1|3099215_3099542_-	hypothetical protein	NA	NA	NA	NA	NA
AYT48493.1|3099541_3100261_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYT48494.1|3100415_3101468_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYT48495.1|3101495_3101771_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYT48496.1|3101883_3102969_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYT48497.1|3103185_3104442_+	nucleoside permease	NA	NA	NA	NA	NA
AYT48498.1|3107052_3107760_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48499.1|3110349_3110616_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYT48500.1|3110858_3111137_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 10
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	3488456	3526514	4782825	integrase,tail,terminase,transposase,portal,plate,capsid	Salmonella_phage(82.05%)	46	3483420:3483434	3495586:3495600
3483420:3483434	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYT48828.1|3488456_3490103_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYT48829.1|3490242_3490341_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYT48830.1|3490596_3490926_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48831.1|3490966_3492019_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYT48832.1|3492414_3492984_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYT48833.1|3493109_3493331_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48834.1|3493363_3493873_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYT48835.1|3494047_3494272_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48836.1|3494294_3494636_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYT48837.1|3494703_3494937_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYT48838.1|3494936_3495164_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYT48839.1|3495160_3496018_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3495586:3495600	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYT48840.1|3496014_3498429_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYT48841.1|3498582_3498771_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYT48842.1|3500738_3501653_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48843.1|3501649_3502390_+	hypothetical protein	NA	NA	NA	NA	NA
AYT48844.1|3502424_3503462_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYT48845.1|3503461_3505228_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYT48846.1|3505370_3506204_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYT48847.1|3506220_3507279_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYT48848.1|3507282_3507933_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYT48849.1|3507965_3508493_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYT48850.1|3508492_3508696_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYT48851.1|3508699_3508915_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYT48852.1|3508934_3509408_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYT48853.1|3509409_3509787_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYT48854.1|3509783_3510212_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYT48855.1|3510307_3510739_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYT48856.1|3510731_3511178_+|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYT48857.1|3511246_3511825_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYT48858.1|3511821_3512181_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYT48859.1|3512167_3513076_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYT48860.1|3513068_3513674_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT48861.1|3513670_3515185_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYT48862.1|3515184_3515778_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYT48863.1|3515749_3516190_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYT48864.1|3516612_3517185_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYT48865.1|3517327_3518500_+|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT48866.1|3518509_3519025_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT48867.1|3519079_3519382_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT48868.1|3519396_3519516_+	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT48869.1|3519508_3522586_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYT48870.1|3522582_3523068_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT48871.1|3523064_3524165_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT48872.1|3524255_3524474_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYT48873.1|3526055_3526514_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 11
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	4442397	4516747	4782825	integrase,tail,terminase,portal,plate,capsid	Salmonella_phage(82.98%)	76	4503898:4503914	4516906:4516922
AYT49644.1|4442397_4444347_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYT49645.1|4444418_4445327_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49646.1|4445400_4446300_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49647.1|4446341_4446701_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49648.1|4446800_4447070_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49649.1|4447201_4448476_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYT49650.1|4448695_4449073_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49651.1|4449159_4449378_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYT49652.1|4449445_4450546_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYT49653.1|4450542_4451028_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYT49654.1|4451027_4453808_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYT49655.1|4453800_4453920_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYT49656.1|4453934_4454237_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYT49657.1|4454291_4454807_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYT49658.1|4454816_4455989_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYT49659.1|4456523_4457246_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYT49660.1|4457443_4457851_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYT49661.1|4457857_4459477_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYT49662.1|4459473_4460079_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT49663.1|4460071_4460980_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AYT49664.1|4460966_4461326_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYT49665.1|4461322_4461901_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYT49666.1|4461969_4462416_-|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYT49667.1|4462408_4462840_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AYT49668.1|4462935_4463361_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYT49669.1|4463360_4463738_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYT49670.1|4463742_4464213_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYT49671.1|4464232_4464448_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYT49672.1|4464451_4464655_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYT49673.1|4464654_4465119_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYT49674.1|4465212_4465863_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYT49675.1|4465866_4466931_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYT49676.1|4466947_4467781_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYT49677.1|4467923_4469690_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYT49678.1|4469686_4470733_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYT49679.1|4470781_4471477_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49680.1|4471496_4472561_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49681.1|4472557_4473622_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49682.1|4474546_4474876_-	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	90.8	6.2e-50
AYT49683.1|4474872_4476942_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.9	0.0e+00
AYT49684.1|4476932_4477793_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYT49685.1|4477789_4478374_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYT49686.1|4478370_4478598_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYT49687.1|4478597_4478831_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYT49688.1|4478898_4479240_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYT49689.1|4479203_4479404_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYT49690.1|4479411_4479921_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYT49691.1|4479953_4480196_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYT49692.1|4480312_4480945_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYT49693.1|4480948_4481974_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYT49694.1|4482080_4482434_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYT49695.1|4483050_4483338_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49696.1|4483348_4484239_+	methyltransferase	NA	NA	NA	NA	NA
AYT49697.1|4484238_4484985_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49698.1|4485286_4487257_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT49699.1|4487276_4488581_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT49700.1|4488603_4489299_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYT49701.1|4489324_4490119_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT49702.1|4490128_4491196_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT49703.1|4491240_4492977_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYT49704.1|4492976_4495472_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT49705.1|4495495_4496542_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYT49706.1|4496544_4497822_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYT49707.1|4498066_4498606_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT49708.1|4499459_4500971_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYT49709.1|4500954_4502544_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49710.1|4502707_4503721_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4503898:4503914	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYT49711.1|4504147_4504441_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49712.1|4504437_4504926_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49713.1|4505105_4505558_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49714.1|4510780_4511242_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49715.1|4511238_4511460_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYT49716.1|4512316_4513099_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49717.1|4513725_4513950_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49718.1|4514079_4515177_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYT49719.1|4515487_4516747_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4516906:4516922	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 12
CP029873	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 chromosome, complete genome	4782825	4658999	4669258	4782825	capsid	Enterobacteria_phage(77.78%)	13	NA	NA
AYT49856.1|4658999_4660076_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYT49857.1|4660072_4661146_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYT49858.1|4661120_4662284_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49859.1|4662559_4663126_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYT49860.1|4663141_4663381_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYT49861.1|4663384_4664245_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYT49862.1|4664667_4664991_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYT49863.1|4664974_4665475_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
AYT49864.1|4665471_4665699_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49865.1|4665695_4666016_+	P4 phage protein	NA	NA	NA	NA	NA
AYT49866.1|4666030_4666705_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	75.1	1.4e-85
AYT49867.1|4666701_4668363_+	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	90.2	1.9e-296
AYT49868.1|4669099_4669258_+	recombinase	NA	Q7M297	Enterobacteria_phage	57.4	3.9e-10
>prophage 1
CP029874	Salmonella enterica subsp. enterica serovar Typhi strain 343077_211171 plasmid pK91, complete sequence	91892	1882	37505	91892	transposase,integrase	Escherichia_phage(30.0%)	43	1445:1458	39258:39271
1445:1458	attL	GAACTGCGCCGCCG	NA	NA	NA	NA
AYT49960.1|1882_2887_+|transposase	transposase InsD1 for insertion sequence IS4321R	transposase	NA	NA	NA	NA
AYT49961.1|3068_3245_-|integrase	phage integrase family protein	integrase	T1S9J3	Salmonella_phage	68.6	1.0e-06
AYT49962.1|3574_4390_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	27.6	4.5e-09
AYT49963.1|4476_4779_+	Phosphoglucosamine mutase	NA	NA	NA	NA	NA
AYT49964.1|4954_5608_-|transposase	transposase InsA	transposase	NA	NA	NA	NA
AYT49965.1|5723_6584_-	beta-lactamase	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
AYT49966.1|6766_7324_-	TnpR	NA	Q1MVP4	Enterobacteria_phage	100.0	7.0e-94
AYT49967.1|7487_10493_+|transposase	transposase	transposase	Q1MVP5	Enterobacteria_phage	100.0	0.0e+00
AYT49968.1|10517_11054_-	IS2 resolvase	NA	Q9ZXG3	Shigella_phage	69.7	1.2e-69
AYT49969.1|11182_11377_-|transposase	transposase	transposase	Q76S41	Shigella_phage	82.8	2.7e-21
AYT49970.1|11386_11578_-|transposase	IS2 transposase	transposase	Q76S41	Shigella_phage	72.2	3.2e-14
AYT49971.1|11945_12602_+	quinolone resistance protein	NA	NA	NA	NA	NA
AYT49972.1|12920_13358_-	resolvase protein	NA	A0A219YB42	Aeromonas_phage	43.8	5.2e-20
AYT49973.1|13381_14776_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49974.1|14809_15382_-	resolvase-like protein	NA	M9Q1K0	Clostridium_phage	39.4	3.4e-19
AYT49975.1|15518_16109_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49976.1|16215_16938_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	3.2e-139
AYT49977.1|16955_17738_+	replication initiator protein	NA	Q71T61	Escherichia_phage	50.4	9.9e-62
AYT49978.1|17765_18803_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49979.1|19200_20229_+	site-specific tyrosine recombinase XerC	NA	Q5XLQ5	Enterobacteria_phage	42.1	1.1e-60
AYT49980.1|20391_20646_+	hypothetical protein	NA	Q5QBE7	Escherichia_phage	75.0	2.1e-29
AYT49981.1|20642_21134_+	hypothetical protein	NA	NA	NA	NA	NA
AYT49982.1|21126_21621_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A222YYP1	Escherichia_phage	88.4	1.5e-79
AYT49983.1|21634_22435_+	hypothetical protein	NA	A0A222YXM9	Escherichia_phage	71.1	9.4e-92
AYT49984.1|22518_22899_-	death on curing protein	NA	Q71T66	Escherichia_phage	90.3	1.8e-56
AYT49985.1|22898_23120_-	antitoxin of P1 addiction system	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
AYT49986.1|23192_23588_-	DNA polymerase V subunit	NA	Q1MVE7	Enterobacteria_phage	76.2	2.1e-52
AYT49987.1|23696_23945_-	DNA polymerase III subunit theta	NA	Q71T70	Escherichia_phage	85.4	2.8e-31
AYT49988.1|23947_24214_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49989.1|24283_24574_-	hypothetical protein	NA	A0A077SK55	Escherichia_phage	87.3	1.8e-32
AYT49990.1|24771_25485_+|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	86.5	2.6e-109
AYT49991.1|25697_26897_+|transposase	IS1294 transposase	transposase	NA	NA	NA	NA
AYT49992.1|27027_27489_+	hypothetical protein	NA	A0A1B0V7H9	Salmonella_phage	57.1	5.9e-38
AYT49993.1|27654_28677_-	hypothetical protein	NA	J9Q7H0	Salmonella_phage	53.9	6.8e-87
AYT49994.1|29396_30572_+	plasmid partition protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.4	2.8e-225
AYT49995.1|30568_31543_+	plasmid partitioning protein	NA	I3WF22	Macacine_betaherpesvirus	89.7	1.7e-156
AYT49996.1|32232_32538_-	hypothetical protein	NA	NA	NA	NA	NA
AYT49997.1|32591_32861_-	Orf44	NA	NA	NA	NA	NA
AYT49998.1|32921_34193_-	protein UmuC	NA	F1C5A5	Cronobacter_phage	63.7	5.6e-155
AYT49999.1|34192_34618_-	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	50.4	2.9e-31
AYT50000.1|35069_36035_+	DNA primase TraC	NA	A0A1V0EEV1	Caulobacter_phage	42.7	1.3e-58
AYT50001.1|36514_36946_+	hypothetical protein	NA	NA	NA	NA	NA
AYT50002.1|36977_37505_-	Endonuclease	NA	A0A1B2LRT6	Wolbachia_phage	39.5	2.8e-20
39258:39271	attR	GAACTGCGCCGCCG	NA	NA	NA	NA
