The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	931741	939053	4785665	protease,integrase	Dickeya_phage(16.67%)	6	932992:933006	944171:944185
AYT72691.1|931741_932860_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYT72692.1|932856_934803_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
932992:933006	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYT72693.1|934932_935154_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYT72694.1|935477_935798_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYT72695.1|935828_938105_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYT72696.1|938675_939053_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
944171:944185	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	1010191	1087503	4785665	terminase,protease,transposase,tail,integrase	Salmonella_phage(73.33%)	93	992257:992276	1062864:1062883
992257:992276	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT72746.1|1010191_1011532_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYT72747.1|1011528_1011777_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYT72748.1|1011817_1012063_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYT72749.1|1012062_1012944_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYT72750.1|1012940_1014005_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYT72751.1|1014082_1014763_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYT72752.1|1014759_1015545_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYT72753.1|1015550_1015847_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYT72754.1|1015937_1016138_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYT72755.1|1016426_1016831_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYT72756.1|1017162_1017537_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYT72757.1|1017621_1018605_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYT72758.1|1018607_1019357_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYT72759.1|1019367_1019715_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYT72760.1|1019711_1020236_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYT72761.1|1020235_1020709_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYT72762.1|1020712_1021285_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYT72763.1|1021378_1021645_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYT72764.1|1021726_1021888_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT72765.1|1022320_1022818_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT72766.1|1023002_1023242_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYT72767.1|1023231_1023537_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYT72768.1|1023576_1024179_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYT72769.1|1024387_1024999_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYT72770.1|1025131_1025929_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYT72771.1|1026327_1026453_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT72772.1|1026588_1027038_-	lipoprotein	NA	NA	NA	NA	NA
AYT72773.1|1027254_1027644_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYT72774.1|1027630_1027912_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYT72775.1|1027911_1028526_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYT72776.1|1028744_1028999_+	hypothetical protein	NA	NA	NA	NA	NA
AYT72777.1|1029103_1029481_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYT72778.1|1029544_1029805_+	hypothetical protein	NA	NA	NA	NA	NA
AYT72779.1|1029894_1030647_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYT72780.1|1030612_1032016_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYT72781.1|1032015_1033485_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYT72782.1|1033576_1034107_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYT72783.1|1034121_1035354_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYT72784.1|1035358_1035856_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYT72785.1|1035867_1036809_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYT72786.1|1036850_1037219_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYT72787.1|1037184_1037592_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYT72788.1|1037588_1038143_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYT72789.1|1038129_1038519_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYT72790.1|1038493_1039057_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYT72791.1|1039060_1040206_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYT72792.1|1040217_1040658_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYT72793.1|1040661_1041114_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYT72794.1|1041291_1043244_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYT72795.1|1043243_1043894_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYT72796.1|1043897_1044200_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYT72797.1|1044202_1045234_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYT72798.1|1045230_1045566_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYT72799.1|1045760_1046492_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT72800.1|1046491_1046920_+	bacteriophage protein	NA	NA	NA	NA	NA
AYT72801.1|1046978_1047734_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYT72802.1|1047821_1047959_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYT72803.1|1047974_1048328_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYT72804.1|1048328_1049528_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYT72805.1|1049524_1050205_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYT72806.1|1050204_1051716_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AYT72807.1|1051730_1052249_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYT72808.1|1053170_1053872_-	hypothetical protein	NA	NA	NA	NA	NA
AYT72809.1|1054184_1054463_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYT72810.1|1054888_1057501_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYT72811.1|1057708_1058719_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYT72812.1|1058881_1059427_+	hypothetical protein	NA	NA	NA	NA	NA
AYT72813.1|1059423_1060533_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYT72814.1|1060631_1062740_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYT72815.1|1062752_1064660_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1062864:1062883	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYT72816.1|1064674_1065928_+	inner membrane protein	NA	NA	NA	NA	NA
AYT72817.1|1065932_1067573_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYT72818.1|1067569_1068133_+	lipoprotein	NA	NA	NA	NA	NA
AYT72819.1|1068386_1068554_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYT72820.1|1068653_1069172_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYT72821.1|1069240_1071001_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYT72822.1|1071186_1071639_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYT72823.1|1071710_1072763_-	outer membrane protein A	NA	NA	NA	NA	NA
AYT72824.1|1073117_1073627_-	cell division inhibitor	NA	NA	NA	NA	NA
AYT72825.1|1073843_1074449_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYT72826.1|1074435_1076589_-	inner membrane protein	NA	NA	NA	NA	NA
AYT72827.1|1076607_1077054_-	hypothetical protein	NA	NA	NA	NA	NA
AYT72828.1|1077177_1079232_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYT72829.1|1079267_1079726_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYT72830.1|1079820_1080483_-	hypothetical protein	NA	NA	NA	NA	NA
AYT72831.1|1080653_1081070_+	hypothetical protein	NA	NA	NA	NA	NA
AYT72832.1|1081114_1081432_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYT72833.1|1081489_1082701_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYT72834.1|1083832_1084291_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT72835.1|1085027_1085309_+	acylphosphatase	NA	NA	NA	NA	NA
AYT72836.1|1085305_1085635_-	sulfite reductase	NA	NA	NA	NA	NA
AYT72837.1|1085721_1086381_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYT72838.1|1087044_1087503_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	1531660	1605258	4785665	protease,tRNA,transposase,head,plate,tail	Burkholderia_virus(44.12%)	72	NA	NA
AYT73239.1|1531660_1532119_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT73240.1|1532621_1532903_+	stress response protein	NA	NA	NA	NA	NA
AYT73241.1|1533171_1533993_+|protease	serine protease	protease	NA	NA	NA	NA
AYT73242.1|1534027_1534357_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYT73243.1|1534343_1534706_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYT73244.1|1534817_1534988_-	hypothetical protein	NA	NA	NA	NA	NA
AYT73245.1|1535122_1536157_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73246.1|1536331_1537720_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYT73247.1|1537730_1539260_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYT73248.1|1539786_1540731_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73249.1|1540912_1541302_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYT73250.1|1541273_1541726_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYT73251.1|1541920_1542151_-	hypothetical protein	NA	NA	NA	NA	NA
AYT73252.1|1542147_1542831_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYT73253.1|1543415_1543718_-	hypothetical protein	NA	NA	NA	NA	NA
AYT73254.1|1544288_1544819_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYT73255.1|1545118_1546285_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYT73256.1|1546295_1548065_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYT73257.1|1549509_1549860_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYT73258.1|1550574_1551225_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYT73259.1|1551547_1551859_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYT73260.1|1551858_1552404_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYT73261.1|1552400_1553996_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYT73262.1|1553995_1555492_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYT73263.1|1555472_1556294_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYT73264.1|1556296_1556755_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYT73265.1|1556969_1558085_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYT73266.1|1558099_1559053_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYT73267.1|1559062_1559401_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73268.1|1559402_1559849_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYT73269.1|1559848_1560313_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYT73270.1|1560553_1561981_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYT73271.1|1561980_1562502_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYT73272.1|1562504_1562786_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73273.1|1562883_1563219_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73274.1|1563394_1565860_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYT73275.1|1565859_1566744_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYT73276.1|1566740_1566956_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYT73277.1|1566943_1568098_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYT73278.1|1568094_1568622_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYT73279.1|1568678_1569026_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYT73280.1|1569016_1570120_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYT73281.1|1570112_1570691_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYT73282.1|1570693_1571719_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYT73283.1|1572232_1572850_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYT73284.1|1574360_1574933_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYT73285.1|1575213_1576596_+	amino acid permease	NA	NA	NA	NA	NA
AYT73286.1|1576657_1576993_-	hypothetical protein	NA	NA	NA	NA	NA
AYT73287.1|1577119_1577851_+	two-component response regulator	NA	NA	NA	NA	NA
AYT73288.1|1578331_1579483_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYT73289.1|1579635_1581342_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYT73290.1|1581449_1582754_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYT73291.1|1582829_1583759_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYT73292.1|1583755_1585159_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYT73293.1|1585326_1586973_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYT73294.1|1587172_1588348_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYT73295.1|1588450_1589959_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73296.1|1590664_1591666_+	adenosine deaminase	NA	NA	NA	NA	NA
AYT73297.1|1591739_1592855_-	oxidoreductase	NA	NA	NA	NA	NA
AYT73298.1|1592957_1593113_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73299.1|1593411_1593627_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYT73300.1|1593715_1594156_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73301.1|1594232_1594814_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYT73302.1|1594813_1595392_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYT73303.1|1595384_1597406_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYT73304.1|1597406_1598465_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYT73305.1|1598468_1599089_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYT73306.1|1599091_1599784_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYT73307.1|1599783_1600419_+	endonuclease III	NA	NA	NA	NA	NA
AYT73308.1|1601019_1602525_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYT73309.1|1602629_1603235_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYT73310.1|1603983_1605258_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	1786295	1790707	4785665		Escherichia_phage(50.0%)	6	NA	NA
AYT73494.1|1786295_1786535_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
AYT73495.1|1787407_1788217_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYT73496.1|1788289_1788667_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYT73497.1|1788814_1789357_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYT73498.1|1789548_1790277_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYT73499.1|1790293_1790707_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	1994560	2001794	4785665		Morganella_phage(33.33%)	7	NA	NA
AYT73689.1|1994560_1995991_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AYT73690.1|1996064_1996760_-	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AYT73691.1|1996839_1997151_-	hypothetical protein	NA	NA	NA	NA	NA
AYT73692.1|1997801_1998986_+	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AYT73693.1|1999445_1999658_-	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AYT73694.1|2000103_2001372_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AYT73695.1|2001374_2001794_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	2108095	2118602	4785665		Enterobacteria_phage(37.5%)	10	NA	NA
AYT73792.1|2108095_2109409_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYT73793.1|2109435_2110515_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYT73794.1|2110519_2111293_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYT73795.1|2111308_2112283_-	reductase RfbI	NA	NA	NA	NA	NA
AYT73796.1|2112288_2112840_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYT73797.1|2112840_2113719_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYT73798.1|2113766_2114666_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYT73799.1|2114665_2115751_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYT73800.1|2116127_2117021_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYT73801.1|2117198_2118602_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 7
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	2194493	2203664	4785665	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYT73860.1|2194493_2196527_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYT73861.1|2196767_2197226_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYT73862.1|2197397_2197928_+	lipoprotein	NA	NA	NA	NA	NA
AYT73863.1|2197984_2198452_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYT73864.1|2198498_2199218_-	two-component system response regulator	NA	NA	NA	NA	NA
AYT73865.1|2199214_2200900_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYT73866.1|2201122_2201854_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYT73867.1|2201913_2202021_+	hypothetical protein	NA	NA	NA	NA	NA
AYT73868.1|2202001_2202733_-	ABC transporter permease	NA	NA	NA	NA	NA
AYT73869.1|2202716_2203664_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 8
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	2739101	2752493	4785665	tail	Salmonella_phage(70.0%)	11	NA	NA
AYT74298.1|2739101_2739320_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYT74299.1|2739410_2740511_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT74300.1|2740507_2740993_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT74301.1|2740989_2744067_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYT74302.1|2744059_2744179_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT74303.1|2744193_2744496_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT74304.1|2744550_2745066_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT74305.1|2745075_2746248_-|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT74306.1|2746390_2746963_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYT74307.1|2747640_2748756_+	glycosyltransferase	NA	NA	NA	NA	NA
AYT74308.1|2748836_2752493_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 9
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	3069862	3113565	4785665	tRNA,protease,bacteriocin,transposase	Bacillus_virus(33.33%)	44	NA	NA
AYT74596.1|3069862_3070321_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT74597.1|3070510_3071590_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYT74598.1|3071691_3072855_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYT74599.1|3072876_3073923_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYT74600.1|3074296_3074722_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74601.1|3074747_3075326_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74602.1|3075359_3076034_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74603.1|3076015_3076699_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYT74604.1|3076692_3077349_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYT74605.1|3077453_3077912_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT74606.1|3078100_3080092_-	transketolase	NA	NA	NA	NA	NA
AYT74607.1|3080367_3081126_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYT74608.1|3081226_3082147_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYT74609.1|3082374_3084351_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYT74610.1|3084359_3084491_-	hypothetical protein	NA	NA	NA	NA	NA
AYT74611.1|3084785_3085085_-	membrane protein	NA	NA	NA	NA	NA
AYT74612.1|3085140_3086295_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYT74613.1|3086787_3088182_+	galactose-proton symport	NA	NA	NA	NA	NA
AYT74614.1|3088260_3088758_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74615.1|3088853_3089561_+	endonuclease I	NA	NA	NA	NA	NA
AYT74616.1|3089637_3090369_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYT74617.1|3090388_3091336_+	glutathione synthetase	NA	NA	NA	NA	NA
AYT74618.1|3091551_3092115_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74619.1|3092114_3092531_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYT74620.1|3092577_3093264_-	global regulatory protein	NA	NA	NA	NA	NA
AYT74621.1|3093393_3094374_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYT74622.1|3094391_3095096_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74623.1|3095114_3095681_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74624.1|3095677_3095968_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74625.1|3095975_3096569_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYT74626.1|3096561_3097698_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYT74627.1|3097788_3098796_-	hypothetical protein	NA	NA	NA	NA	NA
AYT74628.1|3098928_3099975_-	L-asparaginase	NA	NA	NA	NA	NA
AYT74629.1|3100293_3100752_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYT74630.1|3100874_3101594_-	hypothetical protein	NA	NA	NA	NA	NA
AYT74631.1|3101643_3101970_-	hypothetical protein	NA	NA	NA	NA	NA
AYT74632.1|3101969_3102689_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYT74633.1|3102843_3103896_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYT74634.1|3103923_3104199_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYT74635.1|3104311_3105397_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYT74636.1|3105613_3106870_+	nucleoside permease	NA	NA	NA	NA	NA
AYT74637.1|3109480_3110188_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74638.1|3112777_3113044_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYT74639.1|3113286_3113565_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 10
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	3491104	3529542	4785665	terminase,portal,transposase,capsid,plate,tail,integrase	Salmonella_phage(82.05%)	46	3486068:3486082	3498234:3498248
3486068:3486082	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYT74967.1|3491104_3492751_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYT74968.1|3492890_3492989_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYT74969.1|3493244_3493574_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74970.1|3493614_3494667_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYT74971.1|3495062_3495632_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYT74972.1|3495757_3495979_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74973.1|3496011_3496521_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYT74974.1|3496695_3496920_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74975.1|3496942_3497284_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYT74976.1|3497351_3497585_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYT74977.1|3497584_3497812_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYT74978.1|3497808_3498666_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3498234:3498248	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYT74979.1|3498662_3501077_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYT74980.1|3501230_3501419_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYT74981.1|3503386_3504301_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74982.1|3504297_3505038_+	hypothetical protein	NA	NA	NA	NA	NA
AYT74983.1|3505072_3506110_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYT74984.1|3506109_3507876_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYT74985.1|3508018_3508852_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYT74986.1|3508868_3509927_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYT74987.1|3509930_3510581_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYT74988.1|3510613_3511141_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYT74989.1|3511140_3511344_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYT74990.1|3511347_3511563_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYT74991.1|3511582_3512056_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYT74992.1|3512057_3512435_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYT74993.1|3512431_3512860_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYT74994.1|3512955_3513387_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYT74995.1|3513379_3513826_+|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYT74996.1|3513894_3514473_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYT74997.1|3514469_3514829_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYT74998.1|3514815_3515724_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYT74999.1|3515716_3516322_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT75000.1|3516318_3517833_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYT75001.1|3517832_3518426_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYT75002.1|3518397_3518838_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYT75003.1|3518840_3520247_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	75.3	5.2e-154
AYT75004.1|3520355_3521528_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYT75005.1|3521537_3522053_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYT75006.1|3522107_3522410_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYT75007.1|3522424_3522544_+	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYT75008.1|3522536_3525614_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYT75009.1|3525610_3526096_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYT75010.1|3526092_3527193_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYT75011.1|3527283_3527502_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYT75012.1|3529083_3529542_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 11
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	4445237	4519587	4785665	terminase,portal,capsid,plate,tail,integrase	Salmonella_phage(82.98%)	76	4506738:4506754	4519746:4519762
AYT75783.1|4445237_4447187_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYT75784.1|4447258_4448167_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75785.1|4448240_4449140_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75786.1|4449181_4449541_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75787.1|4449640_4449910_-	hypothetical protein	NA	NA	NA	NA	NA
AYT75788.1|4450041_4451316_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYT75789.1|4451535_4451913_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75790.1|4451999_4452218_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYT75791.1|4452285_4453386_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYT75792.1|4453382_4453868_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYT75793.1|4453867_4456648_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYT75794.1|4456640_4456760_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYT75795.1|4456774_4457077_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYT75796.1|4457131_4457647_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYT75797.1|4457656_4458829_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYT75798.1|4459363_4460086_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYT75799.1|4460283_4460691_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYT75800.1|4460697_4462317_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYT75801.1|4462313_4462919_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYT75802.1|4462911_4463820_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	95.4	7.0e-152
AYT75803.1|4463806_4464166_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYT75804.1|4464162_4464741_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYT75805.1|4464809_4465256_-|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYT75806.1|4465248_4465680_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AYT75807.1|4465775_4466201_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYT75808.1|4466200_4466578_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYT75809.1|4466582_4467053_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYT75810.1|4467072_4467288_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYT75811.1|4467291_4467495_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYT75812.1|4467494_4467959_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYT75813.1|4468052_4468703_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYT75814.1|4468706_4469771_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYT75815.1|4469787_4470621_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYT75816.1|4470763_4472530_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYT75817.1|4472526_4473573_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYT75818.1|4473621_4474317_-	hypothetical protein	NA	NA	NA	NA	NA
AYT75819.1|4474336_4475401_-	hypothetical protein	NA	NA	NA	NA	NA
AYT75820.1|4475397_4476462_-	hypothetical protein	NA	NA	NA	NA	NA
AYT75821.1|4477386_4477716_-	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	90.8	6.2e-50
AYT75822.1|4477712_4479782_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.9	0.0e+00
AYT75823.1|4479772_4480633_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYT75824.1|4480629_4481214_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYT75825.1|4481210_4481438_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYT75826.1|4481437_4481671_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYT75827.1|4481738_4482080_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYT75828.1|4482043_4482244_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYT75829.1|4482251_4482761_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYT75830.1|4482793_4483036_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYT75831.1|4483152_4483785_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYT75832.1|4483788_4484814_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYT75833.1|4484920_4485274_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYT75834.1|4485890_4486178_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75835.1|4486188_4487079_+	methyltransferase	NA	NA	NA	NA	NA
AYT75836.1|4487078_4487825_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75837.1|4488126_4490097_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT75838.1|4490116_4491421_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT75839.1|4491443_4492139_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYT75840.1|4492164_4492959_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYT75841.1|4492968_4494036_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYT75842.1|4494080_4495817_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYT75843.1|4495816_4498312_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT75844.1|4498335_4499382_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYT75845.1|4499384_4500662_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYT75846.1|4500906_4501446_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYT75847.1|4502299_4503811_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYT75848.1|4503794_4505384_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75849.1|4505547_4506561_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4506738:4506754	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYT75850.1|4506987_4507281_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75851.1|4507277_4507766_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75852.1|4507945_4508398_-	hypothetical protein	NA	NA	NA	NA	NA
AYT75853.1|4513620_4514082_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75854.1|4514078_4514300_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYT75855.1|4515156_4515939_+	hypothetical protein	NA	NA	NA	NA	NA
AYT75856.1|4516565_4516790_-	hypothetical protein	NA	NA	NA	NA	NA
AYT75857.1|4516919_4518017_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYT75858.1|4518327_4519587_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4519746:4519762	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 12
CP029868	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 chromosome, complete genome	4785665	4661839	4672098	4785665	capsid	Enterobacteria_phage(77.78%)	13	NA	NA
AYT75995.1|4661839_4662916_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYT75996.1|4662912_4663986_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYT75997.1|4663960_4665124_-	hypothetical protein	NA	NA	NA	NA	NA
AYT75998.1|4665399_4665966_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYT75999.1|4665981_4666221_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYT76000.1|4666224_4667085_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYT76001.1|4667507_4667831_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYT76002.1|4667814_4668315_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
AYT76003.1|4668311_4668539_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76004.1|4668535_4668856_+	P4 phage protein	NA	NA	NA	NA	NA
AYT76005.1|4668870_4669545_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	75.1	1.4e-85
AYT76006.1|4669541_4671203_+	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	90.2	1.9e-296
AYT76007.1|4671939_4672098_+	recombinase	NA	Q7M297	Enterobacteria_phage	57.4	3.9e-10
>prophage 1
CP029869	Salmonella enterica subsp. enterica serovar Typhi strain 343077_215174 plasmid pK91, complete sequence	91891	2968	79064	91891	protease,transposase	Escherichia_phage(28.12%)	76	NA	NA
AYT76099.1|2968_4045_+|transposase	transposase of ISEc21	transposase	NA	NA	NA	NA
AYT76100.1|4447_6538_-|protease	Lon protease	protease	NA	NA	NA	NA
AYT76101.1|6554_9212_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76102.1|9211_12841_-	Type I restriction-modification system methyltransferase subunit	NA	NA	NA	NA	NA
AYT76103.1|12856_14620_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76104.1|14636_18314_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76105.1|18332_18917_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76106.1|18913_19513_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76107.1|19522_20410_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76108.1|20517_20928_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76109.1|21269_21947_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	43.2	2.2e-41
AYT76110.1|23049_23445_+|transposase	transposase	transposase	Q76S41	Shigella_phage	75.4	1.4e-43
AYT76111.1|23447_24284_+|transposase	transposase InsF for insertion sequence IS3A/B/C/D/E/fA	transposase	Q9ZXG3	Shigella_phage	62.7	4.3e-95
AYT76112.1|24280_24625_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76113.1|25137_26856_-	histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.8	2.1e-27
AYT76114.1|26852_27341_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76115.1|27333_28317_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76116.1|28320_29235_-	response regulator receiver protein	NA	NA	NA	NA	NA
AYT76117.1|29548_29857_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76118.1|29849_30065_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76119.1|30067_30730_+	type IV secretory pathway VirB1 component	NA	NA	NA	NA	NA
AYT76120.1|30740_31040_+	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
AYT76121.1|31049_33800_+	ATPase	NA	NA	NA	NA	NA
AYT76122.1|33818_34535_+	TriD protein	NA	NA	NA	NA	NA
AYT76123.1|34546_34831_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76124.1|34848_35856_+	TriE protein	NA	NA	NA	NA	NA
AYT76125.1|36065_36752_+	TriG protein	NA	NA	NA	NA	NA
AYT76126.1|36744_37638_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
AYT76127.1|37634_38831_+	TriI protein	NA	NA	NA	NA	NA
AYT76128.1|38834_39884_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA	NA
AYT76129.1|39870_40272_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76130.1|40362_40680_+	killer protein	NA	NA	NA	NA	NA
AYT76131.1|40706_41042_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76132.1|41017_41326_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76133.1|41322_43524_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AYT76134.1|43520_43913_+	DNA binding protein	NA	NA	NA	NA	NA
AYT76135.1|44621_46529_+	type IV conjugative transfer system protein TraD	NA	NA	NA	NA	NA
AYT76136.1|46543_47290_+	mobilization protein	NA	NA	NA	NA	NA
AYT76137.1|47282_47810_+	Endonuclease	NA	A0A1B2LRT6	Wolbachia_phage	39.5	2.8e-20
AYT76138.1|47841_48273_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76139.1|48752_49718_-	DNA primase TraC	NA	A0A1V0EEV1	Caulobacter_phage	42.7	1.3e-58
AYT76140.1|50169_50595_+	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	50.4	2.9e-31
AYT76141.1|50594_51866_+	protein UmuC	NA	F1C5A5	Cronobacter_phage	63.7	5.6e-155
AYT76142.1|51926_52196_+	Orf44	NA	NA	NA	NA	NA
AYT76143.1|52249_52555_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76144.1|53244_54219_-	plasmid partitioning protein	NA	I3WF22	Macacine_betaherpesvirus	89.7	1.7e-156
AYT76145.1|54215_55391_-	plasmid partition protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.4	2.8e-225
AYT76146.1|56110_57133_+	hypothetical protein	NA	J9Q7H0	Salmonella_phage	53.9	6.8e-87
AYT76147.1|57298_57760_-	hypothetical protein	NA	A0A1B0V7H9	Salmonella_phage	57.1	5.9e-38
AYT76148.1|57890_59090_-|transposase	IS1294 transposase	transposase	NA	NA	NA	NA
AYT76149.1|59302_60016_-|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	86.5	2.6e-109
AYT76150.1|60213_60504_+	hypothetical protein	NA	A0A077SK55	Escherichia_phage	87.3	1.8e-32
AYT76151.1|60573_60840_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76152.1|60842_61091_+	DNA polymerase III subunit theta	NA	Q71T70	Escherichia_phage	85.4	2.8e-31
AYT76153.1|61199_61595_+	DNA polymerase V subunit	NA	Q1MVE7	Enterobacteria_phage	76.2	2.1e-52
AYT76154.1|61667_61889_+	antitoxin of P1 addiction system	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
AYT76155.1|61888_62269_+	death on curing protein	NA	Q71T66	Escherichia_phage	90.3	1.8e-56
AYT76156.1|62352_63153_-	hypothetical protein	NA	A0A222YXM9	Escherichia_phage	71.1	9.4e-92
AYT76157.1|63166_63661_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A222YYP1	Escherichia_phage	88.4	1.5e-79
AYT76158.1|63653_64145_-	hypothetical protein	NA	NA	NA	NA	NA
AYT76159.1|64141_64396_-	hypothetical protein	NA	Q5QBE7	Escherichia_phage	75.0	2.1e-29
AYT76160.1|64558_65587_-	site-specific tyrosine recombinase XerC	NA	Q5XLQ5	Enterobacteria_phage	42.1	1.1e-60
AYT76161.1|65984_67022_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76162.1|67049_67877_-	replication initiator protein	NA	Q71T61	Escherichia_phage	50.4	8.0e-62
AYT76163.1|67849_68572_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	3.2e-139
AYT76164.1|68678_69269_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76165.1|69405_69978_+	resolvase-like protein	NA	M9Q1K0	Clostridium_phage	39.4	3.4e-19
AYT76166.1|70011_71406_+	hypothetical protein	NA	NA	NA	NA	NA
AYT76167.1|71429_71867_+	resolvase protein	NA	A0A219YB42	Aeromonas_phage	43.8	5.2e-20
AYT76168.1|72185_72842_-	quinolone resistance protein	NA	NA	NA	NA	NA
AYT76169.1|73209_73401_+|transposase	IS2 transposase	transposase	Q76S41	Shigella_phage	72.2	3.2e-14
AYT76170.1|73410_73605_+|transposase	transposase	transposase	Q76S41	Shigella_phage	82.8	2.7e-21
AYT76171.1|73733_74270_+	IS2 resolvase	NA	Q9ZXG3	Shigella_phage	69.7	1.2e-69
AYT76172.1|74294_77300_-|transposase	transposase	transposase	Q1MVP5	Enterobacteria_phage	100.0	0.0e+00
AYT76173.1|77463_78021_+	TnpR	NA	Q1MVP4	Enterobacteria_phage	100.0	7.0e-94
AYT76174.1|78203_79064_+	beta-lactamase	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
