assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003717595.1_ASM371759v1	CP030240	Escherichia coli strain ER1709 chromosome, complete genome	1	437609-438371	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,9	12	TypeI-E	cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|209aa|up_9|CP030240.1_428801_429428_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_8|CP030240.1_429421_430183_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_7|CP030240.1_430163_431213_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_6|CP030240.1_431209_431689_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|104aa|up_5|CP030240.1_432416_432728_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP030240.1_432921_433245_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP030240.1_433294_433900_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP030240.1_433899_435327_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP030240.1_435328_436237_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP030240.1_436488_437526_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|CP030240.1_438476_438761_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|CP030240.1_438762_439680_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|CP030240.1_439695_440295_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|CP030240.1_440281_440956_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|CP030240.1_440958_442050_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|CP030240.1_442062_442545_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|CP030240.1_442537_444046_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|CP030240.1_444460_447127_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|CP030240.1_447485_448220_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|CP030240.1_448294_450007_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCA_003717595.1_ASM371759v1	CP030240	Escherichia coli strain ER1709 chromosome, complete genome	2	463922-464315	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Unclear	GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA|47aa|down_1|CP030240.1_465464_465605_+	NA|424aa|up_9|CP030240.1_452564_453836_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|CP030240.1_453826_454087_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|CP030240.1_454103_454679_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|CP030240.1_454826_455687_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|CP030240.1_455683_456463_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP030240.1_456440_457778_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP030240.1_457871_459326_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP030240.1_459395_460181_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP030240.1_460499_461777_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP030240.1_461803_463282_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP030240.1_464654_465326_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|CP030240.1_465464_465605_+	NA	NA|433aa|down_2|CP030240.1_466550_467849_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|CP030240.1_467936_469574_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|CP030240.1_469801_470593_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|CP030240.1_470663_470999_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|CP030240.1_470998_471247_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|425aa|down_7|CP030240.1_473315_474589_-	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|434aa|down_8|CP030240.1_474942_476244_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|CP030240.1_476300_479057_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCA_003717595.1_ASM371759v1	CP030240	Escherichia coli strain ER1709 chromosome, complete genome	3	2552830-2552974	3	CRISPRCasFinder	no		cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA|66aa|up_4|CP030240.1_2548955_2549153_+,NA	NA|372aa|up_9|CP030240.1_2545458_2546574_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|CP030240.1_2546590_2547400_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|CP030240.1_2547519_2547978_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|CP030240.1_2548159_2548684_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|CP030240.1_2548733_2548925_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|66aa|up_4|CP030240.1_2548955_2549153_+	NA	NA|226aa|up_3|CP030240.1_2549182_2549860_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_2|CP030240.1_2549931_2550216_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|94aa|up_1|CP030240.1_2550423_2550705_+	pfam10971, DUF2773, Protein of unknown function (DUF2773)	NA|304aa|up_0|CP030240.1_2550862_2551774_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|395aa|down_0|CP030240.1_2553050_2554235_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|CP030240.1_2554360_2557507_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|CP030240.1_2557503_2558706_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|CP030240.1_2558895_2559585_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|CP030240.1_2559642_2560938_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|CP030240.1_2561344_2562664_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|CP030240.1_2562738_2564112_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|605aa|down_7|CP030240.1_2564270_2566085_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|CP030240.1_2566089_2566671_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|CP030240.1_2566763_2567834_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCA_003717595.1_ASM371759v1	CP030240	Escherichia coli strain ER1709 chromosome, complete genome	4	2693114-2693210	4	CRISPRCasFinder	no		cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|454aa|up_9|CP030240.1_2680894_2682256_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|CP030240.1_2682312_2683614_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|CP030240.1_2683635_2684781_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|CP030240.1_2685008_2685794_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|CP030240.1_2685804_2687040_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|CP030240.1_2687061_2688111_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|CP030240.1_2688427_2690095_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|CP030240.1_2690104_2691364_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|CP030240.1_2691374_2692190_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|CP030240.1_2692186_2693080_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|CP030240.1_2693274_2694342_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|CP030240.1_2694338_2694848_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|CP030240.1_2694965_2695688_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|CP030240.1_2695690_2696185_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|CP030240.1_2696358_2697744_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|CP030240.1_2697779_2698301_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|CP030240.1_2698408_2698621_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|CP030240.1_2698622_2699489_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|CP030240.1_2699959_2700502_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|CP030240.1_2700721_2701414_+	PRK15195, PRK15195, molecular chaperone FimC
GCA_003717595.1_ASM371759v1	CP030240	Escherichia coli strain ER1709 chromosome, complete genome	5	4473887-4474013	5	CRISPRCasFinder	no		cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|259aa|up_9|CP030240.1_4454052_4454829_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_8|CP030240.1_4454833_4456483_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|162aa|up_7|CP030240.1_4456483_4456969_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|1338aa|up_6|CP030240.1_4456984_4460998_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|CP030240.1_4461021_4461645_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|CP030240.1_4461641_4463330_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|CP030240.1_4463478_4466106_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|CP030240.1_4466252_4466975_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|CP030240.1_4467102_4470855_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|CP030240.1_4471550_4473836_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|CP030240.1_4474069_4475200_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|CP030240.1_4475199_4475454_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|CP030240.1_4475507_4476158_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|69aa|down_3|CP030240.1_4476372_4476579_+	PRK09729, PRK09729, hypothetical protein; Provisional	NA|359aa|down_4|CP030240.1_4476620_4477697_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_5|CP030240.1_4477701_4479060_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_6|CP030240.1_4479332_4480961_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_7|CP030240.1_4480950_4482210_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_8|CP030240.1_4482206_4483397_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_9|CP030240.1_4483589_4484489_+	PRK09956, PRK09956, ISNCY family transposase
