assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003717535.1_ASM371753v1	CP029954	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 chromosome, complete genome	1	2902631-2903051	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	c2c9_V-U4,DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	TypeI-E	c2c9_V-U4,DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|58aa|down_7|CP029954.1_2909180_2909354_-	NA|254aa|up_9|CP029954.1_2894497_2895259_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP029954.1_2895239_2896289_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP029954.1_2896285_2896765_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP029954.1_2896764_2897475_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP029954.1_2897493_2897805_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|CP029954.1_2897995_2898352_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP029954.1_2898369_2898975_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|CP029954.1_2898961_2900401_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP029954.1_2900410_2901319_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|CP029954.1_2901569_2902616_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP029954.1_2903135_2903429_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|CP029954.1_2903431_2904349_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|CP029954.1_2904348_2905053_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|CP029954.1_2905052_2905778_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|355aa|down_4|CP029954.1_2905787_2906852_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|CP029954.1_2906868_2907471_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|CP029954.1_2907487_2909023_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|58aa|down_7|CP029954.1_2909180_2909354_-	NA	NA|318aa|down_8|CP029954.1_2912461_2913415_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|CP029954.1_2913502_2914237_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_003717535.1_ASM371753v1	CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	1	27611-27768	1	PILER-CR	no		csa3	Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|259aa|up_9|CP029953.1_18704_19481_+,NA|114aa|up_8|CP029953.1_19669_20011_+,NA|88aa|up_7|CP029953.1_20111_20375_+,NA|233aa|up_6|CP029953.1_20608_21307_+,NA|99aa|up_5|CP029953.1_21461_21758_-,NA|99aa|up_2|CP029953.1_25201_25498_+,NA|172aa|down_0|CP029953.1_27957_28473_-,NA|386aa|down_3|CP029953.1_34156_35314_-,NA|274aa|down_5|CP029953.1_36512_37334_-,NA|292aa|down_8|CP029953.1_40149_41025_+,NA|194aa|down_9|CP029953.1_41278_41860_-	NA|259aa|up_9|CP029953.1_18704_19481_+	NA	NA|114aa|up_8|CP029953.1_19669_20011_+	NA	NA|88aa|up_7|CP029953.1_20111_20375_+	NA	NA|233aa|up_6|CP029953.1_20608_21307_+	NA	NA|99aa|up_5|CP029953.1_21461_21758_-	NA	NA|795aa|up_4|CP029953.1_21845_24230_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|203aa|up_3|CP029953.1_24480_25089_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|99aa|up_2|CP029953.1_25201_25498_+	NA	NA|199aa|up_1|CP029953.1_25502_26099_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|CP029953.1_26490_27372_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|172aa|down_0|CP029953.1_27957_28473_-	NA	NA|819aa|down_1|CP029953.1_29123_31580_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|585aa|down_2|CP029953.1_32216_33971_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_3|CP029953.1_34156_35314_-	NA	NA|275aa|down_4|CP029953.1_35673_36498_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_5|CP029953.1_36512_37334_-	NA	NA|236aa|down_6|CP029953.1_37616_38324_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|359aa|down_7|CP029953.1_38538_39615_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|292aa|down_8|CP029953.1_40149_41025_+	NA	NA|194aa|down_9|CP029953.1_41278_41860_-	NA
