The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	930361	937673	4786194	integrase,protease	Dickeya_phage(16.67%)	6	931612:931626	942791:942805
AYR89625.1|930361_931480_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYR89626.1|931476_933423_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
931612:931626	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYR89627.1|933552_933774_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYR89628.1|934097_934418_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYR89629.1|934448_936725_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYR89630.1|937295_937673_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
942791:942805	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	1008616	1085928	4786194	terminase,protease,integrase,transposase,tail	Salmonella_phage(73.33%)	93	990682:990701	1061289:1061308
990682:990701	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYR89680.1|1008616_1009957_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYR89681.1|1009953_1010202_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYR89682.1|1010242_1010488_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYR89683.1|1010487_1011369_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYR89684.1|1011365_1012430_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYR89685.1|1012507_1013188_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYR89686.1|1013184_1013970_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYR89687.1|1013975_1014272_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYR89688.1|1014362_1014563_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYR89689.1|1014851_1015256_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYR89690.1|1015587_1015962_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYR89691.1|1016046_1017030_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYR89692.1|1017032_1017782_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYR89693.1|1017792_1018140_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYR89694.1|1018136_1018661_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYR89695.1|1018660_1019134_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYR89696.1|1019137_1019710_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYR89697.1|1019803_1020070_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYR89698.1|1020151_1020313_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR89699.1|1020745_1021243_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR89700.1|1021427_1021667_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYR89701.1|1021656_1021962_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYR89702.1|1022001_1022604_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYR89703.1|1022812_1023424_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYR89704.1|1023556_1024354_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYR89705.1|1024752_1024878_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR89706.1|1025013_1025463_-	lipoprotein	NA	NA	NA	NA	NA
AYR89707.1|1025679_1026069_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYR89708.1|1026055_1026337_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYR89709.1|1026336_1026951_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYR89710.1|1027169_1027424_+	hypothetical protein	NA	NA	NA	NA	NA
AYR89711.1|1027528_1027906_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYR89712.1|1027969_1028230_+	hypothetical protein	NA	NA	NA	NA	NA
AYR89713.1|1028319_1029072_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYR89714.1|1029037_1030441_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYR89715.1|1030440_1031910_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYR89716.1|1032001_1032532_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYR89717.1|1032546_1033779_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYR89718.1|1033783_1034281_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYR89719.1|1034292_1035234_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYR89720.1|1035275_1035644_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYR89721.1|1035609_1036017_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYR89722.1|1036013_1036568_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYR89723.1|1036554_1036944_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYR89724.1|1036918_1037482_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYR89725.1|1037485_1038631_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYR89726.1|1038642_1039083_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYR89727.1|1039086_1039539_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYR89728.1|1039716_1041669_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYR89729.1|1041668_1042319_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYR89730.1|1042322_1042625_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYR89731.1|1042627_1043659_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYR89732.1|1043655_1043991_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYR89733.1|1044185_1044917_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR89734.1|1044916_1045345_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR89735.1|1045403_1046159_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYR89736.1|1046246_1046384_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYR89737.1|1046399_1046753_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYR89738.1|1046753_1047953_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYR89739.1|1047949_1048630_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYR89740.1|1048629_1050141_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AYR89741.1|1050155_1050674_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYR89742.1|1051595_1052297_-	hypothetical protein	NA	NA	NA	NA	NA
AYR89743.1|1052609_1052888_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYR89744.1|1053313_1055926_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYR89745.1|1056133_1057144_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYR89746.1|1057306_1057852_+	hypothetical protein	NA	NA	NA	NA	NA
AYR89747.1|1057848_1058958_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYR89748.1|1059056_1061165_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYR89749.1|1061177_1063085_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1061289:1061308	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYR89750.1|1063099_1064353_+	inner membrane protein	NA	NA	NA	NA	NA
AYR89751.1|1064357_1065998_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYR89752.1|1065994_1066558_+	lipoprotein	NA	NA	NA	NA	NA
AYR89753.1|1066811_1066979_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYR89754.1|1067078_1067597_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYR89755.1|1067665_1069426_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYR89756.1|1069611_1070064_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYR89757.1|1070135_1071188_-	outer membrane protein A	NA	NA	NA	NA	NA
AYR89758.1|1071542_1072052_-	cell division inhibitor	NA	NA	NA	NA	NA
AYR89759.1|1072268_1072874_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYR89760.1|1072860_1075014_-	inner membrane protein	NA	NA	NA	NA	NA
AYR89761.1|1075032_1075479_-	hypothetical protein	NA	NA	NA	NA	NA
AYR89762.1|1075602_1077657_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYR89763.1|1077692_1078151_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYR89764.1|1078245_1078908_-	hypothetical protein	NA	NA	NA	NA	NA
AYR89765.1|1079078_1079495_+	hypothetical protein	NA	NA	NA	NA	NA
AYR89766.1|1079539_1079857_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYR89767.1|1079914_1081126_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYR89768.1|1082257_1082716_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR89769.1|1083452_1083734_+	acylphosphatase	NA	NA	NA	NA	NA
AYR89770.1|1083730_1084060_-	sulfite reductase	NA	NA	NA	NA	NA
AYR89771.1|1084146_1084806_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYR89772.1|1085469_1085928_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	1531422	1604992	4786194	protease,head,transposase,tRNA,tail,plate	Burkholderia_virus(42.11%)	81	NA	NA
AYR90173.1|1531422_1531881_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR90174.1|1532383_1532665_+	stress response protein	NA	NA	NA	NA	NA
AYR90175.1|1532933_1533755_+|protease	serine protease	protease	NA	NA	NA	NA
AYR90176.1|1533789_1534119_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYR90177.1|1534105_1534468_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYR90178.1|1534579_1534750_-	hypothetical protein	NA	NA	NA	NA	NA
AYR90179.1|1534884_1535919_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90180.1|1536093_1537482_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYR90181.1|1537492_1539022_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYR90182.1|1539548_1540493_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90183.1|1540674_1541064_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYR90184.1|1541035_1541488_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYR90185.1|1541682_1541913_-	hypothetical protein	NA	NA	NA	NA	NA
AYR90186.1|1541909_1542593_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYR90187.1|1542589_1542805_-	hypothetical protein	NA	NA	NA	NA	NA
AYR90188.1|1542797_1543181_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
AYR90189.1|1543177_1543480_-	hypothetical protein	NA	NA	NA	NA	NA
AYR90190.1|1543489_1543762_-	hypothetical protein	NA	NA	NA	NA	NA
AYR90191.1|1544050_1544581_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYR90192.1|1544608_1544878_-	hypothetical protein	NA	NA	NA	NA	NA
AYR90193.1|1544880_1546047_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYR90194.1|1546057_1547827_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYR90195.1|1548004_1548436_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
AYR90196.1|1548431_1549028_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90197.1|1549271_1549622_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYR90198.1|1550336_1550987_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYR90199.1|1550983_1551310_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
AYR90200.1|1551309_1551621_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYR90201.1|1551620_1552166_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYR90202.1|1552162_1553758_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYR90203.1|1553757_1555254_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYR90204.1|1555234_1556056_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYR90205.1|1556058_1556517_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYR90206.1|1556731_1557847_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYR90207.1|1557861_1558815_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYR90208.1|1558824_1559163_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90209.1|1559164_1559611_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYR90210.1|1559610_1560075_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYR90211.1|1560071_1560326_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90212.1|1560315_1561743_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYR90213.1|1561742_1562264_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYR90214.1|1562266_1562548_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90215.1|1562645_1562981_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90216.1|1563156_1565622_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYR90217.1|1565621_1566506_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYR90218.1|1566502_1566718_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYR90219.1|1566705_1567860_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYR90220.1|1567856_1568384_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYR90221.1|1568440_1568788_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYR90222.1|1568778_1569882_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYR90223.1|1569874_1570453_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYR90224.1|1570455_1571481_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYR90225.1|1571994_1572612_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYR90226.1|1573105_1573498_-	hypothetical protein	NA	Q9MCR6	Enterobacteria_phage	51.1	6.8e-19
AYR90227.1|1574094_1574667_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYR90228.1|1574947_1576330_+	amino acid permease	NA	NA	NA	NA	NA
AYR90229.1|1576391_1576727_-	hypothetical protein	NA	NA	NA	NA	NA
AYR90230.1|1576853_1577585_+	two-component response regulator	NA	NA	NA	NA	NA
AYR90231.1|1578065_1579217_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYR90232.1|1579369_1581076_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYR90233.1|1581183_1582488_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYR90234.1|1582563_1583493_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYR90235.1|1583489_1584893_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYR90236.1|1585060_1586707_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYR90237.1|1586906_1588082_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYR90238.1|1588184_1589693_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90239.1|1590398_1591400_+	adenosine deaminase	NA	NA	NA	NA	NA
AYR90240.1|1591473_1592589_-	oxidoreductase	NA	NA	NA	NA	NA
AYR90241.1|1592691_1592847_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90242.1|1593145_1593361_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYR90243.1|1593449_1593890_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90244.1|1593966_1594548_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYR90245.1|1594547_1595126_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYR90246.1|1595118_1597140_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYR90247.1|1597140_1598199_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYR90248.1|1598202_1598823_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYR90249.1|1598825_1599518_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYR90250.1|1599517_1600153_+	endonuclease III	NA	NA	NA	NA	NA
AYR90251.1|1600753_1602259_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYR90252.1|1602363_1602969_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYR90253.1|1603717_1604992_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	1786029	1790441	4786194		Escherichia_phage(50.0%)	6	NA	NA
AYR90437.1|1786029_1786269_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
AYR90438.1|1787141_1787951_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYR90439.1|1788023_1788401_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYR90440.1|1788548_1789091_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYR90441.1|1789282_1790011_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYR90442.1|1790027_1790441_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	2107828	2118335	4786194		Enterobacteria_phage(37.5%)	10	NA	NA
AYR90735.1|2107828_2109142_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYR90736.1|2109168_2110248_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYR90737.1|2110252_2111026_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYR90738.1|2111041_2112016_-	reductase RfbI	NA	NA	NA	NA	NA
AYR90739.1|2112021_2112573_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYR90740.1|2112573_2113452_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYR90741.1|2113499_2114399_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYR90742.1|2114398_2115484_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYR90743.1|2115860_2116754_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYR90744.1|2116931_2118335_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 6
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	2194226	2203397	4786194	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYR90803.1|2194226_2196260_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYR90804.1|2196500_2196959_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYR90805.1|2197130_2197661_+	lipoprotein	NA	NA	NA	NA	NA
AYR90806.1|2197717_2198185_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYR90807.1|2198231_2198951_-	two-component system response regulator	NA	NA	NA	NA	NA
AYR90808.1|2198947_2200633_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYR90809.1|2200855_2201587_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYR90810.1|2201646_2201754_+	hypothetical protein	NA	NA	NA	NA	NA
AYR90811.1|2201734_2202466_-	ABC transporter permease	NA	NA	NA	NA	NA
AYR90812.1|2202449_2203397_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 7
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	2738937	2752329	4786194	tail	Salmonella_phage(70.0%)	11	NA	NA
AYR91241.1|2738937_2739156_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYR91242.1|2739246_2740347_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYR91243.1|2740343_2740829_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYR91244.1|2740825_2743903_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYR91245.1|2743895_2744015_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYR91246.1|2744029_2744332_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYR91247.1|2744386_2744902_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYR91248.1|2744911_2746084_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYR91249.1|2746226_2746799_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYR91250.1|2747476_2748592_+	glycosyltransferase	NA	NA	NA	NA	NA
AYR91251.1|2748672_2752329_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 8
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	3069490	3113193	4786194	transposase,bacteriocin,protease,tRNA	Bacillus_virus(33.33%)	44	NA	NA
AYR91538.1|3069490_3069949_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR91539.1|3070138_3071218_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYR91540.1|3071319_3072483_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYR91541.1|3072504_3073551_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYR91542.1|3073924_3074350_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91543.1|3074375_3074954_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91544.1|3074987_3075662_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91545.1|3075643_3076327_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYR91546.1|3076320_3076977_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYR91547.1|3077081_3077540_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR91548.1|3077728_3079720_-	transketolase	NA	NA	NA	NA	NA
AYR91549.1|3079995_3080754_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYR91550.1|3080854_3081775_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYR91551.1|3082002_3083979_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYR91552.1|3083987_3084119_-	hypothetical protein	NA	NA	NA	NA	NA
AYR91553.1|3084413_3084713_-	membrane protein	NA	NA	NA	NA	NA
AYR91554.1|3084768_3085923_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYR91555.1|3086415_3087810_+	galactose-proton symport	NA	NA	NA	NA	NA
AYR91556.1|3087888_3088386_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91557.1|3088481_3089189_+	endonuclease I	NA	NA	NA	NA	NA
AYR91558.1|3089265_3089997_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYR91559.1|3090016_3090964_+	glutathione synthetase	NA	NA	NA	NA	NA
AYR91560.1|3091179_3091743_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91561.1|3091742_3092159_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYR91562.1|3092205_3092892_-	global regulatory protein	NA	NA	NA	NA	NA
AYR91563.1|3093021_3094002_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYR91564.1|3094019_3094724_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91565.1|3094742_3095309_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91566.1|3095305_3095596_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91567.1|3095603_3096197_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYR91568.1|3096189_3097326_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYR91569.1|3097416_3098424_-	hypothetical protein	NA	NA	NA	NA	NA
AYR91570.1|3098556_3099603_-	L-asparaginase	NA	NA	NA	NA	NA
AYR91571.1|3099921_3100380_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR91572.1|3100502_3101222_-	hypothetical protein	NA	NA	NA	NA	NA
AYR91573.1|3101271_3101598_-	hypothetical protein	NA	NA	NA	NA	NA
AYR91574.1|3101597_3102317_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYR91575.1|3102471_3103524_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYR91576.1|3103551_3103827_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYR91577.1|3103939_3105025_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYR91578.1|3105241_3106498_+	nucleoside permease	NA	NA	NA	NA	NA
AYR91579.1|3109108_3109816_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91580.1|3112405_3112672_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYR91581.1|3112914_3113193_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 9
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	3490756	3528814	4786194	terminase,integrase,portal,transposase,capsid,tail,plate	Salmonella_phage(82.05%)	46	3485720:3485734	3497886:3497900
3485720:3485734	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYR91910.1|3490756_3492403_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYR91911.1|3492542_3492641_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYR91912.1|3492896_3493226_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91913.1|3493266_3494319_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYR91914.1|3494714_3495284_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYR91915.1|3495409_3495631_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91916.1|3495663_3496173_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYR91917.1|3496347_3496572_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91918.1|3496594_3496936_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYR91919.1|3497003_3497237_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYR91920.1|3497236_3497464_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYR91921.1|3497460_3498318_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3497886:3497900	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYR91922.1|3498314_3500729_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYR91923.1|3500882_3501071_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYR91924.1|3503038_3503953_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91925.1|3503949_3504690_+	hypothetical protein	NA	NA	NA	NA	NA
AYR91926.1|3504724_3505762_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYR91927.1|3505761_3507528_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYR91928.1|3507670_3508504_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYR91929.1|3508520_3509579_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYR91930.1|3509582_3510233_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYR91931.1|3510265_3510793_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYR91932.1|3510792_3510996_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYR91933.1|3510999_3511215_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYR91934.1|3511234_3511708_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYR91935.1|3511709_3512087_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYR91936.1|3512083_3512512_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYR91937.1|3512607_3513039_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYR91938.1|3513031_3513478_+|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYR91939.1|3513546_3514125_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYR91940.1|3514121_3514481_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYR91941.1|3514467_3515376_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYR91942.1|3515368_3515974_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYR91943.1|3515970_3517485_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYR91944.1|3517484_3518078_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYR91945.1|3518049_3518490_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYR91946.1|3518912_3519485_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYR91947.1|3519627_3520800_+|tail	bacteriophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYR91948.1|3520809_3521325_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYR91949.1|3521379_3521682_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYR91950.1|3521696_3521816_+	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYR91951.1|3521808_3524886_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYR91952.1|3524882_3525368_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYR91953.1|3525364_3526465_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYR91954.1|3526555_3526774_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYR91955.1|3528355_3528814_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 10
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	4445847	4520104	4786194	terminase,integrase,portal,capsid,tail,plate	Salmonella_phage(82.98%)	76	4507348:4507364	4520263:4520279
AYR92728.1|4445847_4447797_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYR92729.1|4447868_4448777_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92730.1|4448850_4449750_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92731.1|4449791_4450151_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92732.1|4450250_4450520_-	hypothetical protein	NA	NA	NA	NA	NA
AYR92733.1|4450651_4451926_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYR92734.1|4452145_4452523_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92735.1|4452609_4452828_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYR92736.1|4452895_4453996_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYR92737.1|4453992_4454478_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYR92738.1|4454477_4457258_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYR92739.1|4457250_4457370_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYR92740.1|4457384_4457687_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYR92741.1|4457741_4458257_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYR92742.1|4458266_4459439_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYR92743.1|4459973_4460696_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYR92744.1|4460893_4461301_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYR92745.1|4461307_4462927_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYR92746.1|4462923_4463529_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYR92747.1|4463521_4464430_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AYR92748.1|4464416_4464776_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYR92749.1|4464772_4465351_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYR92750.1|4465419_4465866_-|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYR92751.1|4465858_4466290_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AYR92752.1|4466385_4466811_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYR92753.1|4466810_4467188_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYR92754.1|4467192_4467663_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYR92755.1|4467682_4467898_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYR92756.1|4467901_4468105_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYR92757.1|4468104_4468569_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYR92758.1|4468662_4469313_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYR92759.1|4469316_4470381_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYR92760.1|4470397_4471231_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYR92761.1|4471373_4473140_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYR92762.1|4473136_4474183_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYR92763.1|4474231_4474927_-	hypothetical protein	NA	NA	NA	NA	NA
AYR92764.1|4474946_4476011_-	hypothetical protein	NA	NA	NA	NA	NA
AYR92765.1|4476007_4477072_-	hypothetical protein	NA	NA	NA	NA	NA
AYR92766.1|4477996_4478326_-	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	90.8	6.2e-50
AYR92767.1|4478322_4480392_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.9	0.0e+00
AYR92768.1|4480382_4481243_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYR92769.1|4481239_4481824_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYR92770.1|4481820_4482048_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYR92771.1|4482047_4482281_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYR92772.1|4482348_4482690_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYR92773.1|4482653_4482854_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYR92774.1|4482861_4483371_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYR92775.1|4483403_4483646_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYR92776.1|4483762_4484395_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYR92777.1|4484398_4485424_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYR92778.1|4485530_4485884_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYR92779.1|4486500_4486788_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92780.1|4486798_4487689_+	methyltransferase	NA	NA	NA	NA	NA
AYR92781.1|4487688_4488435_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92782.1|4488736_4490707_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYR92783.1|4490726_4492031_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYR92784.1|4492053_4492749_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYR92785.1|4492774_4493569_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYR92786.1|4493578_4494646_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYR92787.1|4494690_4496427_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYR92788.1|4496426_4498922_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYR92789.1|4498945_4499992_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYR92790.1|4499994_4501272_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYR92791.1|4501516_4502056_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYR92792.1|4502909_4504421_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYR92793.1|4504404_4505994_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92794.1|4506157_4507171_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4507348:4507364	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYR92795.1|4507597_4507891_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92796.1|4507887_4508376_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92797.1|4508555_4509008_-	hypothetical protein	NA	NA	NA	NA	NA
AYR92798.1|4514230_4514692_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92799.1|4514688_4514910_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYR92800.1|4515766_4516549_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92801.1|4517175_4517400_-	hypothetical protein	NA	NA	NA	NA	NA
AYR92802.1|4517529_4518534_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYR92803.1|4518844_4520104_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4520263:4520279	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 11
CP029945	Salmonella enterica subsp. enterica serovar Typhi strain 311189_211186 chromosome, complete genome	4786194	4662356	4672615	4786194	capsid	Enterobacteria_phage(77.78%)	13	NA	NA
AYR92940.1|4662356_4663433_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYR92941.1|4663429_4664503_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYR92942.1|4664477_4665641_-	hypothetical protein	NA	NA	NA	NA	NA
AYR92943.1|4665916_4666483_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYR92944.1|4666498_4666738_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYR92945.1|4666741_4667602_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYR92946.1|4668024_4668348_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYR92947.1|4668331_4668832_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
AYR92948.1|4668828_4669056_+	hypothetical protein	NA	NA	NA	NA	NA
AYR92949.1|4669052_4669373_+	P4 phage protein	NA	NA	NA	NA	NA
AYR92950.1|4669387_4670062_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	75.1	1.4e-85
AYR92951.1|4670058_4671720_+	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	90.2	1.9e-296
AYR92952.1|4672456_4672615_+	recombinase	NA	Q7M297	Enterobacteria_phage	57.4	3.9e-10
