The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033427	Mycobacterium avium subsp. paratuberculosis strain MAPK_CN9/15 chromosome, complete genome	4831261	913896	920468	4831261		Bacillus_phage(33.33%)	8	NA	NA
AYQ67570.1|913896_916062_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	5.7e-208
AYQ67571.1|916031_916484_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.7	1.7e-13
AYQ67572.1|916526_916766_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	64.5	2.0e-21
AYQ67573.1|916841_917108_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ67574.1|917295_917850_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	5.4e-06
AYQ67575.1|917943_918558_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ67576.1|918557_919601_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	27.9	1.1e-18
AYQ67577.1|919535_920468_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.9	5.9e-05
>prophage 2
CP033427	Mycobacterium avium subsp. paratuberculosis strain MAPK_CN9/15 chromosome, complete genome	4831261	2724312	2789164	4831261	holin,transposase,tRNA,protease	uncultured_Mediterranean_phage(17.65%)	60	NA	NA
AYQ70987.1|2724312_2725506_+|protease	serine protease	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	25.0	2.6e-05
AYQ69101.1|2725498_2726464_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYQ69102.1|2726464_2727004_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AYQ69103.1|2727224_2727896_+|protease	serine protease	protease	NA	NA	NA	NA
AYQ70988.1|2727987_2729940_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.4	5.8e-87
AYQ69104.1|2730054_2730597_+	DUF4232 domain-containing protein	NA	NA	NA	NA	NA
AYQ69105.1|2730681_2732307_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYQ69106.1|2732308_2733235_+	ABC transporter permease	NA	NA	NA	NA	NA
AYQ69107.1|2733227_2734103_+	ABC transporter permease	NA	NA	NA	NA	NA
AYQ70989.1|2734099_2735746_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.0	8.0e-13
AYQ69108.1|2735735_2736494_+	oxidoreductase	NA	NA	NA	NA	NA
AYQ69109.1|2736959_2737817_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AYQ69110.1|2738329_2739385_+	helicase	NA	NA	NA	NA	NA
AYQ69111.1|2739381_2740557_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
AYQ69112.1|2740553_2741357_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ70990.1|2741379_2741967_+	type II secretion system F family protein	NA	NA	NA	NA	NA
AYQ69113.1|2741985_2742186_+	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
AYQ70992.1|2742245_2742512_+	pilus biosynthesis protein TadE	NA	NA	NA	NA	NA
AYQ70991.1|2742468_2742837_+	helicase	NA	NA	NA	NA	NA
AYQ69114.1|2742833_2743871_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ69115.1|2744002_2746333_-	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	27.1	5.1e-05
AYQ70993.1|2746581_2746785_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	56.2	2.0e-14
AYQ69116.1|2746973_2747564_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ69117.1|2747768_2750567_+	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	30.4	3.6e-98
AYQ69118.1|2750563_2752225_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	32.8	8.4e-18
AYQ69119.1|2752322_2753528_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AYQ69120.1|2753755_2754943_+|transposase	IS481-like element ISMav5 family transposase	transposase	NA	NA	NA	NA
AYQ69121.1|2755097_2756906_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ69122.1|2756871_2757813_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L0I7	Tupanvirus	34.8	2.7e-37
AYQ69123.1|2757809_2758151_-	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
AYQ69124.1|2758147_2758849_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYQ69125.1|2758884_2760135_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ69126.1|2760262_2761351_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	41.3	1.1e-53
AYQ69127.1|2761331_2761820_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	44.4	3.6e-30
AYQ69128.1|2761941_2763327_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AYQ69129.1|2763323_2764397_+	hydrolase	NA	NA	NA	NA	NA
AYQ69130.1|2764375_2765338_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AYQ69131.1|2765343_2766000_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	26.4	2.2e-06
AYQ69132.1|2766007_2766757_-	DUF541 domain-containing protein	NA	NA	NA	NA	NA
AYQ69133.1|2767070_2767370_+	PE family protein	NA	NA	NA	NA	NA
AYQ69134.1|2768650_2770231_-	HNH endonuclease	NA	NA	NA	NA	NA
AYQ69135.1|2770260_2771274_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AYQ69136.1|2771273_2772461_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AYQ69137.1|2772457_2773387_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYQ69138.1|2773526_2773940_+	VOC family protein	NA	NA	NA	NA	NA
AYQ69139.1|2773974_2774199_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ69140.1|2774212_2776612_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQU5	Bathycoccus_sp._RCC1105_virus	44.9	4.3e-108
AYQ69141.1|2776628_2777243_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	53.9	6.6e-45
AYQ69142.1|2777262_2778066_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	33.0	3.9e-21
AYQ69143.1|2778058_2778460_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AYQ69144.1|2778568_2779117_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AYQ69145.1|2779116_2779593_+	DUF3180 domain-containing protein	NA	NA	NA	NA	NA
AYQ69146.1|2779680_2781069_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ69147.1|2781184_2782096_+	DUF2520 domain-containing protein	NA	NA	NA	NA	NA
AYQ69148.1|2782092_2783019_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AYQ69149.1|2783018_2783450_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AYQ69150.1|2783452_2784268_+	type III pantothenate kinase	NA	NA	NA	NA	NA
AYQ69151.1|2784314_2785814_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	36.6	3.3e-74
AYQ69152.1|2785957_2786296_+	Lsr2 family protein	NA	A0A2D1GPL8	Mycobacterium_phage	41.5	2.1e-16
AYQ69153.1|2786632_2789164_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.7	3.0e-128
