The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033428	Mycobacterium avium subsp. paratuberculosis strain MAPK_CN7/15 chromosome, complete genome	4837149	1983269	2048119	4837149	protease,holin,tRNA,transposase	Tupanvirus(17.65%)	60	NA	NA
AYQ77432.1|1983269_1985801_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.7	3.0e-128
AYQ77433.1|1986137_1986476_-	Lsr2 family protein	NA	A0A2D1GPL8	Mycobacterium_phage	41.5	2.1e-16
AYQ77434.1|1986619_1988119_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	36.6	3.3e-74
AYQ77435.1|1988165_1988981_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AYQ77436.1|1988983_1989415_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AYQ77437.1|1989414_1990341_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AYQ77438.1|1990337_1991249_-	DUF2520 domain-containing protein	NA	NA	NA	NA	NA
AYQ77439.1|1991364_1992753_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ77440.1|1992840_1993317_-	DUF3180 domain-containing protein	NA	NA	NA	NA	NA
AYQ77441.1|1993316_1993865_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AYQ77442.1|1993973_1994375_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AYQ77443.1|1994367_1995171_-	dihydropteroate synthase	NA	S4W084	Pandoravirus	33.0	3.9e-21
AYQ77444.1|1995190_1995805_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	53.9	6.6e-45
AYQ77445.1|1995850_1998220_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQU5	Bathycoccus_sp._RCC1105_virus	44.9	4.3e-108
AYQ77446.1|1998233_1998458_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ77447.1|1998492_1998906_-	VOC family protein	NA	NA	NA	NA	NA
AYQ77448.1|1999045_1999975_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYQ77449.1|1999971_2001159_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AYQ77450.1|2001158_2002172_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AYQ77451.1|2002201_2003782_+	HNH endonuclease	NA	NA	NA	NA	NA
AYQ77452.1|2005061_2005361_-	PE family protein	NA	NA	NA	NA	NA
AYQ77453.1|2005674_2006424_+	DUF541 domain-containing protein	NA	NA	NA	NA	NA
AYQ77454.1|2006431_2007088_-	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	26.4	2.2e-06
AYQ77455.1|2007093_2008056_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AYQ77456.1|2008034_2009108_-	hydrolase	NA	NA	NA	NA	NA
AYQ77457.1|2009104_2010490_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AYQ77458.1|2010611_2011100_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	44.4	3.6e-30
AYQ77459.1|2011080_2012169_-	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	41.3	1.1e-53
AYQ77460.1|2012296_2013547_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ77461.1|2013582_2014284_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYQ77462.1|2014280_2014622_+	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
AYQ77463.1|2014618_2015560_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L0I7	Tupanvirus	34.8	2.7e-37
AYQ77464.1|2015525_2017334_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ77465.1|2017488_2018676_-|transposase	IS481-like element ISMav5 family transposase	transposase	NA	NA	NA	NA
AYQ77466.1|2018903_2020109_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AYQ77467.1|2020206_2021868_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	32.8	8.4e-18
AYQ77468.1|2021864_2024663_-	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	30.4	3.6e-98
AYQ77469.1|2024867_2025458_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ79945.1|2025646_2025850_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	56.2	2.0e-14
AYQ77470.1|2026098_2028429_+	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	27.1	5.1e-05
AYQ77471.1|2028560_2029598_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ79946.1|2029594_2029963_-	helicase	NA	NA	NA	NA	NA
AYQ79947.1|2029919_2030186_-	pilus biosynthesis protein TadE	NA	NA	NA	NA	NA
AYQ77472.1|2030245_2030446_-	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
AYQ79948.1|2030464_2031052_-	type II secretion system F family protein	NA	NA	NA	NA	NA
AYQ77473.1|2031074_2031878_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ77474.1|2031874_2033050_-	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
AYQ77475.1|2033046_2034102_-	helicase	NA	NA	NA	NA	NA
AYQ77476.1|2034614_2035472_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AYQ77477.1|2035937_2036696_-	oxidoreductase	NA	NA	NA	NA	NA
AYQ79949.1|2036685_2038332_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.0	8.0e-13
AYQ77478.1|2038328_2039204_-	ABC transporter permease	NA	NA	NA	NA	NA
AYQ77479.1|2039196_2040123_-	ABC transporter permease	NA	NA	NA	NA	NA
AYQ77480.1|2040124_2041750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYQ77481.1|2041834_2042377_-	DUF4232 domain-containing protein	NA	NA	NA	NA	NA
AYQ79950.1|2042491_2044444_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.4	5.8e-87
AYQ77482.1|2044535_2045207_-|protease	serine protease	protease	NA	NA	NA	NA
AYQ77483.1|2045427_2045967_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AYQ77484.1|2045967_2046933_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYQ79951.1|2046925_2048119_-|protease	serine protease	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	25.0	2.6e-05
>prophage 2
CP033428	Mycobacterium avium subsp. paratuberculosis strain MAPK_CN7/15 chromosome, complete genome	4837149	3851856	3858428	4837149		Bacillus_phage(33.33%)	8	NA	NA
AYQ79007.1|3851856_3852789_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.9	5.9e-05
AYQ79008.1|3852723_3853767_-	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	27.9	1.1e-18
AYQ79009.1|3853766_3854381_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ79010.1|3854474_3855029_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	5.4e-06
AYQ79011.1|3855216_3855483_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ79012.1|3855558_3855798_+	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	64.5	2.0e-21
AYQ79013.1|3855840_3856293_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.7	1.7e-13
AYQ79014.1|3856262_3858428_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	5.7e-208
