assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003711265.1_ASM371126v1	CP024634	Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome	1	810518-814062	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,cas4	cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	Type II-A,Type II-B,Type II-C	CCAGCACATCATAACCTAAAAAACCAGCAACTGAAAC,CCAGCACATCATAACCTAAAAAACCAGCAACTGAAAC,CCAGCACATCATAACCTAAAAAACCAGCAACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	49,49,49	49	TypeII-A,TypeII-C,TypeII-B	cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	NA|1306aa|up_8|CP024634.1_795564_799482_-,NA|158aa|down_0|CP024634.1_814248_814722_-,NA|139aa|down_3|CP024634.1_818093_818510_+,NA|223aa|down_5|CP024634.1_819495_820164_-	NA|301aa|up_9|CP024634.1_794401_795304_-	pfam03496, ADPrib_exo_Tox, ADP-ribosyltransferase exoenzyme	NA|1306aa|up_8|CP024634.1_795564_799482_-	NA	NA|184aa|up_7|CP024634.1_800214_800766_-	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed	NA|224aa|up_6|CP024634.1_800784_801456_-	cd10433, YccA_like, YccA-like proteins	NA|415aa|up_5|CP024634.1_801516_802761_+	PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	cas9|1604aa|up_4|CP024634.1_802796_807608_+	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	NA|238aa|up_3|CP024634.1_807711_808425_+	pfam02661, Fic, Fic/DOC family	cas1|329aa|up_2|CP024634.1_808402_809389_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|103aa|up_1|CP024634.1_809395_809704_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|192aa|up_0|CP024634.1_809693_810269_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|158aa|down_0|CP024634.1_814248_814722_-	NA	NA|361aa|down_1|CP024634.1_815777_816860_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|230aa|down_2|CP024634.1_817383_818073_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|139aa|down_3|CP024634.1_818093_818510_+	NA	NA|197aa|down_4|CP024634.1_818514_819105_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|223aa|down_5|CP024634.1_819495_820164_-	NA	NA|306aa|down_6|CP024634.1_820577_821495_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|337aa|down_7|CP024634.1_821578_822589_+	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|103aa|down_8|CP024634.1_822588_822897_+	pfam01722, BolA, BolA-like protein	NA|523aa|down_9|CP024634.1_822872_824441_+	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional
GCA_003711265.1_ASM371126v1	CP024634	Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome	3	1922489-1922946	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	Orphan	TGTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC,GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCACA,GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCACA	36,36,36	0	0	NA	NA	NA:NA:NA	6,6,5	6	Orphan	cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	NA|107aa|up_9|CP024634.1_1909115_1909436_+,NA|80aa|up_4|CP024634.1_1917613_1917853_-,NA|58aa|up_2|CP024634.1_1919775_1919949_-,NA|70aa|down_0|CP024634.1_1923938_1924148_+,NA|77aa|down_2|CP024634.1_1925703_1925934_-,NA|232aa|down_3|CP024634.1_1925986_1926682_-,NA|79aa|down_4|CP024634.1_1926700_1926937_-,NA|101aa|down_5|CP024634.1_1926998_1927301_-,NA|117aa|down_6|CP024634.1_1927326_1927677_-,NA|157aa|down_7|CP024634.1_1927857_1928328_+	NA|107aa|up_9|CP024634.1_1909115_1909436_+	NA	NA|985aa|up_8|CP024634.1_1909413_1912368_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|437aa|up_7|CP024634.1_1912364_1913675_-	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|569aa|up_6|CP024634.1_1913677_1915384_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|444aa|up_5|CP024634.1_1916050_1917382_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|80aa|up_4|CP024634.1_1917613_1917853_-	NA	NA|335aa|up_3|CP024634.1_1918021_1919026_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|58aa|up_2|CP024634.1_1919775_1919949_-	NA	NA|335aa|up_1|CP024634.1_1920097_1921102_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|298aa|up_0|CP024634.1_1921292_1922186_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|70aa|down_0|CP024634.1_1923938_1924148_+	NA	NA|217aa|down_1|CP024634.1_1924172_1924823_+	PRK13699, PRK13699, putative methylase; Provisional	NA|77aa|down_2|CP024634.1_1925703_1925934_-	NA	NA|232aa|down_3|CP024634.1_1925986_1926682_-	NA	NA|79aa|down_4|CP024634.1_1926700_1926937_-	NA	NA|101aa|down_5|CP024634.1_1926998_1927301_-	NA	NA|117aa|down_6|CP024634.1_1927326_1927677_-	NA	NA|157aa|down_7|CP024634.1_1927857_1928328_+	NA	NA|110aa|down_8|CP024634.1_1930118_1930448_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|164aa|down_9|CP024634.1_1930440_1930932_+	TIGR02771, Conjugal_transfer_protein_TraF, conjugative transfer signal peptidase TraF
GCA_003711265.1_ASM371126v1	CP024634	Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome	4	1925077-1925459	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	Orphan	GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC,GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC,GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC	35,35,35	0	0	NA	NA	NA:NA:NA	5,5,5	5	Orphan	cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	NA|80aa|up_6|CP024634.1_1917613_1917853_-,NA|58aa|up_4|CP024634.1_1919775_1919949_-,NA|70aa|up_1|CP024634.1_1923938_1924148_+,NA|77aa|down_0|CP024634.1_1925703_1925934_-,NA|232aa|down_1|CP024634.1_1925986_1926682_-,NA|79aa|down_2|CP024634.1_1926700_1926937_-,NA|101aa|down_3|CP024634.1_1926998_1927301_-,NA|117aa|down_4|CP024634.1_1927326_1927677_-,NA|157aa|down_5|CP024634.1_1927857_1928328_+	NA|437aa|up_9|CP024634.1_1912364_1913675_-	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|569aa|up_8|CP024634.1_1913677_1915384_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|444aa|up_7|CP024634.1_1916050_1917382_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|80aa|up_6|CP024634.1_1917613_1917853_-	NA	NA|335aa|up_5|CP024634.1_1918021_1919026_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|58aa|up_4|CP024634.1_1919775_1919949_-	NA	NA|335aa|up_3|CP024634.1_1920097_1921102_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|298aa|up_2|CP024634.1_1921292_1922186_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|70aa|up_1|CP024634.1_1923938_1924148_+	NA	NA|217aa|up_0|CP024634.1_1924172_1924823_+	PRK13699, PRK13699, putative methylase; Provisional	NA|77aa|down_0|CP024634.1_1925703_1925934_-	NA	NA|232aa|down_1|CP024634.1_1925986_1926682_-	NA	NA|79aa|down_2|CP024634.1_1926700_1926937_-	NA	NA|101aa|down_3|CP024634.1_1926998_1927301_-	NA	NA|117aa|down_4|CP024634.1_1927326_1927677_-	NA	NA|157aa|down_5|CP024634.1_1927857_1928328_+	NA	NA|110aa|down_6|CP024634.1_1930118_1930448_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|164aa|down_7|CP024634.1_1930440_1930932_+	TIGR02771, Conjugal_transfer_protein_TraF, conjugative transfer signal peptidase TraF	NA|97aa|down_8|CP024634.1_1930967_1931258_+	pfam02303, Phage_DNA_bind, Helix-destabilizing protein	NA|335aa|down_9|CP024634.1_1931354_1932359_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]
GCA_003711265.1_ASM371126v1	CP024634	Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome	5	2810767-2810872	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	Unclear	ATTAGAGTTAAATGTTTACTCTTA	24	0	0	NA	NA	NA	2	2	Unclear	cas3,DEDDh,RT,cas9,cas1,cas2,cas4,csa3,cas6,DinG	NA|99aa|up_9|CP024634.1_2804141_2804438_+,NA|88aa|up_7|CP024634.1_2805205_2805469_+,NA|61aa|up_5|CP024634.1_2806277_2806460_+,NA|239aa|up_4|CP024634.1_2806470_2807187_+,NA|234aa|down_3|CP024634.1_2814564_2815266_+,NA|117aa|down_5|CP024634.1_2817711_2818062_-,NA|163aa|down_9|CP024634.1_2821323_2821812_+	NA|99aa|up_9|CP024634.1_2804141_2804438_+	NA	NA|250aa|up_8|CP024634.1_2804425_2805175_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|88aa|up_7|CP024634.1_2805205_2805469_+	NA	NA|229aa|up_6|CP024634.1_2805561_2806248_+	cd07423, MPP_Prp_like, Bacillus subtilis PrpE and related proteins, metallophosphatase domain	NA|61aa|up_5|CP024634.1_2806277_2806460_+	NA	NA|239aa|up_4|CP024634.1_2806470_2807187_+	NA	NA|207aa|up_3|CP024634.1_2807170_2807791_+	PRK01222, PRK01222, phosphoribosylanthranilate isomerase	NA|300aa|up_2|CP024634.1_2808210_2809110_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|138aa|up_1|CP024634.1_2809113_2809527_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|402aa|up_0|CP024634.1_2809519_2810725_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|371aa|down_0|CP024634.1_2811016_2812129_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|204aa|down_1|CP024634.1_2812176_2812788_-	COG3467, COG3467, Predicted flavin-nucleotide-binding protein [General function prediction only]	NA|452aa|down_2|CP024634.1_2812780_2814136_-	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|234aa|down_3|CP024634.1_2814564_2815266_+	NA	NA|524aa|down_4|CP024634.1_2815275_2816847_+	pfam00743, FMO-like, Flavin-binding monooxygenase-like	NA|117aa|down_5|CP024634.1_2817711_2818062_-	NA	NA|71aa|down_6|CP024634.1_2818440_2818653_+	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|348aa|down_7|CP024634.1_2818920_2819964_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|455aa|down_8|CP024634.1_2819966_2821331_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|163aa|down_9|CP024634.1_2821323_2821812_+	NA
