The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	447379	516757	5434589	protease,integrase,head,tRNA,portal,tail,capsid,terminase	uncultured_Caudovirales_phage(61.11%)	74	464987:465004	480982:480999
AYQ05228.1|447379_448327_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	37.2	2.2e-07
AYQ05229.1|448341_448851_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.3	2.6e-18
AYQ05230.1|448979_450104_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AYQ05231.1|450075_450549_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AYQ05232.1|450574_451117_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05233.1|451121_451694_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA	NA
AYQ05234.1|451697_452516_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AYQ05235.1|452512_452770_+	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
AYQ09823.1|452745_453300_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
AYQ05236.1|459095_459317_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ05237.1|459610_462721_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AYQ05238.1|462733_463873_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYQ05239.1|464251_464902_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA	NA
464987:465004	attL	GTATCAGTTCATGCCGTA	NA	NA	NA	NA
AYQ05240.1|465177_466404_+|integrase	site-specific integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	62.2	1.8e-150
AYQ05241.1|466496_467438_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05242.1|467619_467904_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AYQ05243.1|467914_468694_+	hypothetical protein	NA	Q8HA02	Enterobacteria_phage	51.5	6.2e-40
AYQ05244.1|468817_469012_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
AYQ09824.1|469145_469415_+	host cell division inhibitor Icd-like protein	NA	A0A2H4JGW3	uncultured_Caudovirales_phage	94.4	2.4e-44
AYQ05245.1|469407_469596_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05246.1|469588_469903_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05247.1|469899_470268_+	hypothetical protein	NA	A0A2H4JCX7	uncultured_Caudovirales_phage	81.1	3.7e-51
AYQ05248.1|470264_470630_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05249.1|470629_472765_+	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	62.4	3.4e-205
AYQ05250.1|473107_473443_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05251.1|473491_474004_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ05252.1|474267_475434_+|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	95.9	9.8e-207
AYQ05253.1|475485_476046_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	95.7	1.2e-98
AYQ05254.1|476047_477289_+|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	96.5	1.0e-230
AYQ05255.1|477285_477621_+|head,tail	head-tail adaptor	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	57.8	3.7e-26
AYQ05256.1|477617_477917_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	80.8	3.4e-39
AYQ05257.1|477916_478360_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	91.8	2.8e-77
AYQ05258.1|478486_478678_+|terminase	terminase	terminase	NA	NA	NA	NA
AYQ05259.1|478635_478992_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	99.2	5.5e-60
AYQ05260.1|478975_480637_+|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	98.0	0.0e+00
AYQ05261.1|480639_480831_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05262.1|480984_481281_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
480982:480999	attR	GTATCAGTTCATGCCGTA	NA	NA	NA	NA
AYQ05263.1|481305_482271_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AYQ05264.1|482428_482623_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ05265.1|482628_483510_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AYQ05266.1|483521_484973_-	sodium/pantothenate symporter	NA	NA	NA	NA	NA
AYQ05267.1|484962_485205_-	DUF997 family protein	NA	NA	NA	NA	NA
AYQ05268.1|485315_486665_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AYQ05269.1|486675_487143_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AYQ05270.1|487165_487618_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AYQ05271.1|487841_488450_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AYQ05272.1|488449_489451_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AYQ05273.1|489679_489871_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05274.1|489950_491891_+	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
AYQ05275.1|492196_493240_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
AYQ05276.1|493310_494303_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AYQ05277.1|494302_494791_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AYQ05278.1|494798_495380_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AYQ05279.1|495382_496852_+	ribonuclease G	NA	NA	NA	NA	NA
AYQ05280.1|496889_500687_+	AsmA2 domain-containing protein	NA	NA	NA	NA	NA
AYQ05281.1|500775_502221_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AYQ05282.1|502256_503186_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
AYQ05283.1|503317_503521_+	protein AaeX	NA	NA	NA	NA	NA
AYQ05284.1|503528_504461_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
AYQ05285.1|504466_506434_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
AYQ05286.1|506513_506789_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ05287.1|506839_507106_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AYQ05288.1|507204_507468_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AYQ05289.1|507843_508314_-	transcriptional regulator ArgR	NA	NA	NA	NA	NA
AYQ05290.1|508728_509667_+	malate dehydrogenase	NA	NA	NA	NA	NA
AYQ05291.1|509803_510862_-|protease	serine endoprotease DegS	protease	NA	NA	NA	NA
AYQ05292.1|510949_512317_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.3	6.0e-22
AYQ05293.1|512490_512889_-	DUF1043 family protein	NA	NA	NA	NA	NA
AYQ05294.1|513079_514207_+	cell division protein ZapE	NA	NA	NA	NA	NA
AYQ05295.1|514472_514901_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AYQ05296.1|514916_515309_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AYQ05297.1|515418_515622_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ05298.1|515620_516259_+	stringent starvation protein A	NA	NA	NA	NA	NA
AYQ05299.1|516262_516757_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	54.8	1.5e-26
>prophage 2
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	1240348	1289492	5434589	lysis,integrase,head,portal,tail,transposase,tRNA,plate,capsid,coat	Salmonella_phage(80.0%)	63	1239763:1239809	1278118:1278164
1239763:1239809	attL	TTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
AYQ05999.1|1240348_1241329_-|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
AYQ06000.1|1241374_1242373_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	94.5	2.2e-183
AYQ06001.1|1242375_1243005_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	54.5	1.4e-61
AYQ06002.1|1243127_1243370_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	4.0e-38
AYQ06003.1|1243402_1243912_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	85.8	1.1e-77
AYQ06004.1|1243919_1244120_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	68.8	4.5e-19
AYQ06005.1|1244083_1244422_+	hypothetical protein	NA	A0A218M4I7	Erwinia_phage	58.0	6.2e-29
AYQ06006.1|1244489_1244723_+	DUF2732 family protein	NA	A0A1S6L021	Salmonella_phage	90.9	6.0e-31
AYQ06007.1|1244722_1244950_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	92.0	5.1e-35
AYQ06008.1|1244946_1245798_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	75.4	2.2e-115
AYQ06009.1|1245794_1248179_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	87.9	0.0e+00
AYQ06010.1|1248408_1248660_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ06011.1|1248659_1250144_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
AYQ06012.1|1250251_1250440_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	90.3	2.2e-23
AYQ06013.1|1250451_1250685_+	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	96.1	2.0e-34
AYQ06014.1|1250780_1251464_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ06015.1|1251450_1252530_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ06016.1|1252529_1253531_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ06017.1|1254052_1254322_+	hypothetical protein	NA	D2IZW1	Enterococcus_phage	41.3	1.4e-15
AYQ06018.1|1254378_1255422_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	85.6	3.1e-172
AYQ06019.1|1255421_1257185_-	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	91.8	0.0e+00
AYQ06020.1|1257325_1258159_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	77.6	4.4e-100
AYQ06021.1|1258175_1259228_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	91.0	6.8e-175
AYQ06022.1|1259231_1259885_+	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	80.0	1.9e-90
AYQ06023.1|1259980_1260445_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	85.7	1.5e-73
AYQ06024.1|1260444_1260648_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	89.6	9.8e-30
AYQ09848.1|1260651_1260867_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	88.7	6.1e-30
AYQ06025.1|1260847_1261357_+	lysozyme	NA	E5G6N1	Salmonella_phage	85.2	1.6e-81
AYQ06026.1|1261361_1261745_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	45.4	1.9e-18
AYQ06027.1|1261741_1262170_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	82.5	7.1e-54
AYQ06028.1|1262099_1262303_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	77.6	3.0e-23
AYQ06029.1|1262265_1262688_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	83.2	8.2e-63
AYQ06030.1|1262680_1263127_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	72.3	2.5e-54
AYQ06031.1|1263149_1264016_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ06032.1|1264110_1264683_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	70.8	1.4e-76
AYQ06033.1|1264679_1265042_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	85.6	8.4e-48
AYQ06034.1|1265028_1265937_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	68.9	1.9e-109
AYQ06035.1|1265929_1266601_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	58.9	3.2e-61
AYQ06036.1|1266602_1268552_+|coat	spore coat protein CotH	coat	Q6QI97	Burkholderia_phage	38.9	1.0e-06
AYQ06037.1|1268561_1269680_+	hypothetical protein	NA	A0A248XD67	Klebsiella_phage	38.0	4.4e-55
AYQ06038.1|1269731_1270805_+|tail	phage tail protein	tail	A0A1S6KZZ8	Salmonella_phage	53.6	6.6e-40
AYQ06039.1|1270953_1272126_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	91.5	3.4e-207
AYQ06040.1|1272135_1272651_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	84.2	1.4e-80
AYQ06041.1|1272703_1273003_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	78.0	8.2e-33
AYQ06042.1|1273017_1273137_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
AYQ06043.1|1273129_1275760_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	41.9	8.9e-115
AYQ06044.1|1275756_1276242_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.1	5.2e-61
AYQ06045.1|1276238_1277333_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	83.6	2.4e-170
AYQ06046.1|1277399_1277618_+	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	72.2	1.9e-26
AYQ06047.1|1277645_1278023_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ06048.1|1278626_1279109_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	2.3e-29
1278118:1278164	attR	TTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
AYQ06049.1|1279219_1279696_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AYQ06050.1|1279685_1279976_+	RnfH family protein	NA	NA	NA	NA	NA
AYQ06051.1|1280042_1280384_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AYQ06052.1|1280531_1282193_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AYQ06053.1|1282279_1283158_-	NAD(+) kinase	NA	NA	NA	NA	NA
AYQ06054.1|1283282_1283873_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AYQ06055.1|1283992_1285279_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AYQ06056.1|1285298_1286090_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AYQ06057.1|1286253_1287618_+	signal recognition particle protein	NA	NA	NA	NA	NA
AYQ06058.1|1287877_1288126_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AYQ06059.1|1288144_1288693_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AYQ06060.1|1288724_1289492_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 3
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	1394208	1446951	5434589	transposase,tail,holin,terminase	Salmonella_phage(40.38%)	61	NA	NA
AYQ06148.1|1394208_1395675_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.7	1.2e-87
AYQ06149.1|1395742_1397320_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA	NA
AYQ06150.1|1397511_1398762_+	DUF4102 domain-containing protein	NA	A0A1X9TCT6	Enterobacter_phage	84.4	5.8e-205
AYQ06151.1|1398704_1398947_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ06152.1|1398943_1399537_-	adenine methylase	NA	T1SA14	Salmonella_phage	91.9	6.3e-109
AYQ06153.1|1399533_1400196_-	hypothetical protein	NA	A0A059VF56	Pseudomonas_phage	46.6	1.2e-47
AYQ06154.1|1400192_1400351_-	DUF1317 family protein	NA	T1SAR0	Salmonella_phage	78.8	1.1e-17
AYQ06155.1|1400343_1400637_-	PerC family transcriptional regulator	NA	T1S9J5	Salmonella_phage	71.1	4.0e-32
AYQ06156.1|1400746_1400995_-	AlpA family phage regulatory protein	NA	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	76.8	4.9e-31
AYQ06157.1|1401043_1401925_-	recombinase RecT	NA	T1SBJ5	Salmonella_phage	84.3	8.9e-136
AYQ06158.1|1401921_1402743_-	exodeoxyribonuclease VIII	NA	A0A193GYK2	Enterobacter_phage	80.2	1.8e-130
AYQ06159.1|1402739_1403039_-	hypothetical protein	NA	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	54.5	2.1e-20
AYQ06160.1|1403405_1403987_-	XRE family transcriptional regulator	NA	Q858D7	Salmonella_phage	64.3	7.1e-65
AYQ06161.1|1404141_1404375_+	hypothetical protein	NA	T1SAR5	Salmonella_phage	66.2	9.2e-24
AYQ06162.1|1404521_1404731_+	hypothetical protein	NA	A0A193GYW4	Enterobacter_phage	78.3	1.8e-26
AYQ06163.1|1404730_1405498_+	primosomal protein	NA	A0A193GZ86	Enterobacter_phage	91.4	8.9e-140
AYQ06164.1|1405494_1406280_+	replication protein	NA	A0A193GYX1	Enterobacter_phage	87.7	3.7e-133
AYQ06165.1|1406399_1406747_+	DUF1064 domain-containing protein	NA	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	82.6	6.5e-50
AYQ06166.1|1406939_1407350_+	hypothetical protein	NA	A0A2P1MXC5	Escherichia_phage	45.1	4.3e-16
AYQ06167.1|1407333_1407525_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ06168.1|1407521_1408166_+	hypothetical protein	NA	Q1MVG0	Enterobacteria_phage	79.3	8.0e-110
AYQ09852.1|1408459_1408927_+	hypothetical protein	NA	A0A2R2Z312	Escherichia_phage	51.7	1.3e-37
AYQ06169.1|1408926_1409220_+	hypothetical protein	NA	Q6UAT9	Klebsiella_phage	86.6	2.7e-44
AYQ06170.1|1409216_1409837_+	hypothetical protein	NA	Q1MVF7	Enterobacteria_phage	40.7	1.0e-29
AYQ09854.1|1409836_1410040_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ06171.1|1410032_1410371_+	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	80.0	1.8e-44
AYQ06172.1|1410467_1411952_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
AYQ06173.1|1411951_1412203_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ09853.1|1412355_1412613_+	lF-82	NA	NA	NA	NA	NA
AYQ06174.1|1412690_1413275_+|terminase	terminase small subunit	terminase	T1SBI8	Salmonella_phage	88.6	2.2e-90
AYQ06175.1|1413271_1414747_+|terminase	terminase	terminase	Q858H3	Salmonella_phage	93.1	6.4e-280
AYQ06176.1|1414790_1415162_-	hypothetical protein	NA	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	91.9	3.7e-59
AYQ06177.1|1415211_1415454_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ06178.1|1415915_1416122_+	hypothetical protein	NA	T1SA67	Salmonella_phage	88.2	4.8e-08
AYQ06179.1|1416136_1417819_+|tail	phage tail protein	tail	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	84.4	1.5e-264
AYQ06180.1|1417815_1418112_+	hypothetical protein	NA	T1SBI9	Salmonella_phage	70.4	1.2e-33
AYQ06181.1|1418114_1418795_+	peptidase	NA	G9L6C4	Escherichia_phage	84.0	6.1e-76
AYQ06182.1|1418809_1419796_+	hypothetical protein	NA	A0A193GZ49	Enterobacter_phage	94.2	2.5e-179
AYQ06183.1|1419849_1420287_+	hypothetical protein	NA	A0A193GYT9	Enterobacter_phage	91.7	1.3e-66
AYQ06184.1|1420297_1420639_+	hypothetical protein	NA	G9L6C7	Escherichia_phage	70.8	2.4e-36
AYQ06185.1|1420689_1421013_+	hypothetical protein	NA	G9L6C8	Escherichia_phage	85.0	5.3e-46
AYQ06186.1|1421012_1421618_+	hypothetical protein	NA	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	77.0	4.0e-87
AYQ06187.1|1421617_1424095_+	hypothetical protein	NA	Q858G3	Salmonella_phage	84.4	0.0e+00
AYQ06188.1|1424094_1424559_+	hypothetical protein	NA	Q858G2	Salmonella_phage	81.2	1.5e-70
AYQ06189.1|1424558_1425098_+	hypothetical protein	NA	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	80.0	8.0e-71
AYQ06190.1|1425108_1427643_+	hypothetical protein	NA	Q858G0	Salmonella_phage	84.1	0.0e+00
AYQ06191.1|1427642_1429553_+	hypothetical protein	NA	Q858F9	Salmonella_phage	82.7	5.4e-287
AYQ06192.1|1429552_1432309_+	hypothetical protein	NA	Q858F8	Salmonella_phage	95.4	0.0e+00
AYQ06193.1|1432305_1432500_+	hypothetical protein	NA	Q858F7	Salmonella_phage	67.2	6.5e-15
AYQ06194.1|1432534_1432687_-	transmembrane anchored protein	NA	G9L6D9	Escherichia_phage	83.7	2.5e-14
AYQ06195.1|1432785_1433082_-	hypothetical protein	NA	T1SA06	Salmonella_phage	63.9	6.9e-24
AYQ06196.1|1435909_1436173_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ06197.1|1436213_1437134_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ06198.1|1437460_1438441_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AYQ06199.1|1439309_1440572_-|transposase	IS1380 family transposase ISEc9	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
AYQ06200.1|1441680_1442997_+	right-handed parallel beta-helix repeat-containing protein	NA	A0A0K2FI18	Enterobacter_phage	32.3	2.3e-34
AYQ06201.1|1443083_1443488_+	hypothetical protein	NA	T1SA79	Salmonella_phage	81.1	8.7e-54
AYQ06202.1|1443474_1443780_+|holin	phage holin family protein	holin	A0A193GYK3	Enterobacter_phage	81.4	2.7e-39
AYQ06203.1|1443769_1444399_+	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	76.9	1.8e-90
AYQ06204.1|1444395_1444896_+	DUF2514 domain-containing protein	NA	Q858E9	Salmonella_phage	76.9	1.3e-59
AYQ06205.1|1445082_1446951_-	phosphatase	NA	A0A2P0VMN7	Tetraselmis_virus	22.6	2.6e-07
>prophage 4
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	1779302	1786207	5434589		Planktothrix_phage(33.33%)	6	NA	NA
AYQ09867.1|1779302_1780166_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	7.4e-10
AYQ06492.1|1780176_1780950_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
AYQ09868.1|1781190_1782084_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
AYQ06493.1|1782329_1783691_-	U32 family peptidase	NA	Q6DW11	Phage_TP	94.8	1.8e-207
AYQ06494.1|1784009_1784732_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
AYQ06495.1|1784728_1786207_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	1.9e-29
>prophage 5
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	1830752	1842427	5434589	transposase	Escherichia_phage(33.33%)	10	NA	NA
AYQ06525.1|1830752_1832159_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.7	4.7e-38
AYQ06526.1|1832385_1833801_+	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	31.0	1.4e-53
AYQ06527.1|1833822_1835193_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	25.9	6.4e-32
AYQ09871.1|1835347_1836412_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.7	9.8e-105
AYQ06528.1|1836425_1837295_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	66.7	1.7e-110
AYQ06529.1|1837326_1838217_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.2	2.8e-28
AYQ06530.1|1838231_1838786_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	58.2	2.9e-52
AYQ06531.1|1838965_1840132_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	54.7	9.1e-112
AYQ06532.1|1840494_1841406_+	acyltransferase	NA	NA	NA	NA	NA
AYQ06533.1|1841446_1842427_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
>prophage 6
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	2829689	2840576	5434589		Escherichia_phage(87.5%)	9	NA	NA
AYQ07446.1|2829689_2832797_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
AYQ07447.1|2832851_2834117_+	MFS transporter	NA	NA	NA	NA	NA
AYQ07448.1|2834147_2835236_-	chromosome segregation protein SMC	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
AYQ07449.1|2835322_2835583_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	97.7	3.5e-40
AYQ07450.1|2835880_2836741_+	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
AYQ07451.1|2836761_2837523_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
AYQ07452.1|2837783_2838686_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.3	7.7e-159
AYQ07453.1|2838697_2839963_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.5	6.6e-233
AYQ07454.1|2839955_2840576_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 7
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	3023978	3098585	5434589	lysis,head,tail,transposase,plate,terminase	uncultured_Caudovirales_phage(32.08%)	87	NA	NA
AYQ07622.1|3023978_3025064_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AYQ07623.1|3025027_3026782_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AYQ07624.1|3028453_3031879_-	type VI secretion protein VasK	NA	NA	NA	NA	NA
AYQ07625.1|3031862_3033002_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07626.1|3032998_3033256_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
AYQ07627.1|3033300_3035718_-	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
AYQ07628.1|3035705_3036236_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AYQ07629.1|3036303_3036834_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AYQ07630.1|3036902_3037433_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AYQ07631.1|3037500_3038031_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AYQ07632.1|3038099_3038630_-	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AYQ07633.1|3038693_3039473_-	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
AYQ07634.1|3039473_3041852_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	33.8	9.2e-18
AYQ07635.1|3041844_3044499_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	33.4	2.5e-96
AYQ07636.1|3044763_3045255_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
AYQ07637.1|3045259_3046966_-	OmpA family protein	NA	NA	NA	NA	NA
AYQ07638.1|3046962_3047652_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
AYQ09926.1|3047648_3048989_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AYQ07639.1|3049001_3050546_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AYQ07640.1|3050588_3051080_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AYQ07641.1|3051549_3052530_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
AYQ07642.1|3052587_3052797_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07643.1|3053125_3053374_+	DinI family protein	NA	S5MQI1	Escherichia_phage	70.4	1.4e-25
AYQ07644.1|3053596_3053881_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07645.1|3053958_3055443_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
AYQ07646.1|3055442_3055694_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07647.1|3055895_3056105_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07648.1|3056101_3056833_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ09927.1|3056843_3057572_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07649.1|3059922_3060120_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07650.1|3060119_3060986_-	hypothetical protein	NA	A0A2H4IYR0	uncultured_Caudovirales_phage	64.5	1.9e-34
AYQ07651.1|3060985_3061759_-	DUF2612 domain-containing protein	NA	A0A2H4J1A9	uncultured_Caudovirales_phage	54.4	2.8e-77
AYQ07652.1|3061755_3062952_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	72.9	3.9e-158
AYQ07653.1|3062951_3063305_-	hypothetical protein	NA	A0A2H4J629	uncultured_Caudovirales_phage	80.3	2.3e-50
AYQ07654.1|3063306_3063960_-	hypothetical protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	63.5	1.0e-59
AYQ07655.1|3064013_3064580_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07656.1|3064616_3064802_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07657.1|3064854_3065196_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	46.6	1.8e-23
AYQ07658.1|3065195_3066218_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	54.2	9.2e-100
AYQ07659.1|3066220_3066523_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	55.2	2.0e-26
AYQ07660.1|3066523_3067123_-	hypothetical protein	NA	A0A2H4J1B3	uncultured_Caudovirales_phage	57.6	9.9e-54
AYQ07661.1|3067122_3069126_-	lytic transglycosylase domain-containing protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	63.6	1.2e-247
AYQ07662.1|3069115_3069268_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	88.0	7.6e-19
AYQ07663.1|3069303_3069729_-	hypothetical protein	NA	A0A2H4J2V6	uncultured_Caudovirales_phage	63.4	2.6e-40
AYQ07664.1|3069732_3070173_-	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	80.1	3.3e-62
AYQ07665.1|3070183_3071329_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	76.9	6.3e-166
AYQ07666.1|3071332_3071773_-	hypothetical protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	51.7	1.6e-40
AYQ07667.1|3071867_3072254_-|head,tail	head-tail adaptor	head,tail	A0A2H4J1A4	uncultured_Caudovirales_phage	78.2	1.1e-48
AYQ07668.1|3072253_3072760_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07669.1|3072756_3073176_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	60.7	3.3e-40
AYQ07670.1|3073144_3073426_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07671.1|3073465_3074407_-	DUF2184 domain-containing protein	NA	A0A2H4J191	uncultured_Caudovirales_phage	77.1	1.7e-137
AYQ07672.1|3074418_3074913_-	hypothetical protein	NA	A0A2H4JHM9	uncultured_Caudovirales_phage	62.7	4.2e-50
AYQ07673.1|3074916_3076119_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	54.1	2.6e-106
AYQ07674.1|3076170_3076719_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	56.3	3.0e-49
AYQ07675.1|3076774_3078226_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	68.8	3.8e-192
AYQ07676.1|3078463_3079864_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.0	9.4e-188
AYQ07677.1|3079814_3080567_-	hypothetical protein	NA	A0A077KBY7	Edwardsiella_phage	66.0	4.0e-12
AYQ07678.1|3080668_3080989_-	negative regulator GrlR	NA	NA	NA	NA	NA
AYQ07679.1|3081081_3081339_-	Rz1 lytic protein	NA	S5FXQ4	Shigella_phage	70.9	2.3e-23
AYQ07680.1|3081223_3081613_-	lipase chaperone	NA	A0A192Y6H8	Salmonella_phage	49.2	9.4e-21
AYQ07681.1|3081609_3082140_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	77.1	2.7e-79
AYQ07682.1|3082142_3082391_-|lysis	lysis protein	lysis	NA	NA	NA	NA
AYQ07683.1|3082796_3083579_-	antitermination protein	NA	F1C595	Cronobacter_phage	76.8	7.2e-113
AYQ07684.1|3083575_3084052_-	hypothetical protein	NA	A0A286N2Q1	Klebsiella_phage	100.0	1.8e-90
AYQ07685.1|3084048_3085011_-	DNA primase	NA	A0A286N2Q0	Klebsiella_phage	99.4	4.8e-183
AYQ07686.1|3085012_3086671_-	DEAD/DEAH box helicase	NA	A0A286N2P9	Klebsiella_phage	96.0	0.0e+00
AYQ07687.1|3086979_3087273_-	hypothetical protein	NA	A0A286S2B5	Klebsiella_phage	97.6	2.8e-38
AYQ07688.1|3087247_3087469_-	XRE family transcriptional regulator	NA	A0A286S2C1	Klebsiella_phage	100.0	3.0e-32
AYQ07689.1|3087566_3088235_+	LexA family transcriptional regulator	NA	A0A286S2B2	Klebsiella_phage	99.5	2.4e-125
AYQ07690.1|3088405_3088720_+	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	100.0	1.0e-49
AYQ07691.1|3088712_3088901_+	hypothetical protein	NA	A0A286S1P8	Klebsiella_phage	100.0	4.6e-26
AYQ07692.1|3089070_3089436_+	hypothetical protein	NA	A0A286S1Q6	Klebsiella_phage	99.2	6.9e-58
AYQ07693.1|3089428_3089683_+	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	97.6	3.1e-41
AYQ07694.1|3089869_3090295_+	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	77.9	3.5e-53
AYQ07695.1|3090291_3090486_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07696.1|3090482_3091310_+	SPFH/Band 7/PHB domain protein	NA	Q8W654	Enterobacteria_phage	84.0	5.5e-111
AYQ07697.1|3091414_3091933_+	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	98.8	1.7e-94
AYQ07698.1|3091938_3092649_+	DNA-binding protein	NA	A0A286S260	Klebsiella_phage	88.3	2.1e-111
AYQ07699.1|3092638_3092863_+	hypothetical protein	NA	A0A286S2B3	Klebsiella_phage	89.2	3.1e-29
AYQ07700.1|3092859_3093072_+	hypothetical protein	NA	A0A286S2B6	Klebsiella_phage	98.6	3.4e-33
AYQ07701.1|3093068_3093548_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07702.1|3093726_3093969_+	AlpA family transcriptional regulator	NA	A0A0M4RTZ2	Salmonella_phage	73.8	2.2e-20
AYQ07703.1|3093949_3095131_-	DUF4102 domain-containing protein	NA	A0A0M4QX09	Salmonella_phage	84.2	5.6e-202
AYQ07704.1|3095327_3095876_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
AYQ07705.1|3096074_3097607_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	30.0	1.1e-21
AYQ07706.1|3097823_3098585_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.5	2.4e-20
>prophage 8
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	3261666	3349545	5434589	integrase,head,tRNA,tail,portal,capsid,holin,terminase	Klebsiella_phage(45.45%)	96	3288469:3288483	3347356:3347370
AYQ07859.1|3261666_3262167_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
AYQ07860.1|3262283_3262730_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
AYQ09933.1|3262713_3263505_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYQ07861.1|3263606_3264791_+	MFS transporter	NA	NA	NA	NA	NA
AYQ07862.1|3264822_3265515_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07863.1|3265660_3266170_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
AYQ07864.1|3266156_3266513_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
AYQ07865.1|3266502_3266742_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
AYQ07866.1|3267042_3268056_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.4e-12
AYQ07867.1|3268113_3268215_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ09934.1|3268214_3268289_+	protein YoaJ	NA	NA	NA	NA	NA
AYQ07868.1|3268406_3268532_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07869.1|3268591_3268855_-	DUF2534 family protein	NA	NA	NA	NA	NA
AYQ07870.1|3268985_3269624_-	leucine efflux protein	NA	NA	NA	NA	NA
AYQ07871.1|3269713_3270628_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
AYQ07872.1|3270843_3271035_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07873.1|3271289_3272333_-	type II asparaginase	NA	NA	NA	NA	NA
AYQ07874.1|3272635_3273844_+	HD domain-containing protein	NA	NA	NA	NA	NA
AYQ07875.1|3273917_3275702_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
AYQ07876.1|3275708_3276599_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ07877.1|3276719_3278228_+	UbiD family decarboxylase	NA	NA	NA	NA	NA
AYQ07878.1|3278538_3279225_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AYQ07879.1|3279622_3279802_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07880.1|3279841_3280474_-	DNA-binding protein	NA	NA	NA	NA	NA
AYQ07881.1|3281040_3281238_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07882.1|3281353_3282364_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AYQ07883.1|3282360_3283767_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AYQ07884.1|3283822_3284710_-	manganese catalase family protein	NA	NA	NA	NA	NA
AYQ07885.1|3284726_3285233_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
AYQ07886.1|3285259_3285754_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
AYQ07887.1|3285844_3286030_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA	NA
AYQ07888.1|3286651_3287845_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
AYQ07889.1|3287957_3288185_+	DUF1272 domain-containing protein	NA	NA	NA	NA	NA
3288469:3288483	attL	TGGCTGGCGTTCTTT	NA	NA	NA	NA
AYQ07890.1|3288621_3288945_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AYQ07891.1|3288937_3289330_+	amino acid-binding protein	NA	NA	NA	NA	NA
AYQ07892.1|3289326_3290040_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ07893.1|3290312_3290465_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
AYQ07894.1|3290619_3292116_-|tail	tail fiber domain-containing protein	tail	A0A0P0IDN1	Klebsiella_phage	63.7	1.4e-125
AYQ07895.1|3292184_3304889_-	DUF1983 domain-containing protein	NA	Q6UAW1	Klebsiella_phage	47.1	0.0e+00
AYQ07896.1|3304951_3305545_-|tail	tail assembly protein	tail	K7PHE5	Enterobacteria_phage	76.6	8.0e-80
AYQ07897.1|3305571_3305994_-	hypothetical protein	NA	J9Q806	Salmonella_phage	50.0	5.9e-29
AYQ07898.1|3306035_3306746_-	peptidase P60	NA	Q6UAW4	Klebsiella_phage	90.3	1.9e-136
AYQ07899.1|3306747_3307503_-|tail	phage minor tail protein L	tail	Q6UAW5	Klebsiella_phage	80.5	4.6e-125
AYQ07900.1|3307499_3307838_-|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	88.4	1.4e-57
AYQ07901.1|3307837_3311173_-|tail	phage tail tape measure protein	tail	Q6UAW7	Klebsiella_phage	88.3	0.0e+00
AYQ07902.1|3311172_3311391_-	hypothetical protein	NA	Q6UAW9	Klebsiella_phage	90.5	5.4e-34
AYQ07903.1|3311405_3311771_-|tail	phage tail protein	tail	Q6UAW8	Klebsiella_phage	89.3	1.6e-51
AYQ07904.1|3311828_3312290_-|tail	phage tail protein	tail	Q6UAX0	Klebsiella_phage	83.7	7.8e-67
AYQ07905.1|3312321_3312723_-	hypothetical protein	NA	Q6UAX1	Klebsiella_phage	94.0	2.3e-62
AYQ07906.1|3312719_3313109_-	hypothetical protein	NA	Q6UAX2	Klebsiella_phage	86.0	9.6e-58
AYQ07907.1|3313089_3313428_-|head,tail	head-tail adaptor protein	head,tail	Q6UAX3	Klebsiella_phage	90.2	2.8e-53
AYQ07908.1|3313424_3313742_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q6UAX4	Klebsiella_phage	89.8	1.5e-45
AYQ07909.1|3313722_3313983_-	hypothetical protein	NA	Q6UAX5	Klebsiella_phage	60.5	7.4e-22
AYQ07910.1|3314041_3315328_-|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	89.0	9.8e-216
AYQ07911.1|3315405_3316326_-	S49 family peptidase	NA	Q6UAX7	Klebsiella_phage	88.2	9.6e-149
AYQ07912.1|3316362_3317622_-|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	89.8	1.8e-222
AYQ07913.1|3317621_3317801_-	hypothetical protein	NA	Q6UAX9	Klebsiella_phage	57.6	3.1e-11
AYQ07914.1|3317794_3319516_-|terminase	terminase large subunit	terminase	Q7Y413	Yersinia_phage	57.4	1.5e-190
AYQ07915.1|3319515_3319950_-|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	61.9	9.4e-30
AYQ07916.1|3320198_3320630_-	hypothetical protein	NA	Q6UAS0	Klebsiella_phage	61.6	1.8e-41
AYQ07917.1|3320626_3320950_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07918.1|3320901_3321264_-	HNH endonuclease	NA	Q6UAS2	Klebsiella_phage	83.3	1.2e-57
AYQ07919.1|3321590_3321815_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07920.1|3321853_3322306_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07921.1|3323240_3323591_-	hypothetical protein	NA	R9TPM9	Aeromonas_phage	38.1	7.9e-11
AYQ07922.1|3323587_3324085_-	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	84.6	1.1e-77
AYQ07923.1|3324084_3324300_-|holin	holin	holin	A5LH82	Enterobacteria_phage	88.7	2.7e-30
AYQ07924.1|3326551_3327154_-	hypothetical protein	NA	H9C175	Pectobacterium_phage	68.6	1.1e-76
AYQ07925.1|3327170_3328202_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	49.6	4.7e-96
AYQ07926.1|3328201_3328405_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07927.1|3328401_3328794_-	DNA-binding protein	NA	K7PHB4	Enterobacterial_phage	36.6	8.0e-12
AYQ07928.1|3328834_3329125_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	56.9	8.0e-17
AYQ07929.1|3329136_3329370_-	DinI family protein	NA	K7PM44	Enterobacteria_phage	71.1	3.7e-25
AYQ07930.1|3329448_3330933_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
AYQ07931.1|3330932_3331184_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07932.1|3331773_3333135_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
AYQ07933.1|3333308_3334022_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ09935.1|3334373_3335243_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07934.1|3335331_3336723_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07935.1|3337071_3337512_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07936.1|3337525_3337990_-	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	72.2	4.1e-63
AYQ09936.1|3337982_3338987_-	DNA-binding protein	NA	A0A0U2RT81	Escherichia_phage	40.0	1.0e-31
AYQ07937.1|3339046_3339601_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07938.1|3339603_3339828_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	62.5	1.3e-19
AYQ07939.1|3339916_3340354_+	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	62.2	1.3e-39
AYQ07940.1|3340675_3340990_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ07941.1|3341152_3341371_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ07942.1|3341380_3341575_+	DUF1482 family protein	NA	NA	NA	NA	NA
AYQ07943.1|3341617_3341962_+	transcriptional regulator	NA	NA	NA	NA	NA
AYQ07944.1|3342103_3344242_+	exonuclease	NA	S4TNL0	Salmonella_phage	42.7	5.6e-99
AYQ07945.1|3344294_3344540_+	excisionase	NA	NA	NA	NA	NA
AYQ07946.1|3344520_3345648_+|integrase	integrase	integrase	O21925	Phage_21	58.4	4.4e-119
AYQ07947.1|3345765_3347016_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
AYQ07948.1|3347256_3347907_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
3347356:3347370	attR	AAAGAACGCCAGCCA	NA	NA	NA	NA
AYQ07949.1|3347923_3348382_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AYQ09937.1|3348438_3349545_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 9
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	3459120	3515279	5434589	protease,integrase,head,tail,portal,plate,capsid,terminase	Enterobacteria_phage(40.0%)	63	3457280:3457300	3491804:3491824
3457280:3457300	attL	AACCCGGAGTGCTCCGGGTTT	NA	NA	NA	NA
AYQ08053.1|3459120_3460275_-	phage late control D family protein	NA	B9A7A9	Serratia_phage	77.2	6.6e-171
AYQ08054.1|3460426_3461608_+|tail	phage tail protein	tail	A0A0A7NV69	Enterobacteria_phage	69.4	8.0e-156
AYQ08055.1|3461608_3462124_+|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	70.0	2.6e-63
AYQ08056.1|3462175_3462475_+|tail	phage tail assembly protein	tail	B9A7B2	Serratia_phage	72.7	2.9e-30
AYQ08057.1|3462495_3462648_+|tail	GpE family phage tail protein	tail	O80316	Escherichia_phage	71.4	1.5e-11
AYQ08058.1|3462637_3465373_+|tail	phage tail tape measure protein	tail	B9A7B3	Serratia_phage	80.6	2.0e-242
AYQ08059.1|3465384_3465873_+|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	59.9	2.9e-51
AYQ08060.1|3465970_3467047_-|tail	phage tail protein	tail	Q37842	Escherichia_phage	48.3	2.3e-32
AYQ08061.1|3467058_3467802_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08062.1|3467807_3470072_-	hypothetical protein	NA	B5TAB2	Burkholderia_phage	39.7	5.7e-102
AYQ08063.1|3470073_3470676_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	44.8	1.8e-42
AYQ08064.1|3470668_3471568_-|plate	baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	62.2	6.2e-92
AYQ08065.1|3471554_3471923_-|plate	baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	57.4	2.3e-29
AYQ08066.1|3471919_3472504_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	61.4	8.7e-63
AYQ08067.1|3472503_3473145_-	phage virion morphogenesis protein	NA	A0A0M4RCU1	Salmonella_phage	49.8	1.4e-45
AYQ08068.1|3473141_3473600_-|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	46.8	3.1e-31
AYQ08069.1|3473596_3473860_-	peptidase	NA	NA	NA	NA	NA
AYQ08070.1|3473744_3474140_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
AYQ08071.1|3474136_3474688_-	lysozyme	NA	Q1I0Z1	Pasteurella_virus	42.5	6.8e-33
AYQ08072.1|3474684_3474966_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08073.1|3474956_3475157_-|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	64.6	3.0e-15
AYQ08074.1|3475156_3475654_-|head	head completion/stabilization protein	head	B9A7B7	Serratia_phage	69.7	2.2e-59
AYQ08075.1|3475756_3476617_-|terminase	terminase	terminase	B9A7B6	Serratia_phage	68.4	1.0e-83
AYQ08076.1|3476663_3477713_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M3ULA3	Salmonella_phage	53.9	2.3e-106
AYQ08077.1|3477736_3478570_-|capsid	phage capsid protein	capsid	A0A0A7NRY7	Enterobacteria_phage	65.3	6.5e-96
AYQ08078.1|3478730_3480452_+	oxidoreductase	NA	A0A0A7NV54	Enterobacteria_phage	66.5	4.3e-227
AYQ08079.1|3480472_3481507_+|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	68.6	2.0e-139
AYQ09944.1|3481914_3482229_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08080.1|3482501_3482909_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08081.1|3483080_3485675_-	replication endonuclease	NA	A0A0M4RTM8	Salmonella_phage	51.7	1.1e-192
AYQ08082.1|3485667_3486684_-	DNA cytosine methyltransferase	NA	Q6J1P4	Burkholderia_virus	54.8	2.4e-92
AYQ08083.1|3486985_3487954_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4QWR0	Salmonella_phage	49.1	3.1e-73
AYQ08084.1|3487962_3488541_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	39.5	2.7e-32
AYQ08085.1|3488537_3488762_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08086.1|3488829_3489102_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08087.1|3489117_3489504_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ09945.1|3489520_3489718_-	DUF4761 domain-containing protein	NA	NA	NA	NA	NA
AYQ08088.1|3489909_3490242_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08089.1|3490336_3490639_+	XRE family transcriptional regulator	NA	Q1JS63	Enterobacteria_phage	61.0	2.6e-26
AYQ08090.1|3490726_3491734_+|integrase	integrase	integrase	A0A0M4RTQ0	Salmonella_phage	52.1	7.6e-99
AYQ08091.1|3491830_3493078_-	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA	NA
3491804:3491824	attR	AACCCGGAGTGCTCCGGGTTT	NA	NA	NA	NA
AYQ08092.1|3493230_3493680_+	transcriptional regulator	NA	NA	NA	NA	NA
AYQ08093.1|3493795_3494584_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYQ08094.1|3494604_3494826_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08095.1|3495082_3495205_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08096.1|3495323_3496715_-	APC family permease	NA	NA	NA	NA	NA
AYQ08097.1|3496704_3496896_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08098.1|3497068_3498490_-	glutamine synthetase	NA	NA	NA	NA	NA
AYQ08099.1|3498703_3499468_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA	NA
AYQ08100.1|3499493_3500051_+	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA	NA
AYQ08101.1|3500371_3501859_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA	NA
AYQ08102.1|3501861_3503142_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AYQ08103.1|3503138_3504080_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ08104.1|3504183_3505269_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
AYQ08105.1|3505773_3507381_+	BCCT family transporter	NA	NA	NA	NA	NA
AYQ08106.1|3507417_3508542_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AYQ08107.1|3508560_3510009_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYQ08108.1|3510066_3511032_+	oxidoreductase	NA	NA	NA	NA	NA
AYQ08109.1|3511201_3511390_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08110.1|3511454_3511742_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08111.1|3511720_3512341_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AYQ08112.1|3512697_3514350_-	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA	NA
AYQ08113.1|3514619_3515279_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	46.6	3.2e-37
>prophage 10
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	3600048	3696109	5434589	lysis,protease,integrase,tRNA,tail,head,transposase,portal,plate,capsid	Salmonella_phage(55.0%)	99	3655574:3655592	3696184:3696202
AYQ08182.1|3600048_3601341_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.7	7.3e-94
AYQ08183.1|3601431_3602775_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.8	7.3e-81
AYQ08184.1|3602783_3603395_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AYQ08185.1|3603517_3607771_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.2	5.2e-88
AYQ08186.1|3607906_3608401_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
AYQ08187.1|3608906_3609902_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.0	3.3e-62
AYQ08188.1|3610016_3611783_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	25.9	2.3e-21
AYQ08189.1|3611783_3613505_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
AYQ08190.1|3613549_3614251_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AYQ08191.1|3614604_3614823_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AYQ08192.1|3614943_3617223_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
AYQ08193.1|3617253_3617571_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
AYQ08194.1|3617896_3618118_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
AYQ08195.1|3618194_3620135_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
AYQ08196.1|3620131_3621247_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
AYQ08197.1|3621393_3623052_-	ATP-dependent endonuclease	NA	NA	NA	NA	NA
AYQ08198.1|3623471_3624167_+	aquaporin Z	NA	NA	NA	NA	NA
AYQ08199.1|3624282_3625182_+	lysine exporter LysO family protein	NA	NA	NA	NA	NA
AYQ09949.1|3625325_3626978_+	hydroxylamine reductase	NA	NA	NA	NA	NA
AYQ08200.1|3626988_3627957_+	NADH oxidoreductase	NA	NA	NA	NA	NA
AYQ08201.1|3627907_3628111_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08202.1|3628168_3628603_-	DoxX family protein	NA	NA	NA	NA	NA
AYQ09950.1|3628754_3630473_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA	NA
AYQ08203.1|3630511_3631513_+	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
AYQ08204.1|3631523_3632966_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYQ08205.1|3633053_3634067_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYQ08206.1|3634063_3634894_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	31.6	4.1e-05
AYQ08207.1|3634925_3636065_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AYQ08208.1|3636117_3636297_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08209.1|3636942_3637458_+	lipoprotein	NA	NA	NA	NA	NA
AYQ08210.1|3637684_3638413_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	37.1	1.2e-29
AYQ09951.1|3638433_3639165_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYQ08211.1|3639171_3639888_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
AYQ08212.1|3639887_3640556_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
AYQ08213.1|3640739_3641471_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYQ08214.1|3641513_3642986_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.8	7.9e-28
AYQ08215.1|3642982_3643699_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.9	2.1e-34
AYQ08216.1|3643777_3644905_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A2K5B251	Erysipelothrix_phage	25.6	1.3e-19
AYQ08217.1|3644946_3645435_-	DUF2593 family protein	NA	NA	NA	NA	NA
AYQ08218.1|3645492_3646338_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
AYQ08219.1|3646334_3647288_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
AYQ09952.1|3647298_3648432_-	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.9	2.2e-30
AYQ08220.1|3648595_3649708_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
AYQ08221.1|3650056_3650536_-	YbjN domain-containing protein	NA	NA	NA	NA	NA
AYQ08222.1|3650624_3651527_-	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	35.3	2.0e-34
AYQ08223.1|3652348_3652636_-	DUF1418 family protein	NA	NA	NA	NA	NA
AYQ08224.1|3652838_3653102_+	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	73.1	1.6e-27
AYQ08225.1|3653108_3653492_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ09953.1|3653758_3655444_+	transporter	NA	NA	NA	NA	NA
3655574:3655592	attL	ATGGGTTTTTTGTTGCCTG	NA	NA	NA	NA
AYQ08226.1|3655663_3655882_-	transcriptional regulator	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYQ08227.1|3655973_3657074_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	87.4	4.9e-176
AYQ08228.1|3657070_3657556_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	75.6	7.2e-63
AYQ08229.1|3657552_3660180_-|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	42.0	5.6e-117
AYQ08230.1|3660172_3660292_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
AYQ08231.1|3660306_3660606_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	79.0	3.7e-33
AYQ08232.1|3660658_3661174_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	85.4	1.3e-81
AYQ08233.1|3661183_3662356_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	93.3	1.9e-210
AYQ08234.1|3662494_3663571_-|tail	phage tail protein	tail	Q37842	Escherichia_phage	44.8	1.2e-25
AYQ08235.1|3663600_3663804_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08236.1|3663800_3664532_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08237.1|3664535_3667487_-	hypothetical protein	NA	A0A2H4N7A3	Pectobacterium_phage	50.9	1.2e-06
AYQ08238.1|3667488_3668088_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	60.5	1.3e-58
AYQ08239.1|3668080_3668989_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	66.9	7.6e-106
AYQ08240.1|3668975_3669338_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	83.9	4.9e-48
AYQ08241.1|3669334_3669907_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	72.3	4.7e-77
AYQ08242.1|3670266_3671247_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AYQ08243.1|3671384_3671894_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08244.1|3671890_3672337_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	71.2	2.2e-50
AYQ08245.1|3672329_3672761_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	82.5	9.9e-64
AYQ08246.1|3672856_3673285_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	77.9	9.6e-51
AYQ08247.1|3673281_3673665_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	42.0	2.1e-17
AYQ08248.1|3673669_3674179_-	lysozyme	NA	E5G6N1	Salmonella_phage	83.4	2.1e-81
AYQ08249.1|3674159_3674375_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	90.1	3.6e-30
AYQ08250.1|3674378_3674582_-|tail	phage tail protein	tail	A0A1S6KZY4	Salmonella_phage	88.1	1.3e-29
AYQ08251.1|3674581_3675046_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	8.4e-77
AYQ08252.1|3675141_3675792_-	hypothetical protein	NA	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYQ08253.1|3675795_3676854_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.1e-180
AYQ08254.1|3676870_3677704_-|capsid	capsid protein	capsid	A0A1S6KZW9	Salmonella_phage	88.8	6.3e-123
AYQ08255.1|3677846_3679613_+	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	99.0	0.0e+00
AYQ08256.1|3679612_3680638_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.7	7.6e-171
AYQ08257.1|3680699_3682442_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08258.1|3682717_3683395_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08259.1|3683509_3683815_-	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
AYQ09954.1|3683753_3683942_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
AYQ08260.1|3684042_3685527_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
AYQ08261.1|3685526_3685778_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08262.1|3686005_3688420_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYQ08263.1|3688416_3689274_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.4	2.0e-156
AYQ08264.1|3689270_3689498_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	6.0e-36
AYQ08265.1|3689497_3689731_-	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	96.1	4.1e-32
AYQ08266.1|3689798_3690140_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	99.1	4.6e-56
AYQ08267.1|3690103_3690304_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	97.0	1.6e-32
AYQ08268.1|3690311_3690821_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYQ08269.1|3690853_3691075_-	regulator	NA	NA	NA	NA	NA
AYQ08270.1|3691220_3692099_+	Repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	39.9	1.7e-30
AYQ08271.1|3692110_3693055_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08272.1|3693153_3694638_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
AYQ08273.1|3694637_3694889_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ08274.1|3695056_3696109_+|integrase	site-specific integrase	integrase	A0A218M4I3	Erwinia_phage	57.0	1.0e-106
3696184:3696202	attR	ATGGGTTTTTTGTTGCCTG	NA	NA	NA	NA
>prophage 11
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	4331221	4342874	5434589		Enterobacteria_phage(70.0%)	13	NA	NA
AYQ08835.1|4331221_4332325_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.5	4.8e-62
AYQ08836.1|4332335_4333589_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	44.9	8.9e-89
AYQ08837.1|4333941_4335132_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	62.7	6.4e-145
AYQ08838.1|4335119_4336070_+	cobyrinic acid a,c-diamide synthase	NA	A0A1X9IGI7	Lactococcus_phage	27.1	1.2e-13
AYQ08839.1|4336069_4336495_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08840.1|4337062_4337629_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.8	9.7e-59
AYQ08841.1|4337646_4337892_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	56.8	5.5e-19
AYQ08842.1|4337888_4338626_-	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	59.4	1.9e-70
AYQ08843.1|4339167_4339434_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
AYQ08844.1|4339430_4339988_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.8e-33
AYQ08845.1|4339984_4340212_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08846.1|4340208_4340529_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ08847.1|4340540_4342874_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	82.2	0.0e+00
>prophage 12
CP033405	Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome	5434589	4805147	4814672	5434589	transposase	Enterobacteria_phage(83.33%)	10	NA	NA
AYQ09246.1|4805147_4807481_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	83.9	0.0e+00
AYQ09247.1|4807495_4807816_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ09248.1|4807812_4808040_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ09249.1|4808036_4808585_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	69.4	1.1e-30
AYQ09250.1|4809408_4810146_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	59.4	1.1e-70
AYQ09251.1|4810142_4810388_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	56.8	5.5e-19
AYQ09252.1|4810405_4810972_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.8	9.7e-59
AYQ09253.1|4811712_4812792_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ09254.1|4812792_4813329_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ09255.1|4813691_4814672_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
>prophage 1
CP033402	Klebsiella pneumoniae strain WCHKP115069 plasmid p1_115069, complete sequence	208288	1727	66699	208288	integrase,transposase,protease	uncultured_Caudovirales_phage(26.32%)	58	NA	NA
AYQ04389.1|1727_2468_-|integrase	site-specific integrase	integrase	I3WFA4	Macacine_betaherpesvirus	58.6	5.4e-25
AYQ04390.1|3611_4559_+	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	30.6	1.8e-12
AYQ04391.1|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AYQ04392.1|4961_5885_+|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	98.4	2.1e-175
AYQ04393.1|6557_6815_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04394.1|7434_8871_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AYQ04395.1|9853_11131_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
AYQ04589.1|11193_13191_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	9.7e-21
AYQ04590.1|14230_15438_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	63.2	1.7e-100
AYQ04396.1|16866_17298_-	silver-binding protein SilE	NA	NA	NA	NA	NA
AYQ04397.1|17548_19024_-	Cu(+)/Ag(+) sensor histidine kinase	NA	W8CYF6	Bacillus_phage	30.1	1.0e-27
AYQ04398.1|19016_19697_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.6	2.1e-31
AYQ04399.1|19886_21272_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
AYQ04400.1|21300_21654_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYQ04401.1|21767_23060_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYQ04402.1|23070_26217_+	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	22.5	4.0e-61
AYQ04403.1|26303_26744_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04404.1|26870_29318_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-84
AYQ04405.1|29358_29556_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
AYQ04406.1|29589_30327_-	peptidase M23	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	32.5	1.2e-11
AYQ04407.1|30615_31065_-	copper resistance protein	NA	NA	NA	NA	NA
AYQ04408.1|31298_33116_+	multicopper oxidase PcoA	NA	NA	NA	NA	NA
AYQ04409.1|33115_34012_+	copper resistance protein B	NA	NA	NA	NA	NA
AYQ04410.1|34051_34432_+	copper resistance system chaperone PcoC	NA	NA	NA	NA	NA
AYQ04411.1|34436_35366_+	copper resistance protein D	NA	NA	NA	NA	NA
AYQ04412.1|35420_36101_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
AYQ04413.1|36097_37498_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.3	4.1e-18
AYQ04414.1|37714_38149_+	copper-binding protein	NA	NA	NA	NA	NA
AYQ04591.1|38380_38560_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYQ04415.1|40302_40812_+	porin	NA	NA	NA	NA	NA
AYQ04416.1|40861_41359_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYQ04417.1|41690_42017_+	transcriptional regulator	NA	NA	NA	NA	NA
AYQ04592.1|42016_42727_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	77.0	2.9e-92
AYQ04418.1|42735_43281_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYQ04419.1|43356_43719_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA	NA
AYQ04420.1|45615_46152_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYQ04421.1|46184_46610_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	72.9	2.3e-52
AYQ04422.1|46622_47912_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.0	1.9e-171
AYQ04423.1|47959_49711_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
AYQ04424.1|49728_50091_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA	NA
AYQ04425.1|50140_50491_-	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	1.4e-23
AYQ04426.1|50848_51118_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04427.1|51105_51681_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04428.1|51711_52206_+	DNA-binding protein	NA	NA	NA	NA	NA
AYQ04429.1|52249_52618_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04430.1|52651_52855_+	hemolysin expression modulator Hha	NA	NA	NA	NA	NA
AYQ04431.1|52903_53161_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04432.1|53236_53491_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04433.1|53666_53933_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
AYQ04434.1|53920_54403_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYQ04593.1|54614_55961_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
AYQ04435.1|57803_58766_-|protease	Zn-dependent protease	protease	NA	NA	NA	NA
AYQ04436.1|58752_59502_-	diguanylate cyclase	NA	NA	NA	NA	NA
AYQ04437.1|59739_59937_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04438.1|59936_62732_-	heat shock survival AAA family ATPase ClpK	NA	K4FB40	Cronobacter_phage	41.0	5.2e-129
AYQ04439.1|62846_63416_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AYQ04594.1|63450_63732_-	DNA-binding protein	NA	A0A1B1IUF9	uncultured_Mediterranean_phage	38.2	5.2e-05
AYQ04440.1|65718_66699_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
>prophage 2
CP033402	Klebsiella pneumoniae strain WCHKP115069 plasmid p1_115069, complete sequence	208288	73168	98592	208288	transposase,integrase,protease	Escherichia_phage(50.0%)	29	75140:75199	87177:88514
AYQ04446.1|73168_73873_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
75140:75199	attL	TTAATGAGATGGTCACTCCCTCCTTCCCAGTACTATGCTGAGGACAGGCTTTCATTCGGA	NA	NA	NA	NA
AYQ04447.1|75207_76212_+|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
AYQ04448.1|76503_77172_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	99.5	1.9e-130
AYQ04449.1|77361_78177_-	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
AYQ04450.1|78327_79032_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ04451.1|79221_80037_-	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
AYQ04452.1|80187_80892_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ04453.1|81383_82397_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AYQ04454.1|82541_83039_+	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
AYQ04455.1|83150_83441_+	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
AYQ04456.1|83446_84238_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
AYQ04457.1|84401_84749_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
AYQ04458.1|84742_85582_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AYQ04459.1|85511_85691_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04460.1|85709_85982_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04461.1|86163_87168_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
AYQ04462.1|87395_88601_+	chromate efflux transporter	NA	NA	NA	NA	NA
87177:88514	attR	TCCGAATGAAAGCCTGTCCTCAGCATAGTACTGGGAAGGAGGGAGTGACCATCTCATTAAATAAAGCACGCTAAGCCGTAAGTAAGCGTGCTCCTGTGAAAGCCACAGCTAAAACTGCGTAGTACACATAGAGGTATTTTTTTCTAGATTTATATCGAATTTCGTTATCGAATTTCGCTTATTATTGATCAACTCGTTGCAGATCATGAAGGCGAAAGTATGACGAATAACCCTACCGATGACAGCAGACCATGGTCGGTCTTTCTTATTTTTCTGCGGCTTGGATTGACATCTTTTGGCGGCCCCATTGCGCACTTGGGCTACTTCCGCGCCGAATTTGTCACACGGCGGCGCTGGCTCTCCGAACGGAGCTATGCTGACTTGGTCGCGCTTTGTCAGTTCTTGCCAGGGCCTGCAAGCAGCCAGGTCGGCATAGCGGTAGGACTGTCTCGGGCTGGATACAGCGGGGCGCTGGCTGCTTGGGCTGGCTTCACGCTGCCGTCTGCCATAGCCTTGATCCTTTTTGCGCTCGGCATCTCCAGCTATGGCGATTACGTCTCGCAGGGCGCGTTGCATGGCTTAAAAGTGGTGGCTGTGGCCGTGGTCGCTCAAGCAGTATGGGGCATGGCGCGTAACCTATGCACGGATGGGCTGCGAGTCACCATCATGGCAATTGCTACCTGCGTCGTTTTACTTGTGCCGTCCGCGTGGGGACAGGTTGGCGTGATTGCTATCGCAGGCATCGCAGGCCGGTTATTGTTCAAGCCAGCGAAAGTTGTTGAGCATGACCCCCTACCTATCACGGTCAGTCACCGGGCCGGCGTGCTTTGGCTCTCGCTGTTCTTTGTCTTGCTGATTGGCCTGCCGGTGTTGGCCGAACTGATGCCAAGTCAAACCATGGCAATGGTGGATTCCTTCTATCGTGTCGGATCACTGGTGTTCGGCGGTGGTCACGTTGTGCTGCCATTACTGCAAGCCGAAGTGGTGCCCTCCGGCTGGGTCAACAATGAATCCTTTCTCGCGGGGTACGGGGCAGCTCAAGCGGTGCCCGGCCCTTTGTTCACGTTCGCCGCGTTTCTTGGTGCCTCGATGAACACCGCCCCGTCGGGCTGGATCGGCGGCATTGTGTGTCTGCTGGCTATCTTCGCGCCCTCGTTCTTGCTGGTCGTCGGATCAATGCCATTTTGGGAGCGTTTGCGCCGCAATACAGGCATCCAAGCTGCGCTGGCCGGGATCAATGCCGCTGTAGTCGGCTTGCTGCTGGCCGCGCTGTATCAGCCTGTATGGACTAGCGCCATCTTTCAGCCGCAAGACTTCGGCTTGGCATTAGTTGCCCTT	NA	NA	NA	NA
AYQ04463.1|88611_88917_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ04464.1|88932_89115_-	resolvase	NA	NA	NA	NA	NA
AYQ04465.1|89143_89908_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
AYQ04466.1|90098_90455_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04467.1|90400_90985_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ04468.1|90984_92223_-	MFS transporter	NA	NA	NA	NA	NA
AYQ04469.1|92219_93125_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
AYQ04470.1|93246_93951_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AYQ04471.1|94220_97118_+|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
AYQ04472.1|97254_97587_-	mRNA interferase PemK	NA	NA	NA	NA	NA
AYQ04473.1|97588_97846_-	antitoxin PemI	NA	NA	NA	NA	NA
AYQ04474.1|97938_98592_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
CP033404	Klebsiella pneumoniae strain WCHKP115069 plasmid pKPC2_115069, complete sequence	154986	1796	21170	154986	transposase,protease	Escherichia_phage(50.0%)	17	NA	NA
AYQ04621.1|1796_2450_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYQ04622.1|2542_2800_+	antitoxin PemI	NA	NA	NA	NA	NA
AYQ04623.1|2801_3134_+	mRNA interferase PemK	NA	NA	NA	NA	NA
AYQ04624.1|4444_5149_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ04625.1|6417_7299_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	NA	A0A1B0VBP7	Salmonella_phage	52.2	2.2e-73
AYQ04626.1|7574_8555_-|transposase	IS481-like element ISKpn27 family transposase	transposase	A8RHK4	Spiroplasma_virus	27.4	2.9e-10
AYQ04627.1|8677_9151_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	99.3	3.3e-76
AYQ04628.1|9190_9895_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ04629.1|10405_11281_+	class A extended-spectrum beta-lactamase CTX-M-65	NA	A0A1B0VBP7	Salmonella_phage	98.9	6.8e-152
AYQ04630.1|11360_12284_+|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	99.7	2.2e-177
AYQ04631.1|14034_14739_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ04632.1|15849_16554_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ04633.1|17231_17420_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04791.1|17511_18048_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	100.0	2.8e-84
AYQ04634.1|18230_19091_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
AYQ04635.1|19260_20016_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA	NA
AYQ04636.1|20465_21170_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
>prophage 2
CP033404	Klebsiella pneumoniae strain WCHKP115069 plasmid pKPC2_115069, complete sequence	154986	78242	92048	154986	transposase	Enterobacteria_phage(18.18%)	18	NA	NA
AYQ04696.1|78242_79223_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AYQ04801.1|79736_80132_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04697.1|80128_80740_+	DUF2913 family protein	NA	NA	NA	NA	NA
AYQ04698.1|80736_81687_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.6	6.6e-76
AYQ04699.1|81833_82034_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04700.1|82087_82720_-	LacI family DNA-binding transcriptional regulator	NA	A0A1V0E035	Clostridioides_phage	31.9	2.5e-07
AYQ04701.1|83082_84288_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	89.2	1.1e-205
AYQ04702.1|84284_85256_+	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	68.9	1.4e-113
AYQ04703.1|85391_86663_-	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.0	6.1e-154
AYQ04704.1|86662_87085_-	peptidase	NA	A0A1W6JNS2	Morganella_phage	51.5	3.1e-30
AYQ04705.1|87264_87936_-	DNA breaking-rejoining protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.7	5.1e-83
AYQ04706.1|88294_88972_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.9	1.6e-28
AYQ04707.1|88971_89193_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04708.1|89203_89623_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AYQ04709.1|89676_90456_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04710.1|90860_91367_+	antirestriction protein ArdA	NA	A0A1I9S7Y0	Rhodococcus_phage	31.8	4.8e-09
AYQ04711.1|91409_91601_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ04712.1|91787_92048_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	46.2	4.1e-12
>prophage 3
CP033404	Klebsiella pneumoniae strain WCHKP115069 plasmid pKPC2_115069, complete sequence	154986	123661	134820	154986		Escherichia_phage(50.0%)	11	NA	NA
AYQ04759.1|123661_124363_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.2	1.6e-26
AYQ04760.1|124799_125030_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04761.1|125092_125764_-	Mediator of plasmid stability	NA	NA	NA	NA	NA
AYQ04762.1|125766_126738_-	StbA family protein	NA	A0A222YXF2	Escherichia_phage	46.8	1.1e-73
AYQ04763.1|126986_128471_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
AYQ04764.1|128470_128722_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04765.1|128880_129312_+	peptidase	NA	A0A1W6JNS2	Morganella_phage	53.3	2.1e-29
AYQ04766.1|129311_130583_+	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.7	7.5e-152
AYQ04767.1|130664_131642_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	53.8	1.4e-86
AYQ04768.1|131638_132844_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.3	5.3e-163
AYQ04769.1|133953_134820_-	RepB family plasmid replication initiator protein	NA	A0A222YYK1	Escherichia_phage	31.1	1.5e-23
