The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	499447	508889	4750764		Enterobacteria_phage(85.71%)	10	NA	NA
AYQ00480.1|499447_500374_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
AYQ00481.1|500378_501110_+	ABC transporter permease	NA	NA	NA	NA	NA
AYQ00482.1|501090_501198_-	protein YohO	NA	NA	NA	NA	NA
AYQ00483.1|501257_501989_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
AYQ00484.1|502210_503896_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
AYQ00485.1|503892_504612_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYQ00486.1|504658_505129_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
AYQ00487.1|505169_505631_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
AYQ00488.1|505755_507756_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.3	0.0e+00
AYQ00489.1|507752_508889_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
>prophage 2
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	1470551	1481329	4750764	integrase	Enterobacteria_phage(40.0%)	11	1468524:1468547	1480032:1480055
1468524:1468547	attL	AACGGGCGTGTTATACGCCCGTTG	NA	NA	NA	NA
AYQ01339.1|1470551_1472507_-	AAA family ATPase	NA	K4I1H4	Acidithiobacillus_phage	28.6	7.5e-26
AYQ01340.1|1474871_1475411_-	regulator	NA	M9NZI6	Enterobacteria_phage	65.6	7.5e-61
AYQ01341.1|1475593_1475905_+	recombinase	NA	A0A0N7KZJ3	Stx2-converting_phage	100.0	2.4e-43
AYQ01342.1|1475901_1476582_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	98.7	5.1e-131
AYQ01343.1|1476578_1476737_+	DUF1317 family protein	NA	M1FJ61	Enterobacteria_phage	88.5	6.4e-21
AYQ01344.1|1476733_1477798_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	64.8	1.7e-133
AYQ01345.1|1477951_1478170_+	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	94.4	3.2e-34
AYQ01346.1|1478217_1478457_+	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	94.9	3.9e-38
AYQ01347.1|1478596_1478833_+	excisionase	NA	NA	NA	NA	NA
AYQ01348.1|1478822_1479965_+|integrase	integrase	integrase	O21929	Phage_21	99.7	8.1e-206
AYQ01349.1|1480078_1481329_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
1480032:1480055	attR	CAACGGGCGTATAACACGCCCGTT	NA	NA	NA	NA
>prophage 3
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	1610136	1654789	4750764	transposase	Stx2-converting_phage(33.33%)	38	NA	NA
AYQ01473.1|1610136_1610595_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	5.5e-12
AYQ01474.1|1611323_1612469_-	class C beta-lactamase CMY-2	NA	NA	NA	NA	NA
AYQ01475.1|1612792_1614055_-|transposase	IS1380 family transposase ISEc9	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
AYQ01476.1|1614320_1615649_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AYQ01477.1|1615880_1616060_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ01478.1|1616022_1616199_-	DUF3927 domain-containing protein	NA	NA	NA	NA	NA
AYQ01479.1|1616442_1617225_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.2	1.7e-138
AYQ01480.1|1618257_1618401_-	chemotaxis protein	NA	NA	NA	NA	NA
AYQ01481.1|1618954_1620493_-|transposase	IS66-like element ISEc8 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	99.2	2.1e-297
AYQ01482.1|1620542_1620890_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	99.1	1.1e-60
AYQ04273.1|1620886_1621267_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	99.2	1.2e-65
AYQ01483.1|1621721_1622735_-	DUF4432 domain-containing protein	NA	NA	NA	NA	NA
AYQ01484.1|1622746_1624063_-	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
AYQ01485.1|1624090_1625011_-	ribokinase	NA	NA	NA	NA	NA
AYQ01486.1|1625316_1626099_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ01487.1|1626100_1626199_-	acetolactate synthase	NA	NA	NA	NA	NA
AYQ04274.1|1626326_1626527_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ01488.1|1626811_1628040_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.0	2.7e-170
AYQ01489.1|1628216_1628456_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ01490.1|1628642_1629278_+	galactonate dehydratase	NA	NA	NA	NA	NA
AYQ01491.1|1629359_1629797_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ01492.1|1629859_1630684_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
AYQ04275.1|1630932_1631271_+	aldolase	NA	NA	NA	NA	NA
AYQ01493.1|1631384_1632956_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AYQ01494.1|1632967_1634143_+	putative C-S lyase	NA	NA	NA	NA	NA
AYQ01495.1|1634156_1636046_+	enterotoxin	NA	NA	NA	NA	NA
AYQ04276.1|1636214_1636421_-	methyltransferase	NA	NA	NA	NA	NA
AYQ01496.1|1636525_1637962_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ04277.1|1637958_1642917_-	nuclease	NA	NA	NA	NA	NA
AYQ01497.1|1643591_1644155_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AYQ01498.1|1644975_1646409_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AYQ01499.1|1646627_1646825_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AYQ01500.1|1647069_1647366_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
AYQ01501.1|1648477_1650295_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ01502.1|1650481_1651684_-	DUF4102 domain-containing protein	NA	A0A1B0VMI6	Pseudomonas_phage	34.4	2.9e-44
AYQ01503.1|1652050_1653037_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ01504.1|1653033_1653525_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
AYQ01505.1|1653627_1654789_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
>prophage 4
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	1868468	1878562	4750764	transposase,integrase	Salmonella_phage(90.0%)	13	1868138:1868151	1878604:1878617
1868138:1868151	attL	AAAACAATAAGTTA	NA	NA	NA	NA
AYQ04285.1|1868468_1868657_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	95.2	2.0e-24
AYQ01682.1|1868815_1871209_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	93.7	0.0e+00
AYQ01683.1|1871205_1872063_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.8	9.5e-159
AYQ01684.1|1872059_1872287_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	7.8e-36
AYQ01685.1|1872286_1872520_-	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	97.4	1.9e-32
AYQ01686.1|1872587_1872929_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYQ01687.1|1873046_1873343_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	88.5	1.9e-21
AYQ01688.1|1873350_1873860_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.2	1.3e-86
AYQ01689.1|1873892_1874114_-	regulator	NA	NA	NA	NA	NA
AYQ01690.1|1874259_1875138_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	39.4	1.7e-30
AYQ01691.1|1875149_1876094_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ01692.1|1876214_1877435_+|transposase	ISL3-like element ISKox3 family transposase	transposase	NA	NA	NA	NA
AYQ01693.1|1877509_1878562_+|integrase	site-specific integrase	integrase	A0A218M4I3	Erwinia_phage	57.0	1.4e-106
1878604:1878617	attR	TAACTTATTGTTTT	NA	NA	NA	NA
>prophage 5
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	1958145	1985349	4750764	lysis,tail,integrase,capsid,terminase	Enterobacteria_phage(47.06%)	48	1960061:1960075	1985423:1985437
AYQ01762.1|1958145_1959435_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.1	3.4e-19
AYQ01763.1|1959493_1959970_+	kinase inhibitor	NA	NA	NA	NA	NA
1960061:1960075	attL	TTAGTATAAAAAAGC	NA	NA	NA	NA
AYQ01764.1|1960715_1962047_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.1	1.4e-20
AYQ01765.1|1962120_1962297_-|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	84.5	9.4e-21
AYQ01766.1|1962446_1963115_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AYQ01767.1|1963059_1963197_-|capsid	nucleocapsid protein	capsid	NA	NA	NA	NA
AYQ01768.1|1964005_1964566_-|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	98.8	4.9e-87
AYQ01769.1|1964954_1965188_+	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	94.4	7.3e-21
AYQ01770.1|1965244_1965655_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
AYQ01771.1|1966006_1966159_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	96.0	3.1e-20
AYQ01772.1|1966187_1966394_-	hypothetical protein	NA	H6WRZ6	Salmonella_phage	98.5	5.3e-31
AYQ01773.1|1966610_1967108_-	lysozyme	NA	A0A1B5FP97	Escherichia_phage	97.0	1.6e-89
AYQ01774.1|1967107_1967323_-|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	98.6	1.2e-33
AYQ01775.1|1967510_1968098_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYQ01776.1|1968106_1968241_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYQ01777.1|1968592_1969552_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA	NA
AYQ01778.1|1969744_1970269_+	hypothetical protein	NA	A0A1W6JNX6	Morganella_phage	54.1	1.1e-48
AYQ01779.1|1970424_1970802_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	84.2	7.3e-55
AYQ01780.1|1970887_1971028_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	67.4	5.5e-08
AYQ01781.1|1971024_1971387_-	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	97.4	1.5e-60
AYQ01782.1|1971383_1971674_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	91.7	4.8e-46
AYQ01783.1|1971666_1971837_-	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
AYQ01784.1|1971836_1972292_-	hypothetical protein	NA	I6PD71	Cronobacter_phage	66.2	5.9e-59
AYQ01785.1|1972288_1972390_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ01786.1|1972482_1972935_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ01787.1|1972931_1973492_-	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA	NA
AYQ01788.1|1973748_1973940_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ01789.1|1973976_1974270_-	protein ren	NA	A0A0N6WES4	Escherichia_phage	95.7	1.1e-42
AYQ01790.1|1974266_1974968_-	Replication protein P	NA	K7P6G2	Enterobacteria_phage	99.6	3.8e-129
AYQ04291.1|1974964_1975894_-	Replication protein O	NA	A0A0M5M7Y1	Salmonella_phage	63.4	1.2e-109
AYQ01791.1|1975980_1976520_-	regulator	NA	M9NZI6	Enterobacteria_phage	66.1	2.0e-61
AYQ01792.1|1976589_1976820_-	helix-turn-helix domain-containing protein	NA	A0A2H4FNF3	Salmonella_phage	68.0	1.5e-21
AYQ04292.1|1976924_1977614_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	75.0	2.8e-92
AYQ01793.1|1977736_1978486_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ01794.1|1978482_1979310_+	DUF3037 domain-containing protein	NA	NA	NA	NA	NA
AYQ01795.1|1979818_1980025_+	cell division inhibitor protein	NA	K7P6H3	Enterobacteria_phage	85.3	3.2e-28
AYQ01796.1|1980100_1980397_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	100.0	1.6e-49
AYQ01797.1|1980402_1981188_+	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
AYQ01798.1|1981184_1981865_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	98.7	3.0e-131
AYQ01799.1|1981861_1982044_+	DUF1317 family protein	NA	A0A0N7CHV0	Escherichia_phage	98.3	2.2e-28
AYQ01800.1|1982016_1982208_+	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	98.4	2.8e-26
AYQ01801.1|1982218_1982500_+	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	100.0	2.5e-47
AYQ01802.1|1982598_1982820_+	TraR/DksA family transcriptional regulator	NA	A0A0N7C211	Escherichia_phage	97.3	1.4e-34
AYQ01803.1|1983030_1983633_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ01804.1|1983757_1983943_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ01805.1|1983875_1984043_+	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
AYQ01806.1|1984082_1984301_+	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
AYQ01807.1|1984278_1985349_+|integrase	integrase	integrase	Q9MCR4	Enterobacteria_phage	99.7	1.9e-201
1985423:1985437	attR	TTAGTATAAAAAAGC	NA	NA	NA	NA
>prophage 6
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	2472839	2488527	4750764	tail,integrase	Shigella_phage(33.33%)	17	2469943:2470002	2484612:2484671
2469943:2470002	attL	CTTATTGATTTAAATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
AYQ02226.1|2472839_2473613_+	hypothetical protein	NA	G9IA57	Pseudomonas_phage	37.7	4.1e-36
AYQ04305.1|2473682_2473811_-|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	84.6	1.7e-11
AYQ02227.1|2473865_2477009_-	GntR family transcriptional regulator	NA	K7PGT9	Enterobacteria_phage	57.4	9.3e-260
AYQ02228.1|2476998_2477178_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
AYQ04306.1|2477353_2477911_-	protein YmfL	NA	S5FXP0	Shigella_phage	96.2	1.5e-96
AYQ02229.1|2477948_2478149_-	cell division protein	NA	NA	NA	NA	NA
AYQ02230.1|2478246_2478873_+	LexA family transcriptional regulator	NA	K7PM82	Enterobacteria_phage	48.8	2.5e-47
AYQ04307.1|2479103_2479601_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ02231.1|2480094_2480457_+	hypothetical protein	NA	Q8SBF8	Shigella_phage	100.0	8.6e-61
AYQ02232.1|2480522_2481347_+	DUF2303 family protein	NA	U5P439	Shigella_phage	99.6	6.0e-150
AYQ02233.1|2481474_2482011_+	HD family hydrolase	NA	S5MW55	Escherichia_phage	98.3	2.0e-98
AYQ02234.1|2482001_2482880_+	hypothetical protein	NA	A0A2R2Z314	Escherichia_phage	92.4	5.3e-165
AYQ02235.1|2482876_2483221_+	DNA-binding protein	NA	U5P0J0	Shigella_phage	80.7	2.0e-30
AYQ02236.1|2483447_2484611_+|integrase	integrase	integrase	U5P434	Shigella_phage	100.0	2.4e-229
AYQ02237.1|2484815_2486069_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.0	1.7e-95
2484612:2484671	attR	CTTATTGATTTAAATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
AYQ02238.1|2486080_2487184_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
AYQ02239.1|2487471_2488527_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.9	7.7e-118
>prophage 7
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	2874406	2880965	4750764	transposase	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
AYQ02563.1|2874406_2875363_+	iron-dicitrate ABC transporter permease FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
AYQ02564.1|2875363_2876131_+	iron-dicitrate ABC transporter ATP-binding subunit	NA	G3M9Y6	Bacillus_virus	24.3	5.4e-12
AYQ02565.1|2876688_2876946_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ02566.1|2877997_2879149_+|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
AYQ02567.1|2879068_2879419_-|transposase	transposase	transposase	Q716C1	Shigella_phage	97.7	8.9e-39
AYQ02568.1|2879519_2880092_+	hypothetical protein	NA	Q858R9	Enterobacteria_phage	69.0	2.2e-71
AYQ02569.1|2880140_2880965_-	hypothetical protein	NA	L7TR00	Rhizobium_phage	35.5	3.0e-16
>prophage 8
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	3297668	3316187	4750764	tail,lysis,integrase	Escherichia_virus(30.0%)	22	3297511:3297557	3313399:3313445
3297511:3297557	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
AYQ04335.1|3297668_3297923_-	DNA-binding transcriptional regulator	NA	M1SNR2	Escherichia_phage	100.0	1.3e-44
AYQ02920.1|3299134_3300034_-	hypothetical protein	NA	Q7Y4D2	Escherichia_virus	99.7	4.0e-168
AYQ02921.1|3300249_3300777_-|tail	tail fiber assembly protein	tail	A0A0C4UR05	Shigella_phage	88.6	5.1e-86
AYQ02922.1|3300778_3301780_-|tail	phage tail protein	tail	A0A0C4UQV0	Shigella_phage	91.7	1.2e-176
AYQ02923.1|3302303_3303089_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ02924.1|3303160_3303613_-	phage virion morphogenesis protein	NA	A0A0F7LBV9	Escherichia_phage	98.7	5.3e-76
AYQ02925.1|3303605_3304073_-|tail	phage tail protein	tail	Q7Y4E0	Escherichia_virus	98.7	1.9e-81
AYQ02926.1|3304035_3304209_-|lysis	phage lysis protein	lysis	Q7Y4E1	Escherichia_virus	96.5	2.3e-24
AYQ02927.1|3304180_3304606_-|lysis	LysB family phage lysis regulatory protein	lysis	Q858W0	Yersinia_virus	98.6	5.5e-67
AYQ02928.1|3304593_3305019_-	protein lysA	NA	A0A0F7LBP4	Escherichia_phage	92.9	3.4e-56
AYQ02929.1|3306308_3307382_+	hypothetical protein	NA	Q7Y4B3	Escherichia_virus	100.0	1.2e-203
AYQ02930.1|3307374_3308412_+	hypothetical protein	NA	Q7Y4B4	Escherichia_virus	100.0	4.6e-200
AYQ02931.1|3308408_3309347_-	DNA cytosine methyltransferase	NA	Q7Y4B5	Escherichia_virus	100.0	3.1e-187
AYQ02932.1|3309589_3309796_-	hypothetical protein	NA	Q2P9X3	Enterobacteria_phage	97.0	2.4e-31
AYQ02933.1|3309795_3310248_-	DUF3850 domain-containing protein	NA	Q2P9X4	Enterobacteria_phage	96.7	1.4e-79
AYQ02934.1|3310844_3311345_-	replication protein B	NA	M1SV55	Escherichia_phage	100.0	2.6e-92
AYQ02935.1|3311514_3311787_-	hypothetical protein	NA	Q1JS44	Enterobacteria_phage	100.0	1.5e-46
AYQ02936.1|3311939_3312233_+	helix-turn-helix domain-containing protein	NA	Q1JS45	Enterobacteria_phage	100.0	1.0e-48
AYQ02937.1|3312302_3313283_+|integrase	integrase	integrase	U5N0A8	Enterobacteria_phage	99.7	2.3e-185
AYQ04336.1|3313468_3313969_-	periplasmic protein CpxP	NA	NA	NA	NA	NA
3313399:3313445	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
AYQ02938.1|3314118_3314817_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
AYQ02939.1|3314813_3316187_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.9	3.8e-16
>prophage 9
CP033401	Escherichia coli strain WCHEC020031 chromosome, complete genome	4750764	4622955	4636138	4750764		Escherichia_phage(50.0%)	12	NA	NA
AYQ04096.1|4622955_4623717_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	2.0e-59
AYQ04097.1|4623710_4624337_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
AYQ04098.1|4624476_4625616_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
AYQ04099.1|4625678_4626671_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AYQ04100.1|4626764_4628129_-	GntP family transporter	NA	NA	NA	NA	NA
AYQ04101.1|4628217_4628994_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AYQ04102.1|4628998_4629637_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
AYQ04103.1|4629633_4630896_-	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	1.3e-135
AYQ04104.1|4630892_4631801_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
AYQ04105.1|4631996_4632764_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
AYQ04106.1|4632814_4633471_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	8.0e-49
AYQ04107.1|4633576_4636138_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.7e-30
>prophage 1
CP033400	Escherichia coli strain WCHEC020031 plasmid pOXA1_020031, complete sequence	91652	13932	53228	91652	protease,integrase,transposase	Escherichia_phage(53.33%)	38	9584:9643	27116:27675
9584:9643	attL	GCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGG	NA	NA	NA	NA
AYP99986.1|13932_14946_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AYP99987.1|15192_15402_+	hypothetical protein	NA	NA	NA	NA	NA
AYP99988.1|15347_16052_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYP99989.1|16191_16956_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
AYP99990.1|17146_17503_-	hypothetical protein	NA	NA	NA	NA	NA
AYP99991.1|17448_18033_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYP99992.1|18032_19271_-	MFS transporter	NA	NA	NA	NA	NA
AYP99993.1|19267_20173_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
AYP99994.1|20294_20999_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYP99995.1|21035_22163_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
AYP99996.1|22213_22459_-	hypothetical protein	NA	NA	NA	NA	NA
AYP99997.1|22464_22656_+	hypothetical protein	NA	NA	NA	NA	NA
AYP99998.1|23137_23680_-	tunicamycin resistance protein	NA	NA	NA	NA	NA
AYP99999.1|23692_24553_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
AYQ00001.1|25767_26634_+|transposase	IS4 family transposase	transposase	A4KWT9	Enterobacteria_phage	100.0	1.3e-163
AYQ00002.1|26667_27372_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AYQ00003.1|27809_28670_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
27116:27675	attR	CCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGTTTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTTCAGCCAGCATCTCCTGCAGCTCACGGTAACTGATGCCGTATTTGCAGTACCAGCGTACGGCCCACAGAATGATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCCTAGAACGCACGAATGAGGGCCGACAGGAAGCAAAGCTGAAAGGAATCAAATTTGGCCGCAGGCGTACCGTGGACAGGAACGTCGTGCTGACGCTTCATCAGAAGGGCACTGGTGCAACGGAAATTGCTCATCAGCTCAGTATTGCCCGCTCCACGGTTTATAAAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGA	NA	NA	NA	NA
AYQ00004.1|28819_29245_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AYQ00005.1|29256_29961_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ00006.1|30021_30858_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
AYQ00007.1|30857_31661_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
AYQ00008.1|31721_32537_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	3.5e-09
AYQ00009.1|32844_33696_-	replication protein	NA	NA	NA	NA	NA
AYQ00010.1|34451_35156_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ00011.1|36115_36757_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AYQ00012.1|37329_37890_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
AYQ00013.1|40510_41371_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
AYQ00014.1|41879_42584_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ00059.1|43215_44046_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
AYQ00060.1|44176_44731_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
AYQ00015.1|44874_45579_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYQ00016.1|48123_48456_-	mRNA interferase PemK	NA	NA	NA	NA	NA
AYQ00017.1|48457_48715_-	antitoxin PemI	NA	NA	NA	NA	NA
AYQ00018.1|48807_49461_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYQ00019.1|50400_51258_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
AYQ00061.1|51250_51325_-	RepA leader peptide Tap	NA	NA	NA	NA	NA
AYQ00020.1|51408_51546_+	replication protein RepA	NA	NA	NA	NA	NA
AYQ00021.1|51686_53228_+|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
>prophage 2
CP033400	Escherichia coli strain WCHEC020031 plasmid pOXA1_020031, complete sequence	91652	83090	90520	91652		Escherichia_phage(57.14%)	7	NA	NA
AYQ00051.1|83090_86207_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	24.0	2.9e-27
AYQ00052.1|86328_87612_-	restriction endonuclease subunit S	NA	F2Y1N5	Organic_Lake_phycodnavirus	26.5	2.2e-10
AYQ00065.1|87608_89165_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.5	7.1e-104
AYQ00053.1|89347_89569_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
AYQ00054.1|89568_89949_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A077SK56	Escherichia_phage	100.0	1.1e-63
AYQ00055.1|89953_90133_+	PdcA protein	NA	Q71TH5	Escherichia_phage	96.6	3.5e-23
AYQ00056.1|90160_90520_+	pdcB	NA	A0A077SLM1	Escherichia_phage	98.9	5.0e-45
