assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003710225.1_ASM371022v1	CP033372	Lactobacillus fermentum strain DR9 plasmid unnamed1, complete sequence	1	52314-52411	1	CRISPRCasFinder	no		WYL,cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,DinG,cas2	Orphan	GGAAGTGTGTACCAACCTATCAAAC	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas1,cas9,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,cas2,csm5gr7,csm4gr5,csm3gr7,cas10,cas6	NA|183aa|up_5|CP033372.1_41230_41779_+,NA|202aa|up_2|CP033372.1_46607_47213_-,NA	NA|182aa|up_9|CP033372.1_34993_35539_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|139aa|up_8|CP033372.1_35590_36007_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|104aa|up_7|CP033372.1_39026_39338_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|197aa|up_6|CP033372.1_39334_39925_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|183aa|up_5|CP033372.1_41230_41779_+	NA	NA|419aa|up_4|CP033372.1_41919_43176_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|308aa|up_3|CP033372.1_43520_44444_-	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|202aa|up_2|CP033372.1_46607_47213_-	NA	NA|303aa|up_1|CP033372.1_48190_49099_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|459aa|up_0|CP033372.1_49378_50755_-	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252)	NA|337aa|down_0|CP033372.1_52761_53772_+	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)	NA|196aa|down_1|CP033372.1_56099_56687_+	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA|303aa|down_2|CP033372.1_56827_57736_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|451aa|down_3|CP033372.1_61585_62938_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|204aa|down_4|CP033372.1_62957_63569_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|463aa|down_5|CP033372.1_63951_65340_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|465aa|down_6|CP033372.1_65349_66744_+	PRK06481, PRK06481, flavocytochrome c	NA|313aa|down_7|CP033372.1_66822_67761_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|474aa|down_8|CP033372.1_67802_69224_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|348aa|down_9|CP033372.1_71619_72663_+	cd02169, Citrate_lyase_ligase, Citrate lyase ligase
GCA_003710225.1_ASM371022v1	CP033372	Lactobacillus fermentum strain DR9 plasmid unnamed1, complete sequence	2	500714-501841	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh	WYL,cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,DinG,cas2	Type I-E	GTGCTCCCCATGTATATGGGGGTGATCC,GTGCTCCCCATGTATATGGGGGTGATCC,GTGCTCCCCATGTATATGGGGGTGATCC,GTGCTCCCCATGTATATGGGGGTGATCC	28,28,28,28	0	0	NA	NA	NA:NA:NA:NA	15,18,18,15	18	TypeI-E	cas14j,cas1,cas9,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,cas2,csm5gr7,csm4gr5,csm3gr7,cas10,cas6	NA,NA|65aa|down_1|CP033372.1_506454_506649_+,NA|41aa|down_3|CP033372.1_509402_509525_-,NA|64aa|down_5|CP033372.1_510559_510751_-	NA|87aa|up_9|CP033372.1_486326_486587_+	pfam13083, KH_4, KH domain	NA|120aa|up_8|CP033372.1_489481_489841_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	cas3|1117aa|up_7|CP033372.1_490070_493421_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|386aa|up_6|CP033372.1_493300_494458_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|195aa|up_5|CP033372.1_494474_495059_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|366aa|up_4|CP033372.1_495070_496168_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|CP033372.1_496148_496856_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|219aa|up_2|CP033372.1_496868_497525_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|407aa|up_1|CP033372.1_498097_499318_+	pfam00872, Transposase_mut, Transposase, Mutator family	DEDDh|293aa|up_0|CP033372.1_499805_500684_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|241aa|down_0|CP033372.1_503421_504144_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|65aa|down_1|CP033372.1_506454_506649_+	NA	NA|455aa|down_2|CP033372.1_508058_509423_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|41aa|down_3|CP033372.1_509402_509525_-	NA	NA|310aa|down_4|CP033372.1_509551_510481_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|64aa|down_5|CP033372.1_510559_510751_-	NA	NA|510aa|down_6|CP033372.1_510877_512407_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|458aa|down_7|CP033372.1_512446_513820_+	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|231aa|down_8|CP033372.1_513951_514644_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|317aa|down_9|CP033372.1_514568_515519_+	pfam00665, rve, Integrase core domain
GCA_003710225.1_ASM371022v1	CP033372	Lactobacillus fermentum strain DR9 plasmid unnamed1, complete sequence	3	721076-721170	3	CRISPRCasFinder	no	cas14j	WYL,cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,DinG,cas2	Unclear	GCGGTGTCCGTGTGCTTGGGGCGTGAAACTA	31	0	0	NA	NA	NA	1	1	TypeV	cas14j,cas1,cas9,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,cas2,csm5gr7,csm4gr5,csm3gr7,cas10,cas6	NA|69aa|up_2|CP033372.1_718986_719193_+,NA|93aa|up_1|CP033372.1_719201_719480_+,NA|69aa|down_0|CP033372.1_722077_722284_-,NA|95aa|down_1|CP033372.1_722283_722568_-,NA|76aa|down_2|CP033372.1_722567_722795_-,NA|115aa|down_3|CP033372.1_722809_723154_-,NA|117aa|down_4|CP033372.1_723158_723509_-,NA|72aa|down_6|CP033372.1_726284_726500_-	NA|178aa|up_9|CP033372.1_711040_711574_+	pfam04892, VanZ, VanZ like family	NA|396aa|up_8|CP033372.1_711776_712964_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|114aa|up_7|CP033372.1_713224_713566_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|335aa|up_6|CP033372.1_713578_714583_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|449aa|up_5|CP033372.1_714709_716056_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|507aa|up_4|CP033372.1_716077_717598_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|314aa|up_3|CP033372.1_717798_718740_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|69aa|up_2|CP033372.1_718986_719193_+	NA	NA|93aa|up_1|CP033372.1_719201_719480_+	NA	NA|163aa|up_0|CP033372.1_719515_720004_+	cd02076, P-type_ATPase_H, plant and fungal plasma membrane H(+)-ATPases, and related bacterial and archaeal putative H(+)-ATPases	NA|69aa|down_0|CP033372.1_722077_722284_-	NA	NA|95aa|down_1|CP033372.1_722283_722568_-	NA	NA|76aa|down_2|CP033372.1_722567_722795_-	NA	NA|115aa|down_3|CP033372.1_722809_723154_-	NA	NA|117aa|down_4|CP033372.1_723158_723509_-	NA	NA|527aa|down_5|CP033372.1_723813_725394_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|72aa|down_6|CP033372.1_726284_726500_-	NA	NA|89aa|down_7|CP033372.1_726944_727211_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|62aa|down_8|CP033372.1_727222_727408_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|368aa|down_9|CP033372.1_728757_729861_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
GCA_003710225.1_ASM371022v1	CP033371	Lactobacillus fermentum strain DR9 chromosome, complete genome	1	58788-60143	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas14j,cas1,cas9	cas14j,cas1,cas9,DEDDh,cas3,csa3	Type II-B, Type II-B,Type II-C, or Type II-C?,Type II-A	GTACTCGGAACTACTGATCTGACACTCATCCAAGAC,GTACTCGGAACTACTGATCTGACACTCATCCAAGAC,GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	20,20,19	20	TypeII-B,TypeII-B,TypeII-C,TypeV,orTypeII-C?,TypeII-A	cas14j,cas1,cas9,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,cas2,csm5gr7,csm4gr5,csm3gr7,cas10,cas6	NA|109aa|up_9|CP033371.1_49839_50166_-,NA|61aa|up_8|CP033371.1_50464_50647_+,NA|189aa|up_3|CP033371.1_56430_56997_-,NA	NA|109aa|up_9|CP033371.1_49839_50166_-	NA	NA|61aa|up_8|CP033371.1_50464_50647_+	NA	NA|318aa|up_7|CP033371.1_50728_51682_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|343aa|up_6|CP033371.1_52065_53094_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|453aa|up_5|CP033371.1_53351_54710_+	pfam13546, DDE_5, DDE superfamily endonuclease	cas14j|388aa|up_4|CP033371.1_55147_56311_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|189aa|up_3|CP033371.1_56430_56997_-	NA	NA|72aa|up_2|CP033371.1_57326_57542_+	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|131aa|up_1|CP033371.1_57682_58075_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|120aa|up_0|CP033371.1_58090_58450_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	cas1|302aa|down_0|CP033371.1_61125_62031_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1382aa|down_1|CP033371.1_62238_66384_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|266aa|down_2|CP033371.1_69840_70638_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|214aa|down_3|CP033371.1_70802_71444_+	PRK00043, thiE, thiamine phosphate synthase	NA|271aa|down_4|CP033371.1_71505_72318_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|148aa|down_5|CP033371.1_72332_72776_-	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|110aa|down_6|CP033371.1_72865_73195_-	pfam02517, Abi, CAAX protease self-immunity	NA|276aa|down_7|CP033371.1_73921_74749_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|180aa|down_8|CP033371.1_75302_75842_-	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|204aa|down_9|CP033371.1_76696_77308_+	pfam03596, Cad, Cadmium resistance transporter
GCA_003710225.1_ASM371022v1	CP033373	Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence	1	228719-230271	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas2,csm5gr7,csm4gr5,csm3gr7,cas10,cas6	csa3,WYL,cas14j,cas2,csm5gr7,csm4gr5,csm3gr7,cas10,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC,GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC,GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC	36,36,36	0	0	NA	NA	NA:NA:NA	21,20,20	21	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	cas14j,cas1,cas9,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,cas2,csm5gr7,csm4gr5,csm3gr7,cas10,cas6	NA|78aa|up_0|CP033373.1_228282_228516_-,NA|65aa|down_6|CP033373.1_236595_236790_-	NA|214aa|up_9|CP033373.1_211775_212417_-	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|407aa|up_8|CP033373.1_212898_214119_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|333aa|up_7|CP033373.1_214177_215176_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|426aa|up_6|CP033373.1_217615_218893_-	pfam13204, DUF4038, Protein of unknown function (DUF4038)	NA|317aa|up_5|CP033373.1_220342_221293_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|236aa|up_4|CP033373.1_221395_222103_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|400aa|up_3|CP033373.1_223418_224618_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|223aa|up_2|CP033373.1_224630_225299_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	cas2|102aa|up_1|CP033373.1_225959_226265_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	NA|78aa|up_0|CP033373.1_228282_228516_-	NA	csm5gr7|339aa|down_0|CP033373.1_230435_231452_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|306aa|down_1|CP033373.1_231448_232366_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|221aa|down_2|CP033373.1_232367_233030_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|47aa|down_3|CP033373.1_233042_233183_-	pfam03750, Csm2_III-A, Csm2 Type III-A	NA|407aa|down_4|CP033373.1_233179_234400_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|508aa|down_5|CP033373.1_234659_236183_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|65aa|down_6|CP033373.1_236595_236790_-	NA	NA|77aa|down_7|CP033373.1_236840_237071_-	pfam03750, Csm2_III-A, Csm2 Type III-A	NA|96aa|down_8|CP033373.1_237243_237531_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|down_9|CP033373.1_237554_238433_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed
