The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	6327308	1579774	1706628	6327308	protease,plate	Enterobacteria_phage(20.0%)	59	NA	NA
AYN82596.1|1579774_1581106_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AYN82597.1|1581165_1581642_-	type VI secretion protein	NA	NA	NA	NA	NA
AYN82598.1|1581850_1582396_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AYN82599.1|1583974_1584472_+	Hcp1 family type VI secretion system effector	NA	NA	NA	NA	NA
AYN82600.1|1584484_1584910_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AYN82601.1|1586652_1587669_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AYN82602.1|1587670_1590220_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.4	7.2e-77
AYN82603.1|1590293_1590827_+	hypothetical protein	NA	NA	NA	NA	NA
AYN82604.1|1593988_1594525_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA	NA
AYN82605.1|1594547_1594943_-	DUF4280 domain-containing protein	NA	NA	NA	NA	NA
AYN82606.1|1595219_1595861_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYN82607.1|1595992_1597267_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYN82608.1|1597683_1599999_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AYN82609.1|1599995_1600466_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AYN82610.1|1600730_1600967_-	hypothetical protein	NA	NA	NA	NA	NA
AYN82611.1|1601263_1601506_+	DUF1654 domain-containing protein	NA	NA	NA	NA	NA
AYN82612.1|1601572_1602724_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AYN82613.1|1602820_1603741_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYN82614.1|1603782_1604106_-	transcriptional repressor	NA	NA	NA	NA	NA
AYN82615.1|1606696_1608028_-	ornithine monooxygenase	NA	NA	NA	NA	NA
AYN82616.1|1608161_1608641_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYN82617.1|1608803_1609799_+	FecR family protein	NA	NA	NA	NA	NA
AYN82618.1|1609899_1611075_+	pyoverdine export/recycling transporter periplasmic adapter subunit PvdR	NA	NA	NA	NA	NA
AYN82619.1|1613072_1614497_+	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA	NA
AYN82620.1|1614545_1616180_-	pyoverdine biosynthesis protein PvdP	NA	NA	NA	NA	NA
AYN82621.1|1616396_1617743_+	membrane dipeptidase	NA	NA	NA	NA	NA
AYN82622.1|1622962_1625410_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AYN82623.1|1655274_1656486_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AYN82624.1|1656482_1657022_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AYN82625.1|1657345_1657906_+	hypothetical protein	NA	NA	NA	NA	NA
AYN82626.1|1657938_1658892_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYN82627.1|1658888_1659644_+	metal ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.0	7.7e-11
AYN82628.1|1659640_1660546_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AYN82629.1|1660542_1661460_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYN82630.1|1661559_1662324_-	thioesterase	NA	NA	NA	NA	NA
AYN82631.1|1662324_1662543_-	MbtH family protein	NA	NA	NA	NA	NA
AYN82632.1|1662620_1664030_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	23.8	9.9e-20
AYN82633.1|1664197_1665517_-	sorbosone dehydrogenase family protein	NA	NA	NA	NA	NA
AYN82634.1|1665509_1665935_-	hypothetical protein	NA	NA	NA	NA	NA
AYN82635.1|1666292_1667930_+	alpha,alpha-trehalase TreA	NA	NA	NA	NA	NA
AYN82636.1|1667933_1668872_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYN82637.1|1668972_1669833_+	pirin family protein	NA	NA	NA	NA	NA
AYN82638.1|1670665_1671292_+	hydrolase	NA	NA	NA	NA	NA
AYN85865.1|1671402_1672788_+	OprD family porin	NA	NA	NA	NA	NA
AYN82639.1|1672819_1673740_+	phenol degradation protein	NA	NA	NA	NA	NA
AYN82640.1|1674822_1675617_+	hypothetical protein	NA	G8I4Q8	Mycobacterium_phage	32.6	7.1e-07
AYN82641.1|1676173_1676971_+	hypothetical protein	NA	NA	NA	NA	NA
AYN85866.1|1692189_1692657_-	hypothetical protein	NA	NA	NA	NA	NA
AYN82642.1|1692743_1693658_-	polyphosphate kinase 2	NA	NA	NA	NA	NA
AYN82643.1|1693919_1694165_+	hypothetical protein	NA	NA	NA	NA	NA
AYN82644.1|1694201_1695206_-	HlyD family secretion protein	NA	NA	NA	NA	NA
AYN82645.1|1697639_1697825_+	hypothetical protein	NA	NA	NA	NA	NA
AYN82646.1|1697976_1698891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYN82647.1|1699409_1699955_-	DUF4946 domain-containing protein	NA	NA	NA	NA	NA
AYN82648.1|1699951_1701937_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.1	1.6e-36
AYN82649.1|1701965_1702400_-	hypothetical protein	NA	NA	NA	NA	NA
AYN82650.1|1702553_1703594_-|protease	protease modulator HflK	protease	NA	NA	NA	NA
AYN82651.1|1703590_1704616_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AYN82652.1|1704627_1706628_-|protease	protease modulator HflK	protease	NA	NA	NA	NA
>prophage 2
CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	6327308	2763428	2800475	6327308	tail,terminase,holin	Pseudomonas_phage(70.73%)	52	NA	NA
AYN83377.1|2763428_2765528_-	hypothetical protein	NA	W6MYA2	Pseudomonas_phage	97.0	0.0e+00
AYN83378.1|2765527_2765992_-	hypothetical protein	NA	W6MVK9	Pseudomonas_phage	97.4	1.1e-73
AYN83379.1|2766437_2768777_-	hypothetical protein	NA	W6MWW6	Pseudomonas_phage	98.5	0.0e+00
AYN83380.1|2769632_2770091_-	hypothetical protein	NA	W6MVK6	Pseudomonas_phage	98.7	8.9e-71
AYN83381.1|2770101_2771106_-	hypothetical protein	NA	W6MW28	Pseudomonas_phage	99.7	4.5e-184
AYN83382.1|2771118_2771742_-	peptidase	NA	W6MWW5	Pseudomonas_phage	92.3	3.0e-77
AYN83383.1|2771738_2772050_-	hypothetical protein	NA	W6MVD5	Pseudomonas_phage	97.1	5.9e-50
AYN83384.1|2772050_2773739_-|tail	phage tail protein	tail	W6MYA0	Pseudomonas_phage	97.5	0.0e+00
AYN83385.1|2774007_2775471_-	DNA packaging protein	NA	Q2A0C1	Sodalis_phage	58.2	6.4e-155
AYN83386.1|2775421_2775883_-|terminase	terminase	terminase	W6MWW3	Pseudomonas_phage	91.9	1.2e-67
AYN85906.1|2776715_2777045_-	hypothetical protein	NA	B5WZZ2	Pseudomonas_phage	91.7	3.4e-48
AYN83387.1|2777237_2777672_-	lysozyme	NA	A0A0S2SYD0	Pseudomonas_phage	49.3	5.0e-31
AYN83388.1|2777668_2777992_-|holin	phage holin, lambda family	holin	A0A1W6JTC7	Pseudomonas_phage	59.8	1.0e-28
AYN83389.1|2778360_2778933_-	hypothetical protein	NA	H2BDI9	Pseudomonas_virus	36.9	2.9e-26
AYN83390.1|2778929_2780063_-	oxidoreductase	NA	A0A220IHC1	Escherichia_phage	41.6	7.6e-79
AYN83391.1|2780062_2780299_-	DUF3310 domain-containing protein	NA	Q774Z7	Bordetella_phage	81.5	3.8e-25
AYN83392.1|2780364_2780748_-	hypothetical protein	NA	A0A088F6N3	Vibrio_phage	35.8	8.9e-08
AYN83393.1|2780744_2780951_-	hypothetical protein	NA	NA	NA	NA	NA
AYN83394.1|2780947_2781175_-	hypothetical protein	NA	NA	NA	NA	NA
AYN83395.1|2781171_2781390_-	hypothetical protein	NA	NA	NA	NA	NA
AYN83396.1|2781386_2781695_-	hypothetical protein	NA	K7P7Q1	Enterobacteria_phage	64.4	2.0e-26
AYN83397.1|2781691_2781931_-	hypothetical protein	NA	NA	NA	NA	NA
AYN83398.1|2781927_2782137_-	hypothetical protein	NA	NA	NA	NA	NA
AYN83399.1|2782133_2782436_-	hypothetical protein	NA	Q9MC48	Pseudomonas_phage	44.1	4.0e-11
AYN83400.1|2782432_2782834_-	NinB family protein	NA	A0A059VG13	Pseudomonas_phage	53.6	9.9e-34
AYN83401.1|2782826_2783042_-	hypothetical protein	NA	W6MW49	Pseudomonas_phage	93.0	2.6e-33
AYN83402.1|2783471_2784287_-	AAA family ATPase	NA	A0A059VK34	Pseudomonas_phage	53.2	1.8e-74
AYN83403.1|2784276_2785077_-	phage replication protein	NA	A0A2H4J580	uncultured_Caudovirales_phage	49.4	4.8e-64
AYN83404.1|2785163_2785343_-	hypothetical protein	NA	B5WZX8	Pseudomonas_phage	100.0	1.3e-25
AYN83405.1|2785361_2785550_-	hypothetical protein	NA	B5WZX7	Pseudomonas_phage	100.0	2.1e-26
AYN83406.1|2785561_2785783_-	Cro/Cl family transcriptional regulator	NA	B5WZX6	Pseudomonas_phage	100.0	5.5e-34
AYN83407.1|2786895_2787084_+	hypothetical protein	NA	NA	NA	NA	NA
AYN83408.1|2787357_2787555_+	hypothetical protein	NA	A0A0S2SYA6	Pseudomonas_phage	83.1	1.3e-26
AYN83409.1|2788544_2788802_+	hypothetical protein	NA	NA	NA	NA	NA
AYN83410.1|2788798_2789164_+	hypothetical protein	NA	A0A125RNR9	Pseudomonas_phage	96.7	2.0e-65
AYN83411.1|2789283_2790003_+	DNA cytosine methyltransferase	NA	A0A2I7QZY6	Vibrio_phage	59.6	4.2e-75
AYN83412.1|2790300_2790528_+	hypothetical protein	NA	NA	NA	NA	NA
AYN83413.1|2790570_2791317_+	phage recombination protein Bet	NA	A0A0S2SY88	Pseudomonas_phage	98.0	6.2e-138
AYN83414.1|2791922_2792369_+	single-stranded DNA-binding protein	NA	A0A0S2SY36	Pseudomonas_phage	88.0	2.0e-67
AYN83415.1|2792431_2793073_+	hypothetical protein	NA	NA	NA	NA	NA
AYN83416.1|2793235_2793460_+	hypothetical protein	NA	A0A0U4J8X2	Pseudomonas_phage	98.6	1.0e-35
AYN83417.1|2794761_2795268_+	hypothetical protein	NA	D4FUM1	Pseudomonas_phage	57.7	1.1e-56
AYN83418.1|2795257_2795458_+	hypothetical protein	NA	A0A0S2SY76	Pseudomonas_phage	100.0	2.9e-34
AYN83419.1|2795450_2795783_+	hypothetical protein	NA	Q9MC80	Pseudomonas_phage	92.7	3.9e-52
AYN85907.1|2796194_2796461_+	hypothetical protein	NA	H2BDE3	Pseudomonas_virus	68.4	1.3e-26
AYN83420.1|2796460_2796715_+	hypothetical protein	NA	NA	NA	NA	NA
AYN83421.1|2796711_2797056_+	ead/Ea22-like family protein	NA	H2BDE1	Pseudomonas_virus	63.0	4.8e-29
AYN83422.1|2797052_2797403_+	hypothetical protein	NA	Q9MC65	Pseudomonas_phage	67.3	7.9e-11
AYN83423.1|2797414_2797609_-	hypothetical protein	NA	B5WZS7	Pseudomonas_phage	100.0	1.8e-09
AYN83424.1|2798138_2798363_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AYN83425.1|2798359_2799595_-	DUF4102 domain-containing protein	NA	A0A2H4JAT5	uncultured_Caudovirales_phage	54.3	6.7e-129
AYN83426.1|2799809_2800475_+	GNAT family N-acetyltransferase	NA	K7YH93	Megavirus	30.2	3.8e-06
>prophage 3
CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	6327308	3861752	3913863	6327308	integrase,tail,tRNA,holin	Pseudomonas_phage(47.06%)	40	3863164:3863180	3915450:3915466
AYN84186.1|3861752_3862523_-|tail	phage tail protein	tail	A0A2D1GNP8	Pseudomonas_phage	55.6	5.5e-81
AYN84187.1|3862525_3863221_-|tail	phage minor tail protein L	tail	A0A1B0VNE0	Pseudomonas_phage	50.2	1.5e-69
3863164:3863180	attL	CGAACAGGCGCACCAGC	NA	NA	NA	NA
AYN84188.1|3863228_3863570_-|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	40.0	1.4e-17
AYN84189.1|3865449_3865704_-	hypothetical protein	NA	A0A2H4PI34	Pseudomonas_phage	38.4	6.3e-10
AYN84190.1|3866091_3866586_-|tail	phage tail protein	tail	A0A286S1Q8	Klebsiella_phage	56.5	1.4e-45
AYN84191.1|3866900_3867158_-	hypothetical protein	NA	A0A125RNP3	Pseudomonas_phage	64.6	8.3e-18
AYN85943.1|3867154_3867517_-	hypothetical protein	NA	H2BDA0	Pseudomonas_phage	47.9	4.2e-15
AYN84192.1|3867513_3868143_-	glycoside hydrolase family 19 protein	NA	A0A125RNP1	Pseudomonas_phage	77.5	3.5e-86
AYN84193.1|3868158_3868602_-|holin	holin	holin	B5TK61	Pseudomonas_phage	50.0	7.1e-25
AYN84194.1|3868964_3869324_-	hypothetical protein	NA	NA	NA	NA	NA
AYN84195.1|3869371_3869572_-	repressor PtrB	NA	W6ATC1	Enterobacter_phage	58.3	3.7e-05
AYN84196.1|3870029_3870800_+	transcriptional regulator	NA	A0A1B0Z078	Pseudomonas_phage	59.1	1.4e-71
AYN84197.1|3870899_3871214_+	transcriptional regulator	NA	NA	NA	NA	NA
AYN84198.1|3871529_3873008_-	anthranilate synthase component I	NA	NA	NA	NA	NA
AYN84199.1|3873080_3873899_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AYN84200.1|3873898_3874573_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AYN84201.1|3874696_3875527_-	ABC transporter permease	NA	NA	NA	NA	NA
AYN84202.1|3875632_3876808_-	ABC transporter permease	NA	NA	NA	NA	NA
AYN84203.1|3878094_3879204_-	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.4	7.8e-28
AYN84204.1|3879437_3880472_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AYN84205.1|3880600_3881233_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AYN84206.1|3881278_3883672_-	PAS domain S-box protein	NA	NA	NA	NA	NA
AYN84207.1|3883823_3884885_+	DUF3530 family protein	NA	NA	NA	NA	NA
AYN84208.1|3885646_3886321_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AYN84209.1|3890309_3891524_+	molecular chaperone SurA	NA	NA	NA	NA	NA
AYN84210.1|3892624_3893431_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
AYN84211.1|3893467_3893848_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AYN84212.1|3893847_3894699_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	33.3	1.1e-08
AYN84213.1|3894742_3895075_+	thiosulfate sulfurtransferase	NA	NA	NA	NA	NA
AYN84214.1|3895353_3897276_+	PrkA family serine protein kinase	NA	NA	NA	NA	NA
AYN84215.1|3900293_3900800_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AYN84216.1|3900843_3902076_+|tRNA	multifunctional tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/2'phosphatase	tRNA	A0A076G5T8	Escherichia_phage	43.1	2.6e-77
AYN84217.1|3902048_3902591_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AYN84218.1|3902581_3902935_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AYN84219.1|3903018_3903588_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AYN84220.1|3903666_3904692_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.1	1.4e-108
AYN84221.1|3904891_3905107_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AYN84222.1|3905176_3905626_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.8	5.0e-18
AYN84223.1|3907781_3909635_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.8	3.1e-37
AYN84224.1|3913725_3913863_+|integrase	integrase	integrase	NA	NA	NA	NA
3915450:3915466	attR	GCTGGTGCGCCTGTTCG	NA	NA	NA	NA
