assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003691345.1_ASM369134v1	CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	1	306378-307263	1,1	CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas6e,cas1	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	Type I-E	GTGTTCCCCACGGGTGTGGGGATGAACCG,GTGTTCCCCACGGGTGTGGGGATGAACCG	29,29	0	0	NA	NA	I-E,II-B:I-E,II-B	14,14	14	TypeI-E	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	NA,NA|379aa|down_5|CP033084.1_319057_320194_+,NA|41aa|down_9|CP033084.1_324802_324925_+	NA|269aa|up_9|CP033084.1_291441_292248_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|66aa|up_8|CP033084.1_292381_292579_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|303aa|up_7|CP033084.1_292591_293500_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|680aa|up_6|CP033084.1_293499_295539_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|86aa|up_5|CP033084.1_295535_295793_+	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|168aa|up_4|CP033084.1_295814_296318_-	pfam14595, Thioredoxin_9, Thioredoxin	NA|261aa|up_3|CP033084.1_296508_297291_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|504aa|up_2|CP033084.1_297293_298805_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|384aa|up_1|CP033084.1_298794_299946_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|859aa|up_0|CP033084.1_303540_306117_-	PRK13557, PRK13557, histidine kinase; Provisional	cas8e|523aa|down_0|CP033084.1_310662_312231_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|177aa|down_1|CP033084.1_312227_312758_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|381aa|down_2|CP033084.1_312767_313910_+	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|204aa|down_3|CP033084.1_314547_315159_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|297aa|down_4|CP033084.1_315185_316076_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|379aa|down_5|CP033084.1_319057_320194_+	NA	NA|594aa|down_6|CP033084.1_320280_322062_+	TIGR01842, Proteases_secretion_ATP-binding_protein_PrtD, type I secretion system ABC transporter, PrtD family	NA|433aa|down_7|CP033084.1_322058_323357_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|482aa|down_8|CP033084.1_323360_324806_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|41aa|down_9|CP033084.1_324802_324925_+	NA
GCA_003691345.1_ASM369134v1	CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	2	316431-317436	2,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas8e,cse2gr11,cas7,cas6e,cas1	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	Type I-E	GTGTTCCCCACATGCGTGGGGATGAACCG,GGTGTTCCCCACATGCGTGGGGATGAACCG,CCCCACATGCGTGGGGATGAACCG	29,30,24	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	16,16,16	16	TypeI-E	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	NA,NA|379aa|down_0|CP033084.1_319057_320194_+,NA|41aa|down_4|CP033084.1_324802_324925_+,NA|80aa|down_5|CP033084.1_325031_325271_-	NA|168aa|up_9|CP033084.1_295814_296318_-	pfam14595, Thioredoxin_9, Thioredoxin	NA|261aa|up_8|CP033084.1_296508_297291_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|504aa|up_7|CP033084.1_297293_298805_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|384aa|up_6|CP033084.1_298794_299946_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|859aa|up_5|CP033084.1_303540_306117_-	PRK13557, PRK13557, histidine kinase; Provisional	cas8e|523aa|up_4|CP033084.1_310662_312231_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|177aa|up_3|CP033084.1_312227_312758_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|381aa|up_2|CP033084.1_312767_313910_+	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|204aa|up_1|CP033084.1_314547_315159_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|297aa|up_0|CP033084.1_315185_316076_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|379aa|down_0|CP033084.1_319057_320194_+	NA	NA|594aa|down_1|CP033084.1_320280_322062_+	TIGR01842, Proteases_secretion_ATP-binding_protein_PrtD, type I secretion system ABC transporter, PrtD family	NA|433aa|down_2|CP033084.1_322058_323357_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|482aa|down_3|CP033084.1_323360_324806_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|41aa|down_4|CP033084.1_324802_324925_+	NA	NA|80aa|down_5|CP033084.1_325031_325271_-	NA	NA|483aa|down_6|CP033084.1_325157_326606_+	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal	NA|132aa|down_7|CP033084.1_326852_327248_+	pfam02974, Inh, Protease inhibitor Inh	NA|542aa|down_8|CP033084.1_327260_328886_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|335aa|down_9|CP033084.1_329124_330129_+	COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy production and conversion]
GCA_003691345.1_ASM369134v1	CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	3	2592744-2592846	3	CRISPRCasFinder	no	DEDDh	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	Unclear	GGCGTTATCCGCCGATACCCCGCCGC	26	0	0	NA	NA	NA	1	1	Orphan	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	NA|106aa|up_6|CP033084.1_2586182_2586500_-,NA|454aa|down_5|CP033084.1_2599357_2600719_+	NA|255aa|up_9|CP033084.1_2583217_2583982_+	cd07003, cupin_YobQ-like_N, Bacillus subtilis YobQ and related proteins, N-terminal cupin domain	NA|112aa|up_8|CP033084.1_2584046_2584382_+	PRK10089, PRK10089, chaperone CsaA	NA|300aa|up_7|CP033084.1_2584391_2585291_+	pfam00892, EamA, EamA-like transporter family	NA|106aa|up_6|CP033084.1_2586182_2586500_-	NA	NA|310aa|up_5|CP033084.1_2586699_2587629_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|276aa|up_4|CP033084.1_2587635_2588463_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|188aa|up_3|CP033084.1_2588444_2589008_+	PRK10903, PRK10903, peptidylprolyl isomerase A	NA|611aa|up_2|CP033084.1_2589070_2590903_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|89aa|up_1|CP033084.1_2591184_2591451_+	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|375aa|up_0|CP033084.1_2591483_2592608_-	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition	NA|53aa|down_0|CP033084.1_2592882_2593041_-	pfam11752, DUF3309, Protein of unknown function (DUF3309)	DEDDh|209aa|down_1|CP033084.1_2593149_2593776_-	PRK09145, PRK09145, 3'-5' exonuclease	NA|104aa|down_2|CP033084.1_2597314_2597626_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|286aa|down_3|CP033084.1_2597842_2598700_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|74aa|down_4|CP033084.1_2598993_2599215_+	COG3205, COG3205, Predicted membrane protein [Function unknown]	NA|454aa|down_5|CP033084.1_2599357_2600719_+	NA	NA|268aa|down_6|CP033084.1_2600722_2601526_+	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|286aa|down_7|CP033084.1_2601665_2602523_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|390aa|down_8|CP033084.1_2602586_2603756_-	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|264aa|down_9|CP033084.1_2604921_2605713_+	PRK00339, minC, septum site-determining protein MinC
GCA_003691345.1_ASM369134v1	CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	4	3008191-3008458	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no		cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	Orphan	TTTCTTAGCTGCCTATACGGCAGTGAAC,TTTCTTAGCTGCCTATACGGCAGTGAAC,TTTTCTTAGCTGCCTATACGGCAGTGAAC	28,28,29	2	2	3008399-3008430|3008399-3008429	CP033084.1_3084589-3084558|CP033084.1_3084589-3084559	I-F:I-F:I-F	4,4,2	4	Orphan	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	NA|59aa|up_5|CP033084.1_3003323_3003500_+,NA|141aa|up_1|CP033084.1_3006677_3007100_+,NA|38aa|up_0|CP033084.1_3007491_3007605_-,NA|105aa|down_0|CP033084.1_3008726_3009041_-,NA|71aa|down_3|CP033084.1_3015049_3015262_+	NA|629aa|up_9|CP033084.1_2997748_2999635_-	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	NA|299aa|up_8|CP033084.1_2999736_3000633_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|498aa|up_7|CP033084.1_3000648_3002142_-	TIGR01722, Methylmalonate-semialdehyde_dehydrogenase, methylmalonic acid semialdehyde dehydrogenase	NA|308aa|up_6|CP033084.1_3002273_3003197_+	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|59aa|up_5|CP033084.1_3003323_3003500_+	NA	NA|393aa|up_4|CP033084.1_3003507_3004686_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|66aa|up_3|CP033084.1_3005667_3005865_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|177aa|up_2|CP033084.1_3006047_3006578_+	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|141aa|up_1|CP033084.1_3006677_3007100_+	NA	NA|38aa|up_0|CP033084.1_3007491_3007605_-	NA	NA|105aa|down_0|CP033084.1_3008726_3009041_-	NA	NA|273aa|down_1|CP033084.1_3009393_3010212_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|495aa|down_2|CP033084.1_3010375_3011860_-	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|71aa|down_3|CP033084.1_3015049_3015262_+	NA	NA|252aa|down_4|CP033084.1_3015258_3016014_+	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|110aa|down_5|CP033084.1_3017962_3018292_+	pfam06942, GlpM, GlpM protein	NA|329aa|down_6|CP033084.1_3018308_3019295_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|307aa|down_7|CP033084.1_3019593_3020514_+	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold	NA|396aa|down_8|CP033084.1_3025436_3026624_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|576aa|down_9|CP033084.1_3026662_3028390_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product
GCA_003691345.1_ASM369134v1	CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	5	4197648-4197761	5	CRISPRCasFinder	no		cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	Orphan	TCATACCTTGCCCTCCAGTTCTTTGGCC	28	0	0	NA	NA	NA	1	1	Orphan	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	NA|185aa|up_5|CP033084.1_4188741_4189296_+,NA|251aa|up_3|CP033084.1_4190064_4190817_+,NA|168aa|up_2|CP033084.1_4192571_4193075_+,NA|50aa|up_0|CP033084.1_4194070_4194220_+,NA	NA|410aa|up_9|CP033084.1_4184429_4185659_+	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|146aa|up_8|CP033084.1_4185716_4186154_-	pfam14347, DUF4399, Domain of unknown function (DUF4399)	NA|231aa|up_7|CP033084.1_4187286_4187979_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|165aa|up_6|CP033084.1_4187981_4188476_-	COG1683, COG1683, Uncharacterized conserved protein [Function unknown]	NA|185aa|up_5|CP033084.1_4188741_4189296_+	NA	NA|233aa|up_4|CP033084.1_4189317_4190016_-	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|251aa|up_3|CP033084.1_4190064_4190817_+	NA	NA|168aa|up_2|CP033084.1_4192571_4193075_+	NA	NA|351aa|up_1|CP033084.1_4193053_4194106_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|50aa|up_0|CP033084.1_4194070_4194220_+	NA	NA|366aa|down_0|CP033084.1_4199849_4200947_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|368aa|down_1|CP033084.1_4201364_4202468_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|457aa|down_2|CP033084.1_4202583_4203954_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|251aa|down_3|CP033084.1_4205417_4206170_-	pfam07722, Peptidase_C26, Peptidase C26	NA|459aa|down_4|CP033084.1_4206449_4207826_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|354aa|down_5|CP033084.1_4208080_4209142_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|222aa|down_6|CP033084.1_4209202_4209868_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|369aa|down_7|CP033084.1_4210995_4212102_+	PRK13551, PRK13551, agmatine deiminase; Provisional	NA|461aa|down_8|CP033084.1_4212235_4213618_-	pfam03573, OprD, outer membrane porin, OprD family	NA|308aa|down_9|CP033084.1_4215357_4216281_-	COG0583, LysR, Transcriptional regulator [Transcription]
GCA_003691345.1_ASM369134v1	CP033084	Pseudomonas aeruginosa strain PA-3 chromosome, complete genome	6	4493083-4493226	3	PILER-CR	no		cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	Orphan	GACACCAGGCCGCCGCCGCGGTTGTCCAG	29	0	0	NA	NA	NA	2	2	Orphan	cas8e,cse2gr11,cas7,cas6e,cas1,WYL,DEDDh,DinG,csa3,cas3	NA|47aa|up_8|CP033084.1_4471929_4472070_-,NA|132aa|up_3|CP033084.1_4480468_4480864_-,NA|107aa|up_2|CP033084.1_4481450_4481771_-,NA|82aa|up_1|CP033084.1_4481767_4482013_-,NA|106aa|up_0|CP033084.1_4484143_4484461_-,NA	NA|611aa|up_9|CP033084.1_4469275_4471108_-	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|47aa|up_8|CP033084.1_4471929_4472070_-	NA	NA|222aa|up_7|CP033084.1_4475022_4475688_-	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799)	NA|118aa|up_6|CP033084.1_4475684_4476038_-	COG4259, COG4259, Uncharacterized protein conserved in bacteria [Function unknown]	NA|229aa|up_5|CP033084.1_4476068_4476755_-	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]	NA|470aa|up_4|CP033084.1_4478787_4480197_+	COG3174, COG3174, Predicted membrane protein [Function unknown]	NA|132aa|up_3|CP033084.1_4480468_4480864_-	NA	NA|107aa|up_2|CP033084.1_4481450_4481771_-	NA	NA|82aa|up_1|CP033084.1_4481767_4482013_-	NA	NA|106aa|up_0|CP033084.1_4484143_4484461_-	NA	NA|563aa|down_0|CP033084.1_4495134_4496823_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|76aa|down_1|CP033084.1_4497118_4497346_-	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|72aa|down_2|CP033084.1_4497529_4497745_-	COG3360, COG3360, Uncharacterized conserved protein [Function unknown]	NA|403aa|down_3|CP033084.1_4498838_4500047_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|269aa|down_4|CP033084.1_4500043_4500850_+	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|122aa|down_5|CP033084.1_4501666_4502032_+	COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]	NA|126aa|down_6|CP033084.1_4502010_4502388_-	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family	NA|305aa|down_7|CP033084.1_4502398_4503313_-	TIGR03418, chol_sulf_TF, putative choline sulfate-utilization transcription factor	NA|504aa|down_8|CP033084.1_4503425_4504937_+	TIGR03417, chol_sulfatase, choline-sulfatase	NA|518aa|down_9|CP033084.1_4505880_4507434_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
