The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033031	Agrobacterium tumefaciens strain 12D1 chromosome circular, complete sequence	3027766	632710	642495	3027766	capsid,terminase,tail,protease,portal,head	Arthrobacter_phage(20.0%)	13	NA	NA
AYM80499.1|632710_633970_+|terminase	large terminase phage packaging protein	terminase	A0A0U4IJ26	Arthrobacter_phage	42.5	5.8e-72
AYM80500.1|634100_634208_-	hypothetical protein	NA	NA	NA	NA	NA
AYM80501.1|634415_635054_+	chitinase	NA	R9U4A9	Rhizobium_phage	43.4	5.3e-37
AYM80502.1|635098_635422_+	stress responsive protein	NA	NA	NA	NA	NA
AYM80503.1|635677_636844_+|head,portal	phage head portal protein	head,portal	W8ECU7	Geobacillus_phage	37.7	5.1e-62
AYM80504.1|637039_637360_+	hypothetical protein	NA	NA	NA	NA	NA
AYM80505.1|637388_637997_+|head,protease	phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	40.5	1.8e-26
AYM80506.1|638027_639296_+|capsid	phage phi-C31 major capsid gp36-like protein	capsid	Q3HQT0	Burkholderia_phage	42.2	1.5e-75
AYM80507.1|639489_640059_+	hypothetical protein	NA	NA	NA	NA	NA
AYM80508.1|640062_640398_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AYM80509.1|640394_640790_+	hypothetical protein	NA	NA	NA	NA	NA
AYM80510.1|640797_641997_-	MFS permease	NA	NA	NA	NA	NA
AYM80511.1|642087_642495_+|tail	tail protein	tail	NA	NA	NA	NA
>prophage 2
CP033031	Agrobacterium tumefaciens strain 12D1 chromosome circular, complete sequence	3027766	1348492	1357188	3027766	tRNA	uncultured_Mediterranean_phage(66.67%)	8	NA	NA
AYM81189.1|1348492_1350025_+	long-chain acyl-CoA synthetase	NA	A0A2K9L3I8	Tupanvirus	23.1	1.5e-21
AYM81190.1|1350008_1351754_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
AYM81191.1|1351778_1352936_-	para-aminobenzoate synthase component I	NA	S4VT78	Pandoravirus	43.9	2.0e-42
AYM81192.1|1352973_1354104_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	53.3	6.1e-105
AYM81193.1|1354103_1355186_-|tRNA	S-adenosylmethionine tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AYM81194.1|1355506_1356016_-	peptidyl-prolyl cis-trans isomerase B (cyclophilin B)	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	1.4e-45
AYM81195.1|1356052_1356622_-	peptidyl-prolyl cis-trans isomerase A (cyclophilin A)	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.5	2.5e-46
AYM81196.1|1356651_1357188_-	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	39.0	9.2e-27
>prophage 3
CP033031	Agrobacterium tumefaciens strain 12D1 chromosome circular, complete sequence	3027766	1373565	1381988	3027766	tRNA	uncultured_Mediterranean_phage(75.0%)	9	NA	NA
AYM81213.1|1373565_1375035_-	lipoprotein	NA	I3PV24	Clostridium_phage	30.4	1.0e-11
AYM81214.1|1375474_1376128_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1J0MC37	Streptomyces_phage	35.1	1.0e-11
AYM81215.1|1376124_1376895_-	stationary-phase survival protein	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.8	1.1e-23
AYM81216.1|1377100_1378384_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.0	6.3e-98
AYM81217.1|1378486_1379290_-	sec-independent protein translocase protein TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.2	6.8e-42
AYM81218.1|1379286_1380024_-	sec-independent protein translocase protein TatB	NA	NA	NA	NA	NA
AYM81219.1|1380080_1380287_-	sec-independent protein translocase protein TatA	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.1e-08
AYM81220.1|1380415_1381150_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.4	6.5e-39
AYM81221.1|1381139_1381988_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.4	1.2e-33
>prophage 1
CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	160006	22435	83866	160006	holin,transposase,integrase	Paenibacillus_phage(14.29%)	51	69145:69160	89143:89158
AYM84806.1|22435_24061_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	29.2	1.5e-51
AYM84807.1|24195_25092_-	haloalkane dehalogenase	NA	B9U1C3	Vaccinia_virus	30.7	1.3e-28
AYM84808.1|25106_25730_-	peroxidase	NA	NA	NA	NA	NA
AYM84809.1|25869_27075_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYM84810.1|27128_27698_-	peroxidase	NA	NA	NA	NA	NA
AYM84811.1|27854_28889_-	ribose transport system permease protein	NA	NA	NA	NA	NA
AYM84812.1|28899_30480_-	ribose transport system ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.4	1.4e-09
AYM84813.1|30482_31790_-	ribose transport system substrate-binding protein	NA	NA	NA	NA	NA
AYM84814.1|31922_32753_-	N-acyl homoserine lactone hydrolase	NA	NA	NA	NA	NA
AYM84815.1|32832_34020_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYM84816.1|34136_35732_-	peptide/nickel transport system substrate-binding protein	NA	NA	NA	NA	NA
AYM84817.1|35788_37456_-	peptide/nickel transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.3	8.4e-18
AYM84818.1|37455_38397_-	peptide/nickel transport system permease protein	NA	NA	NA	NA	NA
AYM84819.1|38396_39383_-	peptide/nickel transport system permease protein	NA	NA	NA	NA	NA
AYM84820.1|39379_40867_-	FAD-dependent urate hydroxylase	NA	NA	NA	NA	NA
AYM84821.1|40877_42104_-	dimethylsulfone monooxygenase	NA	NA	NA	NA	NA
AYM84822.1|42100_43393_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AYM84823.1|43564_44527_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYM84824.1|45322_46333_+	ATP-binding protein	NA	A0A125SJ49	Acidianus_tailed_spindle_virus	31.8	5.6e-17
AYM84825.1|46336_48847_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84826.1|49069_49588_+	sulfonate transport system substrate-binding protein	NA	NA	NA	NA	NA
AYM84827.1|49600_50044_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84828.1|50729_51464_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	30.3	1.8e-25
AYM84829.1|51460_52825_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84830.1|52946_53609_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84831.1|53765_54137_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84832.1|54250_54973_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84833.1|55661_55811_+	Dabb family protein	NA	NA	NA	NA	NA
AYM84834.1|55939_56266_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	50.0	1.6e-18
AYM84835.1|56262_56649_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	44.2	3.0e-19
AYM84836.1|57125_57743_+	outer membrane immunogenic protein	NA	O11861	Bartonella_henselae_phage	37.6	1.6e-11
AYM84837.1|58454_59207_+	damage-inducible mutagenesis protein	NA	NA	NA	NA	NA
AYM84838.1|59220_60639_+	DNA polymerase Y family protein	NA	NA	NA	NA	NA
AYM84839.1|60635_63893_+	error-prone DNA polymerase	NA	A0A0K1Y8T6	Streptomyces_phage	26.7	4.4e-87
AYM84840.1|64627_65302_-	hypothetical protein	NA	NA	NA	NA	NA
AYM84841.1|65735_65918_+	helicase	NA	NA	NA	NA	NA
AYM84842.1|66136_67060_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84843.1|67020_67617_-	mobile mystery protein B	NA	NA	NA	NA	NA
AYM84844.1|67613_68075_-	mobile mystery protein A	NA	NA	NA	NA	NA
AYM84845.1|68463_69066_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84846.1|69077_69479_+	hypothetical protein	NA	NA	NA	NA	NA
69145:69160	attL	ATGGCGGCTTCCGCAA	NA	NA	NA	NA
AYM84847.1|69607_74710_+	SNF2 family helicase	NA	I6WLR1	Burkholderia_virus	41.8	0.0e+00
AYM84848.1|75075_76815_+	plasmid partitioning protein	NA	NA	NA	NA	NA
AYM84849.1|76910_77387_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84850.1|77383_78271_+	hypothetical protein	NA	A0A1X9SH15	Bradyrhizobium_phage	34.4	2.1e-20
AYM84851.1|78267_78597_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84852.1|79058_79646_+	hypothetical protein	NA	NA	NA	NA	NA
AYM84853.1|79984_80809_+	antirestriction protein	NA	A0A1V0EEV1	Caulobacter_phage	47.5	6.3e-51
AYM84854.1|80694_81690_-|integrase	integrase	integrase	A0A2K9VH72	Gordonia_phage	28.0	7.5e-14
AYM84855.1|81686_82634_-|integrase	integrase	integrase	NA	NA	NA	NA
AYM84856.1|82630_83866_-|integrase	integrase	integrase	NA	NA	NA	NA
89143:89158	attR	ATGGCGGCTTCCGCAA	NA	NA	NA	NA
