assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003641285.1_ASM364128v1	CP032816	Salmonella enterica subsp. enterica strain 11TTUC-046 chromosome, complete genome	2	605018-605269	1	PILER-CR	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Orphan	TTTTACAGGGCGGCAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	53	1	1	605072-605130	CP032816.1_605490-605548	NA	2	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA|77aa|down_0|CP032816.1_605457_605688_+,NA|55aa|down_9|CP032816.1_617737_617902_-	NA|424aa|up_9|CP032816.1_591769_593041_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|269aa|up_8|CP032816.1_593238_594045_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|305aa|up_7|CP032816.1_595484_596399_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|285aa|up_6|CP032816.1_596409_597264_-	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|278aa|up_5|CP032816.1_597597_598431_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|316aa|up_4|CP032816.1_598441_599389_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|524aa|up_3|CP032816.1_599628_601200_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|CP032816.1_601729_602500_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP032816.1_602525_603416_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP032816.1_603513_604659_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|77aa|down_0|CP032816.1_605457_605688_+	NA	NA|313aa|down_1|CP032816.1_606228_607167_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_2|CP032816.1_607264_608254_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_3|CP032816.1_608274_609606_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_4|CP032816.1_609672_610881_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_5|CP032816.1_610914_613209_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_6|CP032816.1_613278_614643_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_7|CP032816.1_614957_616289_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_8|CP032816.1_616314_617625_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_9|CP032816.1_617737_617902_-	NA
GCA_003641285.1_ASM364128v1	CP032816	Salmonella enterica subsp. enterica strain 11TTUC-046 chromosome, complete genome	3	926659-927907	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,20,20	20	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA|57aa|down_2|CP032816.1_929182_929353_+,NA|61aa|down_3|CP032816.1_929475_929658_+	NA|381aa|up_9|CP032816.1_912559_913702_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP032816.1_913745_916502_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP032816.1_916559_917855_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP032816.1_917906_920141_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP032816.1_920225_920582_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP032816.1_920547_920844_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP032816.1_921611_922412_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP032816.1_922639_924277_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP032816.1_924359_925658_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP032816.1_925793_926465_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP032816.1_928004_928802_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP032816.1_928891_929254_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP032816.1_929182_929353_+	NA	NA|61aa|down_3|CP032816.1_929475_929658_+	NA	NA|600aa|down_4|CP032816.1_929689_931489_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_5|CP032816.1_931488_933201_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_6|CP032816.1_933276_934011_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_7|CP032816.1_934098_935052_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_8|CP032816.1_935435_938135_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_9|CP032816.1_938696_940232_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_003641285.1_ASM364128v1	CP032816	Salmonella enterica subsp. enterica strain 11TTUC-046 chromosome, complete genome	4	944669-947075	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	39,39,39	39	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|245aa|up_9|CP032816.1_933276_934011_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|CP032816.1_934098_935052_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|CP032816.1_935435_938135_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|CP032816.1_938696_940232_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP032816.1_940248_940851_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP032816.1_940867_941932_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP032816.1_941941_942667_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|236aa|up_2|CP032816.1_942666_943374_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP032816.1_943370_944288_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP032816.1_944290_944584_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP032816.1_947089_948136_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP032816.1_948386_949295_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP032816.1_949304_950744_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP032816.1_950730_951336_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP032816.1_951353_951710_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP032816.1_951900_952212_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP032816.1_952230_952941_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP032816.1_952940_953420_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP032816.1_953416_954466_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP032816.1_954446_955208_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
