The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	1106152	1246302	4985863	head,capsid,tail,holin,lysis,tRNA,portal,plate,transposase,integrase,terminase	Salmonella_phage(53.12%)	162	1211993:1212028	1242890:1242925
AYJ67548.1|1106152_1107242_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	87.7	6.7e-141
AYJ67549.1|1107222_1108334_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.0	8.4e-06
AYJ67550.1|1108956_1109421_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ67551.1|1109493_1110336_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ67552.1|1110347_1112048_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AYJ67553.1|1112125_1113247_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ67554.1|1113321_1114734_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ71268.1|1115081_1116311_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	89.2	1.0e-214
AYJ67555.1|1116637_1117648_-|integrase	integrase	integrase	F1BUN9	Cronobacter_phage	85.7	9.5e-174
AYJ67556.1|1117647_1118214_-	Repressor protein CI	NA	F1BUN8	Cronobacter_phage	59.7	1.1e-65
AYJ67557.1|1118359_1118563_+	hypothetical protein	NA	F1BUN7	Cronobacter_phage	52.0	1.0e-10
AYJ67558.1|1118600_1119104_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	71.3	1.5e-58
AYJ67559.1|1119113_1119341_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ67560.1|1119330_1119756_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
AYJ67561.1|1119755_1120157_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
AYJ67562.1|1120224_1120455_+	DUF2732 family protein	NA	NA	NA	NA	NA
AYJ67563.1|1120445_1120775_+	DUF3850 domain-containing protein	NA	Q2P9X4	Enterobacteria_phage	45.2	2.0e-11
AYJ67564.1|1120764_1121598_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	F1BUN1	Cronobacter_phage	68.3	1.6e-105
AYJ67565.1|1121594_1123616_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.9	1.9e-298
AYJ67566.1|1123728_1123947_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	49.1	3.6e-06
AYJ67567.1|1123920_1124244_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
AYJ67568.1|1124240_1125302_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.1	6.0e-163
AYJ67569.1|1125298_1127074_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	82.6	7.0e-289
AYJ67570.1|1127234_1128038_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.4	4.1e-79
AYJ67571.1|1128099_1129122_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
AYJ67572.1|1129125_1129827_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
AYJ67573.1|1129872_1130376_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	82.0	5.2e-64
AYJ67574.1|1130372_1130879_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.8	5.2e-64
AYJ67575.1|1130875_1131583_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.9	6.8e-102
AYJ67576.1|1131579_1132707_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
AYJ67577.1|1132703_1133159_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
AYJ67578.1|1133168_1133462_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
AYJ67579.1|1133458_1133800_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
AYJ67580.1|1133799_1134132_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	6.7e-36
AYJ67581.1|1134103_1134292_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	80.6	1.1e-22
AYJ67582.1|1134278_1134536_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
AYJ67583.1|1134723_1136694_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	68.8	9.2e-266
AYJ67584.1|1136690_1137020_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
AYJ67585.1|1137016_1138201_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
AYJ67586.1|1138187_1138781_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
AYJ67587.1|1138790_1140896_+|tail	phage tail protein	tail	S4TP62	Salmonella_phage	69.0	8.8e-198
AYJ71269.1|1141004_1141463_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	93.2	1.6e-75
AYJ67588.1|1141452_1142178_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.0	5.5e-67
AYJ67589.1|1142149_1142695_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
AYJ67590.1|1142694_1144398_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	4.9e-223
AYJ67591.1|1145078_1146197_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ67592.1|1147822_1148071_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ67593.1|1148282_1149329_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ67594.1|1149318_1150359_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	92.7	1.7e-189
AYJ67595.1|1150362_1150995_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.1	1.6e-65
AYJ67596.1|1151111_1151354_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	97.5	6.8e-38
AYJ67597.1|1151386_1151896_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	93.5	1.9e-82
AYJ67598.1|1151903_1152200_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	88.5	1.4e-21
AYJ67599.1|1152317_1152659_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYJ67600.1|1152726_1152960_+	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	97.4	8.3e-33
AYJ67601.1|1152959_1153187_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	3.5e-36
AYJ67602.1|1153183_1154041_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.9	1.9e-162
AYJ67603.1|1154037_1156452_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.6	0.0e+00
AYJ67604.1|1156604_1156793_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	96.8	1.6e-26
AYJ67605.1|1156731_1157037_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
AYJ67606.1|1157096_1157828_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ67607.1|1158167_1159235_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ71270.1|1159237_1159552_+	DUF4325 domain-containing protein	NA	NA	NA	NA	NA
AYJ67608.1|1159551_1160046_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ67609.1|1160131_1161157_-|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	87.9	1.1e-172
AYJ67610.1|1161156_1162923_-	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYJ67611.1|1163065_1163899_+|capsid	capsid protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	6.3e-123
AYJ67612.1|1163915_1164974_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.4	2.9e-181
AYJ67613.1|1164977_1165628_+	hypothetical protein	NA	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYJ67614.1|1165723_1166188_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.6	6.4e-77
AYJ67615.1|1166187_1166391_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYJ67616.1|1166394_1166610_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYJ71271.1|1166629_1167103_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYJ67617.1|1167104_1167482_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	3.9e-16
AYJ67618.1|1167478_1167907_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	75.9	1.4e-46
AYJ67619.1|1167836_1168040_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	76.1	1.0e-23
AYJ67620.1|1168002_1168434_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	92.3	8.4e-71
AYJ67621.1|1168426_1168873_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	83.6	6.2e-61
AYJ67622.1|1168941_1169520_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	85.9	2.1e-93
AYJ67623.1|1169516_1169876_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	86.6	9.5e-52
AYJ67624.1|1169862_1170771_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	90.1	1.7e-142
AYJ67625.1|1170763_1171369_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.5	1.5e-110
AYJ67626.1|1172926_1173532_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	80.9	1.2e-86
AYJ67627.1|1173685_1174030_-	hypothetical protein	NA	I3PGW0	Xanthomonas_phage	33.3	2.8e-08
AYJ67628.1|1174097_1174664_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.8	3.8e-87
AYJ67629.1|1174806_1175979_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	2.1e-204
AYJ67630.1|1175988_1176504_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	94.2	2.4e-88
AYJ67631.1|1176558_1176861_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	5.3e-40
AYJ67632.1|1176875_1176995_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYJ67633.1|1176987_1180065_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	69.3	0.0e+00
AYJ67634.1|1180061_1180547_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.6	4.8e-67
AYJ67635.1|1180543_1181644_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.5	3.4e-177
AYJ67636.1|1181712_1181931_+	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	77.8	7.5e-28
AYJ67637.1|1181957_1182440_-	hypothetical protein	NA	Q19UP0	Mannheimia_phage	33.1	1.7e-16
AYJ71272.1|1182997_1184161_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYJ67638.1|1184168_1186349_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
AYJ67639.1|1186345_1187755_-	type I secretion protein TolC	NA	NA	NA	NA	NA
AYJ67640.1|1187819_1199294_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
AYJ71273.1|1199913_1200396_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
AYJ67641.1|1200545_1201022_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AYJ67642.1|1201011_1201302_+	RnfH family protein	NA	NA	NA	NA	NA
AYJ67643.1|1201467_1201806_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AYJ67644.1|1201954_1203616_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AYJ71275.1|1203701_1204580_-	NAD(+) kinase	NA	NA	NA	NA	NA
AYJ71274.1|1204703_1205294_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AYJ67645.1|1205328_1205934_-	cytoplasmic protein	NA	NA	NA	NA	NA
AYJ67646.1|1206053_1207295_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AYJ67647.1|1207359_1208151_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AYJ67648.1|1208096_1208393_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ67649.1|1208316_1209678_+	signal recognition particle protein	NA	NA	NA	NA	NA
AYJ71276.1|1209991_1210240_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AYJ67650.1|1210258_1210807_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AYJ67651.1|1210851_1211619_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AYJ67652.1|1211659_1212007_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
1211993:1212028	attL	GAGCGTCTTAACTAAGAACGCGCTTTCGCAACATCC	NA	NA	NA	NA
AYJ67653.1|1212151_1212370_-	DNA-binding transcriptional regulator	NA	Q37973	Salmonella_virus	100.0	1.2e-38
AYJ67654.1|1212445_1213615_-	phage late control D family protein	NA	A0A0M5M5V5	Salmonella_phage	97.4	1.7e-211
AYJ67655.1|1213611_1214097_-|tail	phage tail protein	tail	Q6K1G5	Salmonella_virus	99.4	1.0e-85
AYJ67656.1|1214111_1216556_-|tail	phage tail tape measure protein	tail	Q6K1G6	Salmonella_virus	94.5	0.0e+00
AYJ67657.1|1216548_1216704_-|tail	GpE family phage tail protein	tail	Q6K1G8	Salmonella_virus	98.0	8.8e-23
AYJ67658.1|1216700_1217036_-|tail	phage tail assembly protein	tail	A0A218M4J8	Erwinia_phage	97.3	2.6e-51
AYJ67659.1|1217098_1217617_-|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	99.4	1.4e-93
AYJ67660.1|1217632_1218811_-|tail	phage tail sheath protein	tail	S4TRX2	Salmonella_phage	99.5	2.9e-222
AYJ67661.1|1218945_1219494_-|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	100.0	9.9e-101
AYJ67662.1|1219506_1221483_-|tail	phage tail protein	tail	S4TP62	Salmonella_phage	99.2	0.0e+00
AYJ67663.1|1221493_1222024_-|tail	phage tail protein I	tail	Q6K1H3	Salmonella_virus	97.2	1.5e-101
AYJ67664.1|1222016_1222925_-|plate	baseplate assembly protein	plate	Q6K1H4	Salmonella_virus	98.3	7.7e-159
AYJ67665.1|1222931_1223279_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	96.5	1.0e-55
AYJ67666.1|1223275_1223917_-|plate	phage baseplate assembly protein V	plate	Q6K1H6	Salmonella_virus	96.7	5.5e-111
AYJ67667.1|1223985_1224435_-	phage virion morphogenesis protein	NA	A0A0M3UL83	Salmonella_phage	94.6	7.4e-70
AYJ67668.1|1224427_1224895_-|tail	phage tail protein	tail	S4TTA5	Salmonella_phage	100.0	1.1e-84
AYJ67669.1|1224857_1225031_-|lysis	phage lysis protein	lysis	S4TNY4	Salmonella_phage	98.2	2.8e-25
AYJ67670.1|1225002_1225416_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A0M4R2N5	Salmonella_phage	97.8	1.2e-45
AYJ67671.1|1225412_1225910_-	lysozyme	NA	S4TUB1	Salmonella_phage	99.4	1.2e-92
AYJ67672.1|1225896_1226193_-|holin	holin	holin	Q6K1I2	Salmonella_virus	100.0	5.8e-47
AYJ67673.1|1226196_1226400_-|tail	phage tail protein	tail	A0A0M3ULF4	Salmonella_phage	100.0	3.6e-32
AYJ67674.1|1226399_1226906_-|head	head completion/stabilization protein	head	S4TNY1	Salmonella_phage	98.8	2.9e-91
AYJ67675.1|1226999_1227749_-|terminase	terminase	terminase	Q6K1I5	Salmonella_virus	98.4	1.5e-128
AYJ67676.1|1227752_1228820_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	99.7	1.2e-198
AYJ67677.1|1228896_1229751_-|capsid	capsid scaffolding protein	capsid	S4TP53	Salmonella_phage	94.7	3.6e-150
AYJ67678.1|1229916_1231689_+	oxidoreductase	NA	S4TT96	Salmonella_phage	99.8	0.0e+00
AYJ67679.1|1231685_1232432_+	hypothetical protein	NA	Q6K1I9	Salmonella_virus	96.8	6.6e-140
AYJ67680.1|1232428_1233451_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	99.7	1.5e-198
AYJ67681.1|1233585_1233768_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ67682.1|1233972_1234167_-	hypothetical protein	NA	S4TRZ0	Salmonella_phage	79.7	2.5e-19
AYJ67683.1|1234300_1234510_-	hypothetical protein	NA	Q6K1F0	Salmonella_virus	97.1	2.6e-33
AYJ67684.1|1234705_1234939_-	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	98.7	8.0e-36
AYJ67685.1|1234942_1235125_-	hypothetical protein	NA	A0A0M5M1G5	Salmonella_phage	100.0	4.1e-27
AYJ67686.1|1235242_1237465_-	replication endonuclease	NA	A0A0M3ULG0	Salmonella_phage	95.9	0.0e+00
AYJ67687.1|1237461_1238292_-	hypothetical protein	NA	A0A0M4RCP6	Salmonella_phage	97.1	7.1e-159
AYJ67688.1|1238295_1238574_-	hypothetical protein	NA	A0A0M4R2Q0	Salmonella_phage	87.0	2.0e-41
AYJ67689.1|1238574_1238796_-	TraR/DksA family transcriptional regulator	NA	A0A0M4S5Q7	Salmonella_phage	98.6	7.1e-34
AYJ67690.1|1238795_1239023_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	97.3	9.9e-31
AYJ67691.1|1239092_1239293_-	hypothetical protein	NA	A0A0M5M7U3	Salmonella_phage	97.0	3.0e-31
AYJ67692.1|1239279_1239507_-	DUF2724 domain-containing protein	NA	A0A0M4RTI3	Salmonella_phage	97.3	1.2e-36
AYJ67693.1|1239514_1240024_-	phage regulatory CII family protein	NA	Q6K1F8	Salmonella_virus	98.8	9.5e-90
AYJ67694.1|1240074_1240428_-	Cro/Cl family transcriptional regulator	NA	Q6K1F9	Salmonella_virus	100.0	2.3e-58
AYJ67695.1|1240541_1241387_+	phage repressor protein CI	NA	Q6K1G0	Salmonella_virus	73.7	4.9e-115
AYJ67696.1|1241395_1241734_+	DUF2511 domain-containing protein	NA	A0A0M3ULF8	Salmonella_phage	72.1	1.4e-41
AYJ67697.1|1241758_1242808_+|integrase	integrase	integrase	A0A0M4S6G4	Salmonella_phage	90.3	5.4e-188
AYJ67698.1|1243060_1244281_-	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
1242890:1242925	attR	GAGCGTCTTAACTAAGAACGCGCTTTCGCAACATCC	NA	NA	NA	NA
AYJ67699.1|1244273_1244792_-	YfiR family protein	NA	NA	NA	NA	NA
AYJ67700.1|1245231_1246302_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
>prophage 2
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	1504569	1541998	4985863	coat,tail,lysis,portal,protease,terminase	Salmonella_phage(77.19%)	59	NA	NA
AYJ67924.1|1504569_1505508_+|protease	omptin family outer membrane protease PgtE	protease	NA	NA	NA	NA
AYJ67925.1|1505529_1505760_-	hypothetical protein	NA	C6ZR23	Salmonella_phage	81.8	1.2e-10
AYJ67926.1|1505769_1505973_-	hypothetical protein	NA	C6ZR24	Salmonella_phage	95.5	4.7e-32
AYJ67927.1|1506069_1506705_-	Eac protein	NA	A0A075B8I7	Enterobacteria_phage	88.2	6.3e-107
AYJ67928.1|1506949_1507216_-	hypothetical protein	NA	A0A1V0E5L9	Salmonella_phage	96.6	1.1e-44
AYJ67929.1|1508187_1508445_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	95.3	5.9e-40
AYJ67930.1|1508446_1509079_-	ead/Ea22-like family protein	NA	A0A1R3Y5T1	Salmonella_virus	44.5	2.1e-25
AYJ67931.1|1509075_1509486_-	hypothetical protein	NA	A0A1R3Y5S0	Salmonella_virus	94.1	5.7e-69
AYJ67932.1|1509482_1509653_-	DUF2737 family protein	NA	A0A220NQV6	Salmonella_phage	100.0	6.1e-25
AYJ67933.1|1509663_1509957_-	DUF2856 family protein	NA	A0A2H4FNA1	Salmonella_phage	97.9	6.1e-49
AYJ67934.1|1509972_1510521_-	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	99.5	1.0e-105
AYJ67935.1|1510529_1511036_-	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	90.5	7.3e-82
AYJ67936.1|1511036_1511744_-	recombinase	NA	K7PKU3	Enterobacteria_phage	88.9	9.4e-120
AYJ67937.1|1511752_1511941_-	hypothetical protein	NA	C6ZR38	Salmonella_phage	98.4	3.8e-28
AYJ67938.1|1511937_1512051_-	host cell division inhibitory peptide Kil	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
AYJ67939.1|1512043_1512190_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	C6ZR40	Salmonella_phage	97.9	1.5e-19
AYJ67940.1|1512416_1512917_-	HNH endonuclease	NA	A5H1L2	Xanthomonas_virus	44.2	2.6e-31
AYJ67941.1|1513000_1513195_-	restriction endonuclease	NA	E7C9Q6	Salmonella_phage	100.0	2.5e-30
AYJ67942.1|1513273_1513612_-	hypothetical protein	NA	E7C9Q7	Salmonella_phage	96.4	1.0e-55
AYJ67943.1|1513963_1514614_-	LexA family transcriptional regulator	NA	B1B6L9	Salmonella_phage	99.5	2.1e-121
AYJ67944.1|1514694_1514880_+	hypothetical protein	NA	Q5G8T3	Enterobacteria_phage	100.0	5.4e-27
AYJ67945.1|1514986_1515277_+	hypothetical protein	NA	I6RSP4	Salmonella_phage	100.0	2.4e-45
AYJ67946.1|1515445_1516294_+	replication protein	NA	C6ZR51	Salmonella_phage	95.7	8.5e-152
AYJ67947.1|1516404_1518285_+	bifunctional DNA primase/helicase	NA	A0A0M4R313	Salmonella_phage	99.2	0.0e+00
AYJ67948.1|1518285_1518564_+	hypothetical protein	NA	C6ZR54	Salmonella_phage	97.8	1.9e-47
AYJ67949.1|1518619_1519075_+	recombination protein NinB	NA	C6ZR55	Salmonella_phage	95.9	1.8e-76
AYJ67950.1|1519071_1519245_+	protein ninD	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
AYJ67951.1|1519211_1519388_+	NinE family protein	NA	I6RSQ2	Salmonella_phage	98.3	1.8e-27
AYJ67952.1|1519390_1519792_+	hypothetical protein	NA	G9L690	Escherichia_phage	85.0	2.7e-63
AYJ67953.1|1519784_1519961_+	protein ninF	NA	I6S668	Salmonella_phage	93.0	3.1e-24
AYJ67954.1|1519953_1520172_+	hypothetical protein	NA	S4TUE0	Salmonella_phage	68.1	5.6e-23
AYJ67955.1|1520172_1520463_+	DUF1364 domain-containing protein	NA	A0A220NQY2	Salmonella_phage	100.0	1.7e-51
AYJ67956.1|1520459_1520855_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A220NQY4	Salmonella_phage	96.2	5.5e-69
AYJ67957.1|1520851_1521055_+	protein ninH	NA	I6RSQ6	Salmonella_phage	100.0	7.2e-33
AYJ67958.1|1521035_1521215_+	hypothetical protein	NA	E7C9S6	Salmonella_phage	96.6	4.6e-23
AYJ67959.1|1521211_1521835_+	antitermination protein	NA	C6ZR62	Salmonella_phage	99.0	1.5e-113
AYJ67960.1|1522108_1522306_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ67961.1|1522393_1522912_+	endodeoxyribonuclease	NA	A0A1V0E5R7	Salmonella_phage	100.0	5.9e-95
AYJ67962.1|1523135_1523408_+	hypothetical protein	NA	A0A1V0E5R8	Salmonella_phage	100.0	1.1e-41
AYJ67963.1|1523407_1523905_+	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	100.0	1.4e-93
AYJ67964.1|1523901_1524369_+|lysis	lysis protein	lysis	A0A1V0E5Q6	Salmonella_phage	98.7	3.8e-77
AYJ67965.1|1524403_1524628_+	hypothetical protein	NA	A0A1V0E5I0	Salmonella_phage	88.7	1.6e-25
AYJ67966.1|1524581_1525112_+	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	97.2	5.3e-91
AYJ67967.1|1525368_1525611_+	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
AYJ67968.1|1525612_1526101_+	hypothetical protein	NA	A0A1B2IBG8	Erwinia_phage	34.2	5.1e-16
AYJ67969.1|1526106_1526595_+	DNA-packaging protein	NA	A8CGG1	Salmonella_phage	100.0	2.9e-88
AYJ67970.1|1526572_1528072_+|terminase	terminase	terminase	A0A1R3Y5N2	Salmonella_virus	100.0	2.8e-307
AYJ67971.1|1528071_1530249_+|portal	portal protein	portal	I6R968	Salmonella_phage	98.2	0.0e+00
AYJ67972.1|1530262_1531174_+	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	99.7	1.1e-160
AYJ67973.1|1531173_1532466_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	99.3	1.8e-241
AYJ67974.1|1532506_1533067_+	hypothetical protein	NA	I6S1J7	Salmonella_phage	98.4	7.0e-102
AYJ67975.1|1533050_1533551_+	hypothetical protein	NA	I1TEJ0	Salmonella_phage	98.2	1.2e-89
AYJ67976.1|1533510_1534929_+	hypothetical protein	NA	I1TEJ1	Salmonella_phage	98.7	7.3e-273
AYJ67977.1|1534932_1535571_+|tail	phage tail protein	tail	A0A088CPT1	Enterobacteria_phage	94.8	3.4e-84
AYJ67978.1|1535570_1536026_+	DUF2824 family protein	NA	E7C9U3	Salmonella_phage	99.3	8.8e-87
AYJ67979.1|1536028_1536718_+	DNA transfer protein	NA	B9UDK9	Salmonella_phage	91.7	5.6e-93
AYJ71284.1|1536760_1538098_+	DNA transfer protein	NA	I1TEJ5	Salmonella_phage	98.0	7.7e-240
AYJ67980.1|1538097_1540164_+	DNA transfer protein	NA	B9UDL1	Salmonella_phage	81.1	1.1e-288
AYJ67981.1|1540240_1541998_+	hypothetical protein	NA	A0A0M4RD19	Salmonella_phage	51.6	1.8e-55
>prophage 3
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	1788706	1797877	4985863	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYJ68206.1|1788706_1789654_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.3e-23
AYJ68207.1|1789637_1790369_+	ABC transporter permease	NA	NA	NA	NA	NA
AYJ68208.1|1790349_1790457_-	protein YohO	NA	NA	NA	NA	NA
AYJ68209.1|1790516_1791248_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYJ68210.1|1791470_1793156_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AYJ68211.1|1793152_1793872_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYJ68212.1|1793918_1794386_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.0e-74
AYJ68213.1|1794442_1794973_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AYJ68214.1|1795144_1795603_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYJ68215.1|1795843_1797877_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	1970660	1977892	4985863		Morganella_phage(33.33%)	8	NA	NA
AYJ68373.1|1970660_1971080_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AYJ68374.1|1971082_1972351_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.2	1.9e-227
AYJ68375.1|1972796_1973009_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AYJ71298.1|1973019_1973208_+	cold-shock protein	NA	NA	NA	NA	NA
AYJ68376.1|1973467_1974652_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.1	5.1e-110
AYJ68377.1|1975301_1975613_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ68378.1|1975692_1976388_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
AYJ68379.1|1976461_1977892_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	2081854	2122456	4985863	tail,head,lysis,integrase	Salmonella_phage(17.39%)	62	2084062:2084091	2125688:2125717
AYJ68491.1|2081854_2082085_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	58.8	8.5e-14
AYJ68492.1|2082222_2082597_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AYJ68493.1|2082597_2083473_+	copper resistance D family protein	NA	NA	NA	NA	NA
AYJ68494.1|2083489_2083843_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AYJ68495.1|2083901_2084021_+	hypothetical protein	NA	NA	NA	NA	NA
2084062:2084091	attL	ACAGGAATCGTATTCGGTCTCTTTTTATTT	NA	NA	NA	NA
AYJ68496.1|2084226_2085306_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.8	1.3e-101
AYJ68497.1|2085280_2085559_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.4e-10
AYJ71303.1|2085619_2085856_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ68498.1|2086146_2086332_-	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	59.6	2.9e-12
AYJ68499.1|2086378_2087209_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	2.9e-104
AYJ68500.1|2087201_2089892_-	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	75.6	9.8e-117
AYJ68501.1|2090032_2090368_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ68502.1|2090442_2090727_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
AYJ68503.1|2091146_2091371_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ68504.1|2091684_2092110_-	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
AYJ68505.1|2092206_2092461_+	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
AYJ68506.1|2092447_2092942_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ68507.1|2092985_2093993_+	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	68.1	2.4e-124
AYJ68508.1|2093985_2094447_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	74.8	7.8e-67
AYJ68509.1|2094459_2094855_+	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	38.1	1.7e-17
AYJ68510.1|2094851_2095124_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ68511.1|2095327_2095483_+	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	82.4	2.0e-14
AYJ68512.1|2095732_2095981_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ68513.1|2096044_2096644_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	83.9	5.0e-98
AYJ68514.1|2096640_2096835_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	6.1e-13
AYJ68515.1|2096831_2097113_+	DUF1364 family protein	NA	K7P7Q1	Enterobacteria_phage	79.1	1.7e-35
AYJ68516.1|2097109_2097664_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	64.6	2.8e-63
AYJ68517.1|2097609_2097867_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ68518.1|2097909_2098086_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0M3LQ86	Mannheimia_phage	60.3	1.2e-12
AYJ68519.1|2098136_2098544_+	type II toxin-antitoxin system HicB family antitoxin	NA	F1C593	Cronobacter_phage	63.0	1.4e-38
AYJ71304.1|2098693_2098996_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYJ68520.1|2098973_2099513_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	71.8	3.4e-77
AYJ68521.1|2099613_2100078_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	81.7	6.3e-56
AYJ68522.1|2100303_2100486_+	DUF826 domain-containing protein	NA	NA	NA	NA	NA
AYJ68523.1|2100556_2101186_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.1	9.6e-108
AYJ68524.1|2101188_2102808_+	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	81.2	1.5e-261
AYJ68525.1|2102807_2104328_+	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	43.9	3.1e-104
AYJ68526.1|2104368_2105058_+|head	phage head morphogenesis protein	head	H9C0V1	Aeromonas_phage	49.6	4.5e-58
AYJ68527.1|2105054_2106401_+	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	37.2	4.2e-68
AYJ68528.1|2106402_2106885_+	hypothetical protein	NA	A0A1X9SFC3	Acinetobacter_phage	48.8	1.1e-26
AYJ68529.1|2106884_2107913_+	DUF2184 domain-containing protein	NA	A0A219YBB0	Aeromonas_phage	48.7	2.3e-82
AYJ68530.1|2107916_2108264_+	hypothetical protein	NA	H9C0V9	Aeromonas_phage	40.2	3.0e-10
AYJ68531.1|2108270_2108726_+	DUF4054 domain-containing protein	NA	A0A068CGG9	Acinetobacter_phage	40.8	2.4e-15
AYJ68532.1|2108719_2109304_+	hypothetical protein	NA	H9C0W2	Aeromonas_phage	30.6	3.2e-17
AYJ68533.1|2109300_2109666_+	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	39.7	8.8e-21
AYJ68534.1|2109650_2110196_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ68535.1|2110176_2111661_+	DUF3383 domain-containing protein	NA	A0A077KGV4	Edwardsiella_phage	41.0	4.0e-96
AYJ68536.1|2111661_2112108_+	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
AYJ68537.1|2112107_2112512_+	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.8	8.2e-20
AYJ68538.1|2112553_2112736_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AYJ68539.1|2112719_2113904_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ68540.1|2113907_2114891_+	lytic transglycosylase domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	67.1	6.4e-50
AYJ68541.1|2114887_2115598_+	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.6	5.0e-28
AYJ68542.1|2115597_2115900_+	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	50.5	2.4e-24
AYJ68543.1|2115896_2116766_+	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
AYJ68544.1|2116746_2117424_+	oxidoreductase	NA	A0A077KAY0	Edwardsiella_phage	36.0	1.6e-31
AYJ68545.1|2117436_2117793_+	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	1.6e-19
AYJ68546.1|2117789_2119031_+	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	49.9	9.1e-102
AYJ68547.1|2119032_2119635_+	DUF2612 domain-containing protein	NA	H9C0Y0	Aeromonas_phage	43.2	5.9e-30
AYJ68548.1|2119624_2121076_+|tail	tail fiber protein	tail	E5G6P0	Salmonella_phage	70.2	7.3e-42
AYJ68549.1|2121072_2121897_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	93.4	1.2e-150
AYJ68550.1|2121886_2122456_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.4	4.2e-94
2125688:2125717	attR	ACAGGAATCGTATTCGGTCTCTTTTTATTT	NA	NA	NA	NA
>prophage 6
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	2680708	2729042	4985863	protease,capsid,tRNA,lysis,portal,head,tail,terminase	Salmonella_phage(43.33%)	68	NA	NA
AYJ69083.1|2680708_2683096_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AYJ69084.1|2683111_2684095_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.1e-33
AYJ71331.1|2684231_2684276_-|tRNA	phenylalanyl--tRNA ligase operon leader peptide	tRNA	NA	NA	NA	NA
AYJ69085.1|2684396_2684753_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AYJ69086.1|2684803_2685001_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AYJ69087.1|2685096_2685639_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.7	4.8e-15
AYJ69088.1|2685642_2687571_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	1.6e-129
AYJ69089.1|2687902_2689171_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	95.0	2.9e-236
AYJ69090.1|2689173_2689593_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.8	3.8e-36
AYJ69091.1|2689829_2691128_-|tail	phage tail protein	tail	I6R0Q9	Salmonella_phage	99.1	5.0e-244
AYJ69092.1|2691138_2692098_-	hypothetical protein	NA	H6WRW5	Salmonella_phage	99.7	2.8e-183
AYJ69093.1|2692106_2694827_-	DUF1983 domain-containing protein	NA	S4TTF5	Salmonella_phage	99.9	0.0e+00
AYJ69094.1|2694826_2695225_-	hypothetical protein	NA	S4TR39	Salmonella_phage	94.7	2.9e-70
AYJ69095.1|2695231_2695816_-	hypothetical protein	NA	S4TND4	Salmonella_phage	96.9	1.0e-103
AYJ69096.1|2695815_2696409_-	hypothetical protein	NA	S4TSP7	Salmonella_phage	99.0	4.3e-110
AYJ69097.1|2696571_2696826_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69098.1|2697196_2700487_-|tail	phage tail tape measure protein	tail	Q9MCS3	Enterobacteria_phage	69.6	0.0e+00
AYJ69099.1|2700550_2701150_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69100.1|2701217_2701514_-	DUF4035 domain-containing protein	NA	S4TND7	Salmonella_phage	100.0	2.9e-46
AYJ69101.1|2701525_2701897_-|tail	phage tail protein	tail	S4TSQ0	Salmonella_phage	90.9	4.4e-60
AYJ69102.1|2701924_2702629_-|tail	phage tail protein	tail	K7PHL2	Enterobacterial_phage	74.4	4.4e-93
AYJ69103.1|2702685_2703033_-	DUF3168 domain-containing protein	NA	S4TTG3	Salmonella_phage	96.5	5.5e-57
AYJ69104.1|2703029_2703479_-	HK97 gp10 family phage protein	NA	S4TR46	Salmonella_phage	95.3	3.5e-72
AYJ69105.1|2703475_2703814_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	70.5	6.6e-39
AYJ69106.1|2703823_2704150_-|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	85.2	5.2e-49
AYJ69107.1|2704149_2704374_-	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	66.0	2.5e-10
AYJ69108.1|2704417_2705635_-|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	88.9	6.0e-199
AYJ69109.1|2705644_2706493_-|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	87.9	1.3e-131
AYJ69110.1|2706506_2707814_-|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	85.1	9.3e-214
AYJ69111.1|2707813_2709556_-|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	45.3	5.9e-139
AYJ69112.1|2709509_2709974_-|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	62.1	1.3e-48
AYJ69113.1|2710106_2710451_-	HNH endonuclease	NA	K7P7P6	Enterobacteria_phage	75.7	1.0e-47
AYJ69114.1|2710569_2711037_-|lysis	lysis protein	lysis	A0A1V0E5Q6	Salmonella_phage	98.7	3.8e-77
AYJ69115.1|2711033_2711531_-	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	100.0	1.4e-93
AYJ69116.1|2711530_2711803_-	hypothetical protein	NA	A0A1V0E5R8	Salmonella_phage	98.9	5.7e-41
AYJ69117.1|2712026_2712545_-	endodeoxyribonuclease	NA	A0A1V0E5R7	Salmonella_phage	100.0	5.9e-95
AYJ69118.1|2712632_2712830_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69119.1|2713097_2713871_-	antitermination protein	NA	Q76H66	Enterobacteria_phage	99.6	5.3e-132
AYJ69120.1|2713867_2714050_-	hypothetical protein	NA	C6ZR61	Salmonella_phage	95.0	6.1e-23
AYJ69121.1|2714037_2714508_-	hypothetical protein	NA	C6ZR60	Salmonella_phage	100.0	7.9e-91
AYJ69122.1|2714488_2714725_-	hypothetical protein	NA	C6ZR59	Salmonella_phage	88.5	3.4e-34
AYJ69123.1|2714717_2714888_-	NinF family protein	NA	I6R994	Salmonella_phage	87.0	7.4e-23
AYJ69124.1|2714884_2715061_-	NinE family protein	NA	I6RSI9	Salmonella_phage	98.3	1.5e-26
AYJ69125.1|2715057_2715468_-	recombination protein NinB	NA	A0A0P0ZCW6	Stx2-converting_phage	100.0	3.2e-72
AYJ69126.1|2715439_2715796_-	hypothetical protein	NA	K7PHN9	Enterobacterial_phage	96.5	4.6e-59
AYJ69127.1|2716012_2716093_-	histone H1	NA	Q9MCP6	Enterobacteria_phage	96.2	1.7e-06
AYJ69128.1|2716092_2717544_-	helicase DnaB	NA	Q7Y2K5	Escherichia_phage	99.2	7.2e-276
AYJ69129.1|2717518_2718409_-	DNA replication protein	NA	Q716D3	Shigella_phage	99.3	3.8e-158
AYJ69130.1|2718591_2718870_-	hypothetical protein	NA	K7P8A8	Enterobacteria_phage	100.0	1.1e-42
AYJ69131.1|2718978_2719173_-	Cro/Cl family transcriptional regulator	NA	K7PLQ6	Enterobacteria_phage	98.4	6.7e-28
AYJ69132.1|2719279_2719996_+	helix-turn-helix domain-containing protein	NA	K7PGR7	Enterobacteria_phage	100.0	9.2e-123
AYJ69133.1|2720013_2720382_+	hypothetical protein	NA	K7P6G1	Enterobacteria_phage	99.2	1.3e-56
AYJ69134.1|2720957_2721263_+	hypothetical protein	NA	A5VW99	Enterobacteria_phage	91.8	2.9e-25
AYJ71332.1|2721271_2721538_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69135.1|2721593_2722043_+	hypothetical protein	NA	I6RSN8	Salmonella_phage	89.3	8.7e-71
AYJ69136.1|2722121_2722592_+	hypothetical protein	NA	A0A1I9LJN4	Stx_converting_phage	98.7	3.1e-87
AYJ69137.1|2722681_2722957_+	hypothetical protein	NA	K7PGS9	Enterobacteria_phage	100.0	1.6e-46
AYJ69138.1|2723211_2723919_+	recombinase	NA	K7PKU3	Enterobacteria_phage	88.5	1.6e-119
AYJ69139.1|2723918_2724203_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
AYJ69140.1|2724249_2724543_+	DUF2856 family protein	NA	Q76H42	Enterobacteria_phage	97.9	8.8e-48
AYJ69141.1|2724553_2724724_+	DUF2737 family protein	NA	I6S642	Salmonella_phage	100.0	6.1e-25
AYJ69142.1|2724720_2725218_+	ead/Ea22-like family protein	NA	A0A0N6WGF1	Salmonella_phage	82.4	3.5e-73
AYJ69143.1|2725214_2725445_+	hypothetical protein	NA	G8C7U9	Escherichia_phage	89.3	5.5e-29
AYJ69144.1|2725441_2725687_+	hypothetical protein	NA	A0A1V0E5L1	Salmonella_phage	92.3	1.0e-33
AYJ69145.1|2725683_2726451_+	ead/Ea22-like family protein	NA	A0A075B8K3	Enterobacteria_phage	60.1	1.3e-69
AYJ69146.1|2726452_2726710_+	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	95.3	5.9e-40
AYJ69147.1|2727639_2727885_+	helix-turn-helix domain-containing protein	NA	A0A1P8DTG1	Proteus_phage	56.7	9.1e-14
AYJ69148.1|2727830_2729042_-	DUF4102 domain-containing protein	NA	I6R9B6	Salmonella_phage	99.3	2.1e-236
>prophage 7
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	2960945	3007438	4985863	tail,lysis,head,protease,integrase,terminase	Salmonella_phage(45.28%)	69	2957883:2957896	3008360:3008373
2957883:2957896	attL	CACGCTGCAAACGC	NA	NA	NA	NA
AYJ71343.1|2960945_2961266_-	hypothetical protein	NA	E5G6P3	Salmonella_phage	76.6	6.8e-09
AYJ69393.1|2961289_2961526_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69394.1|2961916_2962792_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA	NA
AYJ69395.1|2963013_2963694_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	2.6e-82
AYJ69396.1|2964082_2964349_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	78.4	7.3e-33
AYJ69397.1|2964405_2965053_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ71344.1|2965095_2965293_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	97.0	1.4e-09
AYJ69398.1|2965918_2966311_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	8.5e-14
AYJ69399.1|2966420_2967029_-	DUF4376 domain-containing protein	NA	S5MBX6	Escherichia_phage	44.7	1.1e-31
AYJ69400.1|2967091_2967277_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69401.1|2967525_2968044_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	53.8	2.0e-47
AYJ69402.1|2968058_2969591_-|tail	phage tail protein	tail	S4TP62	Salmonella_phage	66.2	1.4e-128
AYJ69403.1|2969590_2970271_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.0	5.5e-125
AYJ69404.1|2970267_2971467_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	96.7	5.5e-213
AYJ69405.1|2971467_2971821_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	95.7	3.0e-58
AYJ69406.1|2971820_2972573_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	69.8	9.7e-91
AYJ69407.1|2972691_2973147_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69408.1|2973230_2973563_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.1	1.7e-23
AYJ69409.1|2973559_2974627_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	91.5	2.0e-174
AYJ69410.1|2974629_2974932_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
AYJ69411.1|2974931_2975507_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	99.5	9.1e-97
AYJ69412.1|2975506_2977516_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	95.2	0.0e+00
AYJ71345.1|2977505_2977682_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	72.9	4.7e-12
AYJ69413.1|2977693_2978146_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	78.7	1.3e-61
AYJ69414.1|2978149_2978590_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	73.3	2.5e-54
AYJ69415.1|2978601_2979747_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.8	5.9e-164
AYJ69416.1|2979750_2980296_-	hypothetical protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	50.8	7.4e-48
AYJ69417.1|2980288_2980693_-|head,tail	head-tail adaptor	head,tail	A0A2H4J1A4	uncultured_Caudovirales_phage	69.2	4.1e-43
AYJ69418.1|2980692_2981202_-	hypothetical protein	NA	A0A2H4J488	uncultured_Caudovirales_phage	40.7	8.5e-22
AYJ69419.1|2981198_2981609_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	57.4	2.5e-32
AYJ69420.1|2981577_2981946_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69421.1|2981995_2982943_-	DUF2184 domain-containing protein	NA	A0A2H4J191	uncultured_Caudovirales_phage	55.9	1.2e-98
AYJ69422.1|2982954_2983458_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	46.4	3.4e-31
AYJ69423.1|2983469_2984747_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	42.8	1.6e-77
AYJ69424.1|2984798_2985332_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	56.9	5.5e-48
AYJ69425.1|2985402_2986872_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	55.7	1.1e-157
AYJ69426.1|2986911_2988330_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.0	6.8e-186
AYJ69427.1|2988295_2989048_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	55.2	2.6e-11
AYJ71346.1|2989111_2989300_-	DUF826 domain-containing protein	NA	NA	NA	NA	NA
AYJ69428.1|2989612_2990080_-|lysis	lysis protein	lysis	S4TNN7	Salmonella_phage	80.6	2.5e-60
AYJ69429.1|2990076_2990988_-	site-specific DNA-methyltransferase	NA	A0A088FRS2	Escherichia_phage	53.0	3.2e-88
AYJ69430.1|2990984_2991473_-	lysozyme	NA	M9P0E5	Enterobacteria_phage	68.1	4.6e-57
AYJ71347.1|2991450_2991753_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYJ69431.1|2991955_2992144_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69432.1|2992536_2993115_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
AYJ69433.1|2993111_2993405_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
AYJ69434.1|2993401_2993998_-	DUF1367 family protein	NA	H9C173	Pectobacterium_phage	73.7	1.5e-81
AYJ69435.1|2994066_2994258_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69436.1|2994441_2994780_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
AYJ69437.1|2994779_2994950_-	methyltransferase	NA	I6S1S6	Salmonella_phage	87.5	6.3e-06
AYJ69438.1|2994946_2995549_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.7e-98
AYJ69439.1|2995541_2995790_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69440.1|2995793_2996474_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69441.1|2996511_2997900_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	47.1	1.2e-105
AYJ69442.1|2997896_2998877_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	80.6	2.3e-44
AYJ69443.1|2998879_2999104_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
AYJ69444.1|2999126_2999573_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	5.5e-25
AYJ71348.1|2999507_2999723_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69445.1|2999637_2999871_-	XRE family transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	48.6	6.2e-12
AYJ69446.1|2999969_3000434_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	51.7	2.7e-35
AYJ69447.1|3001118_3001442_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69448.1|3001449_3001695_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
AYJ69449.1|3001724_3003998_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	35.0	9.4e-105
AYJ69450.1|3003994_3004549_+	siphovirus Gp157 family protein	NA	H9C156	Pectobacterium_phage	59.3	1.3e-47
AYJ69451.1|3004551_3004734_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69452.1|3004783_3004981_+	hypothetical protein	NA	H9C154	Pectobacterium_phage	58.5	8.3e-10
AYJ69453.1|3004946_3005171_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AYJ69454.1|3005171_3006191_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	53.5	1.2e-91
AYJ69455.1|3006778_3007438_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
3008360:3008373	attR	CACGCTGCAAACGC	NA	NA	NA	NA
>prophage 8
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	3240976	3282934	4985863	coat,holin,lysis,portal,integrase,tail,terminase	Salmonella_phage(68.85%)	69	3240527:3240548	3283000:3283021
3240527:3240548	attL	CGTTCAACTTAGTATAAAAAAG	NA	NA	NA	NA
AYJ69655.1|3240976_3241339_+	GtrA family protein	NA	I1TED9	Salmonella_phage	82.5	6.2e-51
AYJ69656.1|3241335_3242253_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	92.7	2.9e-161
AYJ69657.1|3242249_3243701_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69658.1|3243736_3245497_-	hypothetical protein	NA	I6S5Y0	Salmonella_phage	88.3	3.0e-58
AYJ69659.1|3245596_3246475_-	phage repressor protein/antirepressor Ant	NA	I6R977	Salmonella_phage	78.9	1.1e-96
AYJ69660.1|3246537_3246711_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
AYJ69661.1|3246799_3247036_+	Arc family DNA-binding protein	NA	G0ZNE9	Cronobacter_phage	59.2	2.2e-17
AYJ69662.1|3247032_3247242_+	hypothetical protein	NA	I6R975	Salmonella_phage	98.6	5.9e-30
AYJ69663.1|3247216_3247402_-	hypothetical protein	NA	I6RSG3	Salmonella_phage	100.0	1.1e-08
AYJ69664.1|3247427_3247652_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69665.1|3247665_3248031_-	hypothetical protein	NA	A0A192Y6W5	Salmonella_phage	100.0	2.1e-67
AYJ69666.1|3248061_3248250_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69667.1|3248267_3250133_-	DNA transfer protein	NA	A0A2H4FNB8	Salmonella_phage	98.4	0.0e+00
AYJ69668.1|3250132_3251530_-	DNA transfer protein	NA	A0A2H4FND5	Salmonella_phage	85.8	6.9e-215
AYJ69669.1|3251540_3252233_-	DNA transfer protein	NA	A0A0M4RTU3	Salmonella_phage	96.1	3.7e-105
AYJ69670.1|3252235_3252691_-	DUF2824 family protein	NA	E7C9U3	Salmonella_phage	99.3	6.7e-87
AYJ69671.1|3252690_3253329_-|tail	phage tail protein	tail	A0A088CPT1	Enterobacteria_phage	99.1	7.0e-90
AYJ69672.1|3253332_3254751_-	hypothetical protein	NA	I1TEJ1	Salmonella_phage	98.9	1.5e-273
AYJ69673.1|3254710_3255211_-	hypothetical protein	NA	I1TEJ0	Salmonella_phage	98.2	1.2e-89
AYJ69674.1|3255194_3255755_-	hypothetical protein	NA	I6S1J7	Salmonella_phage	98.4	7.0e-102
AYJ69675.1|3255795_3257088_-|coat	coat protein	coat	Q76H21	Enterobacteria_phage	99.3	1.8e-241
AYJ69676.1|3257087_3257999_-	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	99.7	1.1e-160
AYJ69677.1|3258012_3260190_-|portal	portal protein	portal	I6R968	Salmonella_phage	98.2	0.0e+00
AYJ69678.1|3260189_3261689_-|terminase	terminase	terminase	A0A0M4S5Z3	Salmonella_phage	99.6	3.1e-306
AYJ69679.1|3261666_3262155_-	DNA-packaging protein	NA	A8CGG1	Salmonella_phage	100.0	2.9e-88
AYJ69680.1|3262158_3262563_-	Decoration protein	NA	C6ZR73	Salmonella_phage	99.3	1.5e-66
AYJ69681.1|3262565_3262808_-	DUF2560 family protein	NA	A0A1R3Y5V5	Salmonella_virus	100.0	1.7e-36
AYJ69682.1|3262911_3263292_-	hypothetical protein	NA	Q716B1	Shigella_phage	99.2	1.4e-66
AYJ69683.1|3263575_3264094_-	Rha family transcriptional regulator	NA	A0A2D1GLJ3	Escherichia_phage	100.0	3.2e-93
AYJ69684.1|3264299_3264737_-|lysis	lysis protein	lysis	K7P710	Enterobacteria_phage	95.9	4.2e-70
AYJ69685.1|3264733_3265210_-	lysozyme	NA	K7PKV2	Enterobacteria_phage	100.0	1.7e-88
AYJ69686.1|3265193_3265517_-|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
AYJ69687.1|3265754_3265952_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69688.1|3266224_3266848_-	antitermination protein	NA	C6ZR62	Salmonella_phage	98.1	9.8e-113
AYJ69689.1|3266844_3267024_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	100.0	7.1e-24
AYJ69690.1|3267004_3267208_-	protein ninH	NA	I6RSQ6	Salmonella_phage	97.0	1.4e-31
AYJ69691.1|3267204_3267429_-	protein ninY	NA	I6R0N9	Salmonella_phage	98.6	1.8e-37
AYJ69692.1|3267425_3268082_-	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	45.4	3.4e-39
AYJ69693.1|3268078_3268474_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0M4REJ2	Salmonella_phage	97.7	2.2e-70
AYJ69694.1|3268470_3268767_-	hypothetical protein	NA	A0A0M3ULJ7	Salmonella_phage	97.8	7.5e-47
AYJ69695.1|3268729_3268906_-	NinF family protein	NA	A0A0M4S6T3	Salmonella_phage	96.6	1.8e-27
AYJ69696.1|3268902_3269079_-	NinE family protein	NA	I6RSI9	Salmonella_phage	100.0	2.3e-27
AYJ69697.1|3269045_3269219_-	protein ninD	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
AYJ69698.1|3269215_3269653_-	recombination protein NinB	NA	A0A192Y6T2	Salmonella_phage	98.6	9.4e-78
AYJ69699.1|3269667_3269874_-	hypothetical protein	NA	I1TEG6	Salmonella_phage	98.5	2.7e-35
AYJ69700.1|3269877_3270162_-	hypothetical protein	NA	A0A2H4FNE3	Salmonella_phage	57.8	4.9e-27
AYJ69701.1|3270161_3270356_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ69702.1|3270429_3270708_-	hypothetical protein	NA	Q5G8S7	Enterobacteria_phage	93.5	1.0e-45
AYJ69703.1|3270708_3272589_-	bifunctional DNA primase/helicase	NA	I6S1U6	Salmonella_phage	97.9	0.0e+00
AYJ69704.1|3272696_3273545_-	replication protein	NA	C6ZR51	Salmonella_phage	94.7	8.0e-150
AYJ69705.1|3273727_3274006_-	hypothetical protein	NA	A0A220NRS4	Escherichia_phage	93.5	2.2e-40
AYJ69706.1|3274113_3274329_-	XRE family transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
AYJ71356.1|3274447_3275110_+	LexA family transcriptional regulator	NA	A0A0M4QWY1	Salmonella_phage	99.1	1.8e-125
AYJ69707.1|3275477_3275810_+	hypothetical protein	NA	A0A1R3Y5R1	Salmonella_virus	95.5	1.0e-52
AYJ69708.1|3275818_3276289_+	hypothetical protein	NA	A0A1I9LJN4	Stx_converting_phage	98.7	3.1e-87
AYJ69709.1|3276448_3276703_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69710.1|3276788_3276923_+	hypothetical protein	NA	K7PHK2	Enterobacteria_phage	78.0	2.1e-09
AYJ69711.1|3276907_3277102_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ69712.1|3277189_3277378_+	hypothetical protein	NA	C6ZR38	Salmonella_phage	82.3	1.7e-23
AYJ69713.1|3277386_3278094_+	recombinase	NA	A0A2H4FN95	Salmonella_phage	89.4	5.0e-121
AYJ69714.1|3278093_3278378_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
AYJ69715.1|3278424_3278718_+	DUF2856 family protein	NA	A0A2H4FNA1	Salmonella_phage	96.9	1.4e-48
AYJ69716.1|3278728_3278899_+	DUF2737 family protein	NA	A0A220NQV6	Salmonella_phage	98.2	1.3e-24
AYJ69717.1|3278895_3279306_+	hypothetical protein	NA	A0A1R3Y5S0	Salmonella_virus	94.1	4.4e-69
AYJ69718.1|3279302_3279935_+	ead/Ea22-like family protein	NA	A0A1R3Y5T1	Salmonella_virus	44.5	2.7e-25
AYJ69719.1|3279936_3280194_+	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	95.3	5.9e-40
AYJ69720.1|3281078_3281345_+	hypothetical protein	NA	A0A1V0E5L9	Salmonella_phage	96.6	6.3e-45
AYJ69721.1|3281667_3281886_+	excisionase	NA	A0A1V0E5M4	Salmonella_phage	100.0	5.7e-36
AYJ69722.1|3281863_3282934_+|integrase	integrase	integrase	A0A1V0E5M7	Salmonella_phage	100.0	1.0e-154
3283000:3283021	attR	CGTTCAACTTAGTATAAAAAAG	NA	NA	NA	NA
>prophage 9
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	4542748	4590395	4985863	tail,plate,tRNA	Burkholderia_phage(36.36%)	51	NA	NA
AYJ70830.1|4542748_4543747_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AYJ70831.1|4543834_4545145_-	conjugal transfer protein	NA	NA	NA	NA	NA
AYJ70832.1|4545391_4545907_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
AYJ70833.1|4546005_4546215_-	CsbD family protein	NA	NA	NA	NA	NA
AYJ71406.1|4546236_4546350_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ70834.1|4546346_4547672_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
AYJ70835.1|4547850_4548459_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
AYJ70836.1|4548567_4548936_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AYJ70837.1|4549106_4551527_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
AYJ70838.1|4551625_4552498_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AYJ70839.1|4552511_4553009_-	chorismate lyase	NA	NA	NA	NA	NA
AYJ70840.1|4553189_4554107_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AYJ70841.1|4554270_4555626_-	maltoporin	NA	NA	NA	NA	NA
AYJ70842.1|4555714_4556824_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
AYJ70843.1|4557185_4558376_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
AYJ70844.1|4558507_4560052_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
AYJ70845.1|4560066_4560957_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AYJ70846.1|4561122_4561533_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
AYJ70847.1|4561675_4563772_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AYJ70848.1|4563771_4564509_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ70849.1|4564505_4565144_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
AYJ70850.1|4565207_4565450_-	outer membrane protein	NA	NA	NA	NA	NA
AYJ70851.1|4565893_4567543_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYJ70852.1|4567931_4569281_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
AYJ70853.1|4569415_4569763_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	52.6	7.5e-22
AYJ70854.1|4570339_4570627_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	5.1e-16
AYJ70855.1|4570629_4571235_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	58.8	1.0e-58
AYJ70856.1|4571247_4571562_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AYJ70857.1|4571721_4572177_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ70858.1|4572173_4572371_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	5.1e-07
AYJ70859.1|4572360_4573788_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.2	1.8e-194
AYJ70860.1|4573787_4574312_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.0	1.8e-67
AYJ70861.1|4574363_4574681_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AYJ70862.1|4574640_4574769_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AYJ70863.1|4574865_4577220_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.5	3.4e-65
AYJ70864.1|4577219_4578173_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	51.5	7.9e-37
AYJ70865.1|4578172_4578382_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AYJ70866.1|4578369_4579413_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.6	1.5e-76
AYJ70867.1|4579422_4580145_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
AYJ70868.1|4580153_4580396_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ70869.1|4580471_4580834_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
AYJ70870.1|4580830_4581760_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
AYJ70871.1|4581759_4583307_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	30.4	5.0e-49
AYJ70872.1|4583470_4583830_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AYJ70873.1|4583820_4584936_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.7	3.1e-101
AYJ70874.1|4584928_4585561_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
AYJ70875.1|4585563_4587222_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	8.0e-53
AYJ70876.1|4587228_4587843_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
AYJ70877.1|4587839_4588295_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ71407.1|4588671_4589088_+	serine acetyltransferase	NA	NA	NA	NA	NA
AYJ70878.1|4589666_4590395_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
>prophage 10
CP032814	Salmonella enterica subsp. enterica strain 10TTU468x chromosome, complete genome	4985863	4659980	4755774	4985863	capsid,holin,lysis,tRNA,plate,portal,head,tail,integrase,terminase	Escherichia_phage(38.3%)	100	4720090:4720136	4750828:4750874
AYJ70929.1|4659980_4661081_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
AYJ70930.1|4661127_4661487_-	YijD family membrane protein	NA	NA	NA	NA	NA
AYJ70931.1|4661502_4662138_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
AYJ70932.1|4662139_4662328_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ70933.1|4662336_4663737_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
AYJ70934.1|4663719_4664637_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
AYJ70935.1|4664920_4666297_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AYJ70936.1|4666414_4667191_-	acetylglutamate kinase	NA	NA	NA	NA	NA
AYJ70937.1|4667198_4668203_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AYJ70938.1|4668291_4669443_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
AYJ70939.1|4669834_4672486_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AYJ70940.1|4672696_4674430_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
AYJ70941.1|4674590_4675427_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYJ70942.1|4675681_4676344_+	fructose-6-phosphate aldolase	NA	A0A0E3F0E2	Synechococcus_phage	34.1	2.5e-29
AYJ70943.1|4676355_4677459_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
AYJ70944.1|4677717_4678341_+	DUF1287 domain-containing protein	NA	NA	NA	NA	NA
AYJ70945.1|4678398_4680579_-	catalase/peroxidase HPI	NA	NA	NA	NA	NA
AYJ70946.1|4680743_4681634_-	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
AYJ70947.1|4681828_4683385_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AYJ70948.1|4683520_4684645_+	cytoplasmic protein	NA	NA	NA	NA	NA
AYJ70949.1|4684879_4685878_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ70950.1|4685880_4686738_+	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA	NA
AYJ70951.1|4686863_4689296_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
AYJ70952.1|4689298_4690459_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
AYJ70953.1|4690723_4691041_+	met repressor	NA	NA	NA	NA	NA
AYJ70954.1|4691497_4693288_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AYJ71409.1|4693580_4693766_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ70955.1|4694283_4694496_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
AYJ70956.1|4694699_4696898_+	primosomal protein N'	NA	NA	NA	NA	NA
AYJ70957.1|4697052_4698078_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
AYJ70958.1|4698171_4699146_+	cell division protein FtsN	NA	NA	NA	NA	NA
AYJ70959.1|4699237_4699768_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AYJ70960.1|4699777_4701109_+	HslU--HslV peptidase ATPase subunit	NA	W6AS21	Erwinia_phage	28.3	2.4e-44
AYJ70961.1|4701175_4702105_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AYJ70962.1|4702197_4702683_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
AYJ70963.1|4702904_4703144_-	cell division protein ZapB	NA	NA	NA	NA	NA
AYJ70964.1|4703542_4704388_+	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	28.6	2.0e-15
AYJ70965.1|4704408_4705917_+	glycerol kinase	NA	NA	NA	NA	NA
AYJ70966.1|4706028_4707039_+	class II fructose-bisphosphatase	NA	NA	NA	NA	NA
AYJ70967.1|4707135_4707882_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AYJ70968.1|4707991_4708420_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
AYJ70969.1|4708520_4709117_+	DUF1454 family protein	NA	NA	NA	NA	NA
AYJ70970.1|4709229_4709997_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AYJ70971.1|4710106_4711411_-	citrate transporter	NA	NA	NA	NA	NA
AYJ71410.1|4711508_4712231_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ70972.1|4712293_4713334_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA	NA
AYJ70973.1|4713343_4714303_-	aminoimidazole riboside kinase	NA	NA	NA	NA	NA
AYJ70974.1|4714313_4715648_-	MFS transporter	NA	NA	NA	NA	NA
AYJ70975.1|4715912_4716668_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA	NA
AYJ70976.1|4716768_4717758_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYJ70977.1|4717961_4718924_-	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
AYJ70978.1|4719108_4720011_-	cation-efflux pump FieF	NA	NA	NA	NA	NA
4720090:4720136	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
AYJ70979.1|4720247_4720502_-	DNA-binding transcriptional regulator	NA	M1SNR2	Escherichia_phage	100.0	1.3e-44
AYJ70980.1|4720547_4721711_-	phage late control D family protein	NA	U5N3V4	Enterobacteria_phage	99.2	7.0e-205
AYJ70981.1|4721710_4722190_-|tail	phage tail protein	tail	O64315	Escherichia_phage	99.4	1.5e-84
AYJ70982.1|4722204_4724652_-|tail	phage tail tape measure protein	tail	M1T2S3	Escherichia_phage	94.8	0.0e+00
AYJ70983.1|4724644_4724764_-|tail	GpE family phage tail protein	tail	A0A0F7LCR6	Escherichia_phage	100.0	1.0e-15
AYJ70984.1|4724796_4725072_-|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	100.0	5.7e-41
AYJ70985.1|4725128_4725647_-|tail	phage major tail tube protein	tail	A0A0F7LDZ1	Escherichia_phage	100.0	1.4e-93
AYJ70986.1|4725659_4726850_-|tail	phage tail sheath protein	tail	A0A0F7LBW9	Escherichia_phage	99.5	4.8e-225
AYJ70987.1|4726909_4727503_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	97.0	1.8e-103
AYJ71411.1|4727722_4728211_+|tail	phage tail protein	tail	A0A1S6KZZ0	Salmonella_phage	82.6	2.1e-70
AYJ70988.1|4728180_4728798_+|tail	tail assembly chaperone	tail	A0A1S6KZY8	Salmonella_phage	83.6	5.3e-95
AYJ70989.1|4728802_4729336_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	80.3	5.7e-77
AYJ70990.1|4729338_4730901_-|tail	phage tail protein	tail	A0A1S6KZZ8	Salmonella_phage	49.4	1.5e-154
AYJ70991.1|4730957_4731509_-|tail	phage tail protein I	tail	A0A0F7LA36	Escherichia_phage	99.5	1.5e-104
AYJ70992.1|4731501_4732410_-|plate	baseplate assembly protein	plate	Q858V6	Yersinia_virus	100.0	8.8e-163
AYJ70993.1|4732414_4732762_-|plate	baseplate assembly protein	plate	A0A0F7L9X3	Escherichia_phage	100.0	1.7e-58
AYJ70994.1|4732758_4733394_-|plate	phage baseplate assembly protein V	plate	U5N3F0	Enterobacteria_phage	99.1	9.0e-114
AYJ70995.1|4733460_4733913_-	phage virion morphogenesis protein	NA	A0A0F7LBV9	Escherichia_phage	100.0	6.3e-77
AYJ70996.1|4733905_4734373_-|tail	phage tail protein	tail	A0A0F7LA33	Escherichia_phage	98.7	8.7e-82
AYJ70997.1|4734335_4734509_-|lysis	phage lysis protein	lysis	Q7Y4E1	Escherichia_virus	96.5	2.3e-24
AYJ70998.1|4734480_4734906_-|lysis	LysB family phage lysis regulatory protein	lysis	U5N3W5	Enterobacteria_phage	96.5	4.7e-66
AYJ70999.1|4734893_4735319_-	protein lysA	NA	U5N096	Enterobacteria_phage	95.7	2.8e-58
AYJ71000.1|4735333_4735831_-	lysozyme	NA	A0A0F7LBS0	Escherichia_phage	100.0	3.1e-93
AYJ71001.1|4735830_4736112_-|holin	holin	holin	A0A0F7LDF8	Escherichia_phage	100.0	3.7e-43
AYJ71002.1|4736115_4736319_-|tail	phage tail protein	tail	U5N3E7	Enterobacteria_phage	100.0	4.0e-31
AYJ71003.1|4736318_4736828_-|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	100.0	1.1e-90
AYJ71004.1|4736927_4737671_-|terminase	terminase	terminase	Q94MH3	Enterobacteria_phage	98.0	3.1e-121
AYJ71005.1|4737674_4738748_-|capsid	phage major capsid protein, P2 family	capsid	Q778Y7	Enterobacteria_phage	100.0	6.7e-202
AYJ71006.1|4738806_4739661_-|capsid	capsid scaffolding protein	capsid	Q94MF5	Enterobacteria_phage	99.6	2.2e-139
AYJ71007.1|4739834_4741607_+	oxidoreductase	NA	A0A0F7LCM8	Escherichia_phage	99.8	0.0e+00
AYJ71008.1|4741606_4742641_+|portal	phage portal protein	portal	Q858W8	Yersinia_virus	99.4	4.2e-201
AYJ71009.1|4742981_4744814_-	hypothetical protein	NA	Q2P9X5	Enterobacteria_phage	32.5	4.1e-90
AYJ71010.1|4744930_4747213_-	replication endonuclease	NA	A0A0F7LBQ2	Escherichia_phage	98.4	0.0e+00
AYJ71011.1|4747202_4747478_-	hypothetical protein	NA	U5N3W1	Enterobacteria_phage	97.8	1.6e-43
AYJ71012.1|4747474_4747699_-	TraR/DksA family transcriptional regulator	NA	A0A0F7LDG9	Escherichia_phage	97.3	8.5e-35
AYJ71013.1|4747698_4748001_-	hypothetical protein	NA	U5N0U2	Enterobacteria_phage	97.0	2.5e-45
AYJ71014.1|4748000_4748225_-	DUF2732 family protein	NA	S4TP68	Salmonella_phage	98.6	2.3e-32
AYJ71015.1|4748288_4748789_-	replication protein B	NA	A0A0F7LBQ6	Escherichia_phage	100.0	4.5e-92
AYJ71016.1|4748958_4749231_-	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	100.0	1.4e-47
AYJ71017.1|4749367_4749661_+	helix-turn-helix domain-containing protein	NA	Q1JS37	Enterobacteria_phage	100.0	2.7e-49
AYJ71018.1|4749730_4750711_+|integrase	integrase	integrase	S4TP66	Salmonella_phage	100.0	4.7e-186
AYJ71019.1|4750896_4751397_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA	NA
4750828:4750874	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
AYJ71020.1|4751547_4752246_+	DNA-binding transcriptional regulator CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	4.0e-06
AYJ71021.1|4752242_4753616_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
AYJ71022.1|4753663_4753867_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ71023.1|4753987_4754383_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AYJ71024.1|4754394_4755147_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
AYJ71025.1|4755153_4755774_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
