assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	1	117814-117911	1	CRISPRCasFinder	no	cas3	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Unclear	CTCATTCAAGCGAAGCGCGCCGAC	24	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA|97aa|up_5|CP032762.1_113385_113676_-,NA|178aa|up_0|CP032762.1_117184_117718_-,NA|196aa|down_1|CP032762.1_121226_121814_-,NA|96aa|down_6|CP032762.1_126022_126310_-	NA|323aa|up_9|CP032762.1_109822_110791_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|341aa|up_8|CP032762.1_110933_111956_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|256aa|up_7|CP032762.1_111957_112725_+	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]	NA|150aa|up_6|CP032762.1_112922_113372_+	PRK06242, PRK06242, flavodoxin; Provisional	NA|97aa|up_5|CP032762.1_113385_113676_-	NA	NA|234aa|up_4|CP032762.1_113888_114590_-	PRK08264, PRK08264, SDR family oxidoreductase	NA|170aa|up_3|CP032762.1_114677_115187_+	pfam11706, zf-CGNR, CGNR zinc finger	NA|396aa|up_2|CP032762.1_115362_116550_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|180aa|up_1|CP032762.1_116595_117135_-	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|178aa|up_0|CP032762.1_117184_117718_-	NA	NA|1006aa|down_0|CP032762.1_118066_121084_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|196aa|down_1|CP032762.1_121226_121814_-	NA	NA|68aa|down_2|CP032762.1_121970_122174_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|788aa|down_3|CP032762.1_122622_124986_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|162aa|down_4|CP032762.1_125158_125644_+	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|114aa|down_5|CP032762.1_125684_126026_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|96aa|down_6|CP032762.1_126022_126310_-	NA	NA|67aa|down_7|CP032762.1_126330_126531_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|193aa|down_8|CP032762.1_126588_127167_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|266aa|down_9|CP032762.1_127157_127955_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	2	250352-250448	2	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	ATCGCTTGAATGGTCCATTCATA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA,NA|108aa|down_7|CP032762.1_255147_255471_+	NA|768aa|up_9|CP032762.1_241087_243391_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|211aa|up_8|CP032762.1_243403_244036_-	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|152aa|up_7|CP032762.1_244129_244585_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|300aa|up_6|CP032762.1_244917_245817_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|230aa|up_5|CP032762.1_245797_246487_-	pfam04264, YceI, YceI-like domain	NA|337aa|up_4|CP032762.1_246730_247741_+	PRK07945, PRK07945, PHP domain-containing protein	NA|303aa|up_3|CP032762.1_247737_248646_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|154aa|up_2|CP032762.1_248665_249127_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|163aa|up_1|CP032762.1_249152_249641_-	pfam16571, FBP_C, FBP C-terminal treble-clef zinc-finger	NA|191aa|up_0|CP032762.1_249664_250237_-	pfam13305, WHG, WHG domain	NA|239aa|down_0|CP032762.1_250481_251198_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|217aa|down_1|CP032762.1_251212_251863_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|66aa|down_2|CP032762.1_252027_252225_-	pfam05532, CsbD, CsbD-like	NA|151aa|down_3|CP032762.1_252318_252771_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|188aa|down_4|CP032762.1_252773_253337_-	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein	NA|323aa|down_5|CP032762.1_253391_254360_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|183aa|down_6|CP032762.1_254332_254881_-	pfam06475, Glycolipid_bind, Putative glycolipid-binding	NA|108aa|down_7|CP032762.1_255147_255471_+	NA	NA|613aa|down_8|CP032762.1_255571_257410_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|597aa|down_9|CP032762.1_257402_259193_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	3	494853-494932	3	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	GGACGTAACTACGCGCGCACGAGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA|207aa|up_8|CP032762.1_487895_488516_-,NA	NA|347aa|up_9|CP032762.1_486717_487758_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|207aa|up_8|CP032762.1_487895_488516_-	NA	NA|68aa|up_7|CP032762.1_488613_488817_-	pfam11272, DUF3072, Protein of unknown function (DUF3072)	NA|116aa|up_6|CP032762.1_488940_489288_+	pfam05901, Excalibur, Excalibur calcium-binding domain	NA|280aa|up_5|CP032762.1_489433_490273_+	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|198aa|up_4|CP032762.1_490314_490908_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|385aa|up_3|CP032762.1_490979_492134_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|204aa|up_2|CP032762.1_492214_492826_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]	NA|133aa|up_1|CP032762.1_493167_493566_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|345aa|up_0|CP032762.1_493784_494819_+	cd19150, AKR_AKR14A1, Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ/AKR14A1) and similar proteins	NA|324aa|down_0|CP032762.1_494956_495928_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|401aa|down_1|CP032762.1_495968_497171_-	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|194aa|down_2|CP032762.1_497338_497920_+	pfam10759, DUF2587, Protein of unknown function (DUF2587)	NA|292aa|down_3|CP032762.1_497952_498828_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|280aa|down_4|CP032762.1_498839_499679_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|300aa|down_5|CP032762.1_499671_500571_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|285aa|down_6|CP032762.1_500622_501477_+	pfam05711, TylF, Macrocin-O-methyltransferase (TylF)	NA|631aa|down_7|CP032762.1_501547_503440_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|263aa|down_8|CP032762.1_503539_504328_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|719aa|down_9|CP032762.1_504476_506633_+	pfam09586, YfhO, Bacterial membrane protein YfhO
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	5	597833-597930	5	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	GTGACATTCAAGCGATGGGCGGTC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA|176aa|up_4|CP032762.1_593086_593614_+,NA|343aa|up_1|CP032762.1_595838_596867_+,NA|217aa|down_0|CP032762.1_599679_600330_+,NA|173aa|down_1|CP032762.1_600344_600863_+	NA|332aa|up_9|CP032762.1_588220_589216_-	pfam14219, DUF4328, Domain of unknown function (DUF4328)	NA|110aa|up_8|CP032762.1_589302_589632_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|311aa|up_7|CP032762.1_589811_590744_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|380aa|up_6|CP032762.1_590753_591893_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|208aa|up_5|CP032762.1_592133_592757_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|176aa|up_4|CP032762.1_593086_593614_+	NA	NA|237aa|up_3|CP032762.1_593833_594544_+	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|411aa|up_2|CP032762.1_594609_595842_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|343aa|up_1|CP032762.1_595838_596867_+	NA	NA|256aa|up_0|CP032762.1_596999_597767_+	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|217aa|down_0|CP032762.1_599679_600330_+	NA	NA|173aa|down_1|CP032762.1_600344_600863_+	NA	NA|222aa|down_2|CP032762.1_600912_601578_+	pfam07987, DUF1775, Domain of unkown function (DUF1775)	NA|171aa|down_3|CP032762.1_601574_602087_+	pfam04234, CopC, CopC domain	NA|307aa|down_4|CP032762.1_602093_603014_+	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|325aa|down_5|CP032762.1_603165_604140_+	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|546aa|down_6|CP032762.1_604183_605821_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|349aa|down_7|CP032762.1_605820_606867_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|158aa|down_8|CP032762.1_607000_607474_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|660aa|down_9|CP032762.1_607479_609459_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	6	720436-720537	6	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	ATCGCTTGAATGGTCCATTCATATGATC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA,NA	NA|135aa|up_9|CP032762.1_706016_706421_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|418aa|up_8|CP032762.1_706417_707671_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|301aa|up_7|CP032762.1_707753_708656_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|199aa|up_6|CP032762.1_708661_709258_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|485aa|up_5|CP032762.1_709431_710886_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|99aa|up_4|CP032762.1_710868_711165_-	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|520aa|up_3|CP032762.1_711224_712784_+	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|304aa|up_2|CP032762.1_712780_713692_-	pfam01083, Cutinase, Cutinase	NA|484aa|up_1|CP032762.1_714009_715461_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1529aa|up_0|CP032762.1_715453_720040_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|500aa|down_0|CP032762.1_721081_722581_+	pfam12401, DUF3662, Protein of unknown function (DUF2662)	NA|155aa|down_1|CP032762.1_722750_723215_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|487aa|down_2|CP032762.1_723211_724672_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|486aa|down_3|CP032762.1_724671_726129_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|496aa|down_4|CP032762.1_726125_727613_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|495aa|down_5|CP032762.1_727620_729105_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|643aa|down_6|CP032762.1_729101_731030_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|207aa|down_7|CP032762.1_731047_731668_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|314aa|down_8|CP032762.1_732063_733005_+	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|162aa|down_9|CP032762.1_733016_733502_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	7	1087602-1087704	7	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	CGTATGAAAGGACCATTCAAGCGATGGGG	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA|219aa|up_1|CP032762.1_1084573_1085230_+,NA|190aa|down_2|CP032762.1_1090981_1091551_-	NA|418aa|up_9|CP032762.1_1074366_1075620_+	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family	NA|285aa|up_8|CP032762.1_1075624_1076479_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|355aa|up_7|CP032762.1_1076475_1077540_+	TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family	NA|338aa|up_6|CP032762.1_1077536_1078550_-	cd07302, CHD, cyclase homology domain	NA|481aa|up_5|CP032762.1_1078542_1079985_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|775aa|up_4|CP032762.1_1079984_1082309_-	PRK03355, PRK03355, glycerol-3-phosphate 1-O-acyltransferase	NA|380aa|up_3|CP032762.1_1082485_1083625_-	cd01844, SGNH_hydrolase_like_6, SGNH_hydrolase subfamily	NA|247aa|up_2|CP032762.1_1083765_1084506_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|219aa|up_1|CP032762.1_1084573_1085230_+	NA	NA|697aa|up_0|CP032762.1_1085454_1087545_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|569aa|down_0|CP032762.1_1087713_1089420_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|479aa|down_1|CP032762.1_1089536_1090973_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|190aa|down_2|CP032762.1_1090981_1091551_-	NA	NA|351aa|down_3|CP032762.1_1091705_1092758_+	PRK08224, ligC, ATP-dependent DNA ligase; Reviewed	NA|361aa|down_4|CP032762.1_1092758_1093841_+	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2	NA|620aa|down_5|CP032762.1_1093913_1095773_-	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1	NA|347aa|down_6|CP032762.1_1096036_1097077_+	pfam15887, Peptidase_Mx, Putative zinc-binding metallo-peptidase	NA|248aa|down_7|CP032762.1_1097130_1097874_+	pfam03861, ANTAR, ANTAR domain	NA|425aa|down_8|CP032762.1_1097870_1099145_-	pfam00563, EAL, EAL domain	NA|211aa|down_9|CP032762.1_1099141_1099774_-	pfam05401, NodS, Nodulation protein S (NodS)
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	9	1498157-1498241	9	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	TTACGTCGGGCGGTAACTACGCACTCAC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA|155aa|up_9|CP032762.1_1490875_1491340_+,NA|268aa|up_7|CP032762.1_1491724_1492528_-,NA|114aa|up_6|CP032762.1_1492826_1493168_-,NA|460aa|up_5|CP032762.1_1493270_1494650_+,NA|106aa|up_3|CP032762.1_1495994_1496312_-,NA|80aa|up_1|CP032762.1_1497487_1497727_+,NA|132aa|up_0|CP032762.1_1497752_1498148_+,NA|134aa|down_1|CP032762.1_1498461_1498863_-,NA|70aa|down_2|CP032762.1_1498921_1499131_-,NA|179aa|down_7|CP032762.1_1501277_1501814_+	NA|155aa|up_9|CP032762.1_1490875_1491340_+	NA	NA|129aa|up_8|CP032762.1_1491309_1491696_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|268aa|up_7|CP032762.1_1491724_1492528_-	NA	NA|114aa|up_6|CP032762.1_1492826_1493168_-	NA	NA|460aa|up_5|CP032762.1_1493270_1494650_+	NA	NA|429aa|up_4|CP032762.1_1494673_1495960_+	COG1520, COG1520, FOG: WD40-like repeat [Function unknown]	NA|106aa|up_3|CP032762.1_1495994_1496312_-	NA	NA|269aa|up_2|CP032762.1_1496485_1497292_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|80aa|up_1|CP032762.1_1497487_1497727_+	NA	NA|132aa|up_0|CP032762.1_1497752_1498148_+	NA	NA|67aa|down_0|CP032762.1_1498259_1498460_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|134aa|down_1|CP032762.1_1498461_1498863_-	NA	NA|70aa|down_2|CP032762.1_1498921_1499131_-	NA	NA|89aa|down_3|CP032762.1_1499144_1499411_-	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown]	NA|57aa|down_4|CP032762.1_1499501_1499672_-	pfam05532, CsbD, CsbD-like	NA|154aa|down_5|CP032762.1_1499937_1500399_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|128aa|down_6|CP032762.1_1500615_1500999_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|179aa|down_7|CP032762.1_1501277_1501814_+	NA	NA|160aa|down_8|CP032762.1_1501992_1502472_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|306aa|down_9|CP032762.1_1502540_1503458_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	10	2235061-2235163	10	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	CCGTCAGAACGCATAACGGGGGAGT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA|316aa|up_0|CP032762.1_2234005_2234953_-,NA|569aa|down_9|CP032762.1_2249032_2250739_+	NA|259aa|up_9|CP032762.1_2225845_2226622_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|228aa|up_8|CP032762.1_2226618_2227302_-	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|480aa|up_7|CP032762.1_2227226_2228666_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|253aa|up_6|CP032762.1_2228695_2229454_+	PRK08251, PRK08251, SDR family oxidoreductase	NA|82aa|up_5|CP032762.1_2229460_2229706_-	pfam10944, DUF2630, Protein of unknown function (DUF2630)	NA|403aa|up_4|CP032762.1_2229746_2230955_-	cd19542, CT_NRPS-like, Terminal Condensation (CT)-like domains of nonribosomal peptide synthetases (NRPSs)	NA|255aa|up_3|CP032762.1_2230951_2231716_-	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein	NA|200aa|up_2|CP032762.1_2231776_2232376_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|542aa|up_1|CP032762.1_2232372_2233998_+	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional	NA|316aa|up_0|CP032762.1_2234005_2234953_-	NA	NA|550aa|down_0|CP032762.1_2236305_2237955_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|484aa|down_1|CP032762.1_2238036_2239488_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|97aa|down_2|CP032762.1_2239555_2239846_-	PRK07857, PRK07857, chorismate mutase	NA|686aa|down_3|CP032762.1_2240080_2242138_-	pfam02687, FtsX, FtsX-like permease family	NA|266aa|down_4|CP032762.1_2242144_2242942_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|221aa|down_5|CP032762.1_2243026_2243689_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|364aa|down_6|CP032762.1_2243670_2244762_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|816aa|down_7|CP032762.1_2244941_2247389_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|355aa|down_8|CP032762.1_2247573_2248638_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|569aa|down_9|CP032762.1_2249032_2250739_+	NA
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	11	4261281-4261360	11	CRISPRCasFinder	no	csa3	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Type I-A	CCGGCGGTAACTACGCACGCACG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA,NA	NA|275aa|up_9|CP032762.1_4251988_4252813_-	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|305aa|up_8|CP032762.1_4252934_4253849_-	PRK00089, era, GTPase Era; Reviewed	NA|443aa|up_7|CP032762.1_4253912_4255241_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|181aa|up_6|CP032762.1_4255237_4255780_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|350aa|up_5|CP032762.1_4255835_4256885_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|249aa|up_4|CP032762.1_4256967_4257714_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|259aa|up_3|CP032762.1_4257710_4258487_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|385aa|up_2|CP032762.1_4258490_4259645_-	PRK14278, PRK14278, chaperone protein DnaJ; Provisional	NA|348aa|up_1|CP032762.1_4259757_4260801_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|108aa|up_0|CP032762.1_4260950_4261274_+	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription]	NA|403aa|down_0|CP032762.1_4261411_4262620_-	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|578aa|down_1|CP032762.1_4263008_4264742_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|237aa|down_2|CP032762.1_4264738_4265449_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|314aa|down_3|CP032762.1_4265445_4266387_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|434aa|down_4|CP032762.1_4266386_4267688_+	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]	NA|250aa|down_5|CP032762.1_4267684_4268434_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|224aa|down_6|CP032762.1_4268436_4269108_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|356aa|down_7|CP032762.1_4269374_4270442_-	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter	NA|267aa|down_8|CP032762.1_4270441_4271242_-	TIGR02140, Sulfate_transport_system_permease_protein_CysW, sulfate ABC transporter, permease protein CysW	NA|252aa|down_9|CP032762.1_4271238_4271994_-	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	12	5283330-5283439	12	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	GCGATCAGATCGTATGAATGGACCATTCAAGCGATG	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA|189aa|up_9|CP032762.1_5273403_5273970_+,NA|399aa|down_1|CP032762.1_5284868_5286065_-,NA|86aa|down_6|CP032762.1_5290772_5291030_-	NA|189aa|up_9|CP032762.1_5273403_5273970_+	NA	NA|407aa|up_8|CP032762.1_5273966_5275187_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|73aa|up_7|CP032762.1_5275198_5275417_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|432aa|up_6|CP032762.1_5275444_5276740_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|190aa|up_5|CP032762.1_5276888_5277458_-	pfam14030, DUF4245, Protein of unknown function (DUF4245)	NA|347aa|up_4|CP032762.1_5277581_5278622_+	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|468aa|up_3|CP032762.1_5278665_5280069_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|286aa|up_2|CP032762.1_5280244_5281102_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|132aa|up_1|CP032762.1_5281275_5281671_+	COG4308, LimA, Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_0|CP032762.1_5281720_5283004_-	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|428aa|down_0|CP032762.1_5283527_5284811_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|399aa|down_1|CP032762.1_5284868_5286065_-	NA	NA|308aa|down_2|CP032762.1_5286208_5287132_+	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|261aa|down_3|CP032762.1_5287188_5287971_-	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|222aa|down_4|CP032762.1_5288086_5288752_+	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|674aa|down_5|CP032762.1_5288748_5290770_-	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|86aa|down_6|CP032762.1_5290772_5291030_-	NA	NA|287aa|down_7|CP032762.1_5291026_5291887_-	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|142aa|down_8|CP032762.1_5292029_5292455_+	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|165aa|down_9|CP032762.1_5292725_5293220_+	PRK00226, greA, transcription elongation factor GreA; Reviewed
GCA_003641205.1_ASM364120v1	CP032762	Rhodococcus sp. P1Y chromosome, complete genome	14	5843554-5843667	14	CRISPRCasFinder	no		cas3,csa3,RT,WYL,cas4,DEDDh,DinG	Orphan	GCTTGAATGGACCCCGCACGCTATCTGACCGTATGAATGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,cas4,DEDDh,DinG	NA,NA	NA|470aa|up_9|CP032762.1_5833537_5834947_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|366aa|up_8|CP032762.1_5835039_5836137_+	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional	NA|243aa|up_7|CP032762.1_5836137_5836866_-	pfam12690, BsuPI, Intracellular proteinase inhibitor	NA|208aa|up_6|CP032762.1_5836943_5837567_-	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|301aa|up_5|CP032762.1_5837637_5838540_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|269aa|up_4|CP032762.1_5838640_5839447_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|246aa|up_3|CP032762.1_5839452_5840190_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|103aa|up_2|CP032762.1_5840226_5840535_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|531aa|up_1|CP032762.1_5840563_5842156_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|434aa|up_0|CP032762.1_5842223_5843525_+	pfam03583, LIP, Secretory lipase	NA|846aa|down_0|CP032762.1_5843772_5846310_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|506aa|down_1|CP032762.1_5846604_5848122_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|152aa|down_2|CP032762.1_5848161_5848617_-	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB	NA|171aa|down_3|CP032762.1_5848613_5849126_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|267aa|down_4|CP032762.1_5849312_5850113_-	PRK13318, PRK13318, type III pantothenate kinase	NA|144aa|down_5|CP032762.1_5850115_5850547_-	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|323aa|down_6|CP032762.1_5851527_5852496_-	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|458aa|down_7|CP032762.1_5852630_5854004_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|158aa|down_8|CP032762.1_5854102_5854576_-	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|173aa|down_9|CP032762.1_5854572_5855091_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
