The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028731	Mycobacterium avium strain HJW chromosome, complete genome	4961843	458870	465442	4961843		Bacillus_phage(33.33%)	8	NA	NA
AYJ03788.1|458870_459803_+	short chain dehydrogenase	NA	W8CYX9	Bacillus_phage	35.9	4.6e-05
AYJ03789.1|459737_460781_-	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	27.6	1.8e-18
AYJ03790.1|460780_461395_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ03791.1|461488_462043_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	5.4e-06
AYJ03792.1|462230_462497_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03793.1|462572_462812_+	NrdH-redoxin	NA	V5UN81	Mycobacterium_phage	64.5	2.0e-21
AYJ03794.1|462854_463307_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.7	1.7e-13
AYJ03795.1|463276_465442_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	7.4e-208
>prophage 2
CP028731	Mycobacterium avium strain HJW chromosome, complete genome	4961843	677324	705243	4961843	integrase,tRNA,transposase	Corynebacterium_phage(40.0%)	24	678839:678898	705406:706884
AYJ03979.1|677324_678587_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AYJ03980.1|678607_678832_-	deoxyribodipyrimidine photolyase	NA	NA	NA	NA	NA
678839:678898	attL	TCCTTAGGGTTGAAGGGGTCTGGGATTGGATGTCCTGGATGCCCAGGACGGTGGGGTGTG	NA	NA	NA	NA
AYJ03981.1|679060_680266_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYJ03982.1|681116_683018_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03983.1|683113_683587_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ07493.1|684121_685342_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	40.3	1.8e-62
AYJ03984.1|685263_686370_+|integrase	integrase	integrase	A0A220NQQ9	Corynebacterium_phage	32.2	1.9e-10
AYJ07494.1|686420_688598_+|transposase	transposase	transposase	NA	NA	NA	NA
AYJ03985.1|688587_689019_+|transposase	transposase	transposase	NA	NA	NA	NA
AYJ03986.1|691049_692867_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ03987.1|692832_693774_+	UDP-glucose 4-epimerase	NA	A0A2K9L0I7	Tupanvirus	35.1	4.1e-38
AYJ03988.1|693770_694112_-	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
AYJ03989.1|694108_694810_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYJ03990.1|694845_696096_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ03991.1|696223_697312_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	41.3	2.4e-53
AYJ03992.1|697292_697781_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	45.1	7.3e-31
AYJ03993.1|697902_699288_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AYJ03994.1|699964_700747_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AYJ03995.1|700746_701325_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ03996.1|701341_701740_+	extradiol dioxygenase	NA	NA	NA	NA	NA
AYJ03997.1|702013_702325_+	PE family protein	NA	NA	NA	NA	NA
AYJ03998.1|702349_703540_+	PPE family protein	NA	NA	NA	NA	NA
AYJ03999.1|703640_703955_+	type VII secretion protein EsxD	NA	NA	NA	NA	NA
AYJ04000.1|704037_705243_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
705406:706884	attR	CACACCCCACCGTCCTGGGCATCCAGGACATCCAATCCCAGACCCCTTCAACCCTAAGGAAATTGATCATGTCCGACCCGATCACTTACAACCCGGGCGCGGTGGCCGACTTCGCCACCGACGTCGCCTCCCGCGCCGGCCAGTTGCAGTCCATTTTCGACGACACCTCCAACCGCACGCATGCCCTGCAGGAATTCTTCGCCGGGCACGGCGCGTCGGGCTTTTTCGAGGCGCAGGCGCAGATGCTGTCCGGGCTGCAGGGGCTCATCGACACGATCCGCCAGCACGGGCAGACCACCTCGCACGTGCTGGACAGCGCGATCAGCACGGACCAGCACATCGCCGGCCTGTTCTGAGCCGGCACGACCGGAACGAGGGTGGGGCAGATGCGCCGAGCGTGTGCCCCACCTTTCGTCTTTCTTCCCCGGTTGGGGATCCCGCGCGGTGAGGGCAGGGCGACATGCTGACCACGACGGTCGACGGCCTCTGGGTGTTGCAAGCGGTCACCGGGATCGAACAAACCTGCCCTGAGCTGGGGCTGCGGCCGCTGCTGCCGCGGCTGGACACCCCCGAGCGGGCGCTGCGGCACCCGGCGGCCGCCGAGCTGGTGGCCGCCGGCGCGCTCGACGAGGCCGGCAACGTCGACCCGATGATTCGCGAGTGGCTCACCGTGTTGTTGCGCCGGGACCTGGGCCTGCTGGTGATGATCGCCGTCCCGGGCCGCGAGCCGAGCCGGGCGTCGATCTGCCGCTTCGCCACCTGGTGGGTGGTGTTGGAACGCCACGATCAGCTGGTGCGCCTCTACCCCGCCGGGACGGCCAGCAGCGAGGCCGCCGCCAGCGAGATCGTGGTCGGCCAGATCGAGCGGTTGTGCGGCGTGGCCGAGGCGGCGCCGCTGCGGCCCATCACCCTGGACACCGAGCAGCTGCTGGCCTCGGTGCACGACACCGCCAGCCTGCGGGCGTTCCTGCTCGAGCAGCGCCTCGACGCCGACCAGCTGCAGACGGTGCTCACCGCCGCCGACTCGGCCCGCTCGGCGCACGCCAACATCGTCGCGCTGCAGGCCGGCGTCGGGCCCGACGAGCTGGCCCGCGTCGCCGTCGGCGATTCGTCGGTGTCCATCGTGGACACCCCCGGCGGCCGGGTCTGTATCGAAAGCGTGGTATCCGGGCAGCGCCGCTACCAGATCCTGTCGCCCGGCTCGCGCAGCGACATCGGCGGAGCGGTGCAACGGCTGATCCGACGGCTGCCCGCCGGCGACGAGTGGTACTCGTATCGGCGGGTGGTGTGACGGTGCGGCCCCGTTATCGCGTCAAACTAACTTGGTCAACCAAAGTCTTGGAATAGCAACGCCTGTCGTACTTGAAAGGTTTGTGATCGGGTAAACGCGGTATCGCAAAGCGTGTTAGCATCGCGTCGTGACGAGCCCTTGGAATGACCCGAATATGTCGGACGAAGGAGCGCTCAGACGGGGGGATC	NA	NA	NA	NA
>prophage 3
CP028731	Mycobacterium avium strain HJW chromosome, complete genome	4961843	962848	997753	4961843	protease,integrase,holin,transposase	uncultured_Mediterranean_phage(28.57%)	30	963241:963256	998240:998255
AYJ07517.1|962848_964042_+|protease	serine protease	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	25.0	2.6e-05
963241:963256	attL	GCTGGCCGCCGCGGTG	NA	NA	NA	NA
AYJ04221.1|964034_965000_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYJ04222.1|965000_965540_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AYJ04223.1|965760_966432_+	peptidase	NA	NA	NA	NA	NA
AYJ07518.1|966553_968506_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.4	5.8e-87
AYJ04224.1|968620_969163_+	DUF4232 domain-containing protein	NA	NA	NA	NA	NA
AYJ04225.1|969248_970874_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYJ04226.1|970875_971802_+	ABC transporter permease	NA	NA	NA	NA	NA
AYJ04227.1|971794_972670_+	ABC transporter permease	NA	NA	NA	NA	NA
AYJ07519.1|972666_974313_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.0	8.0e-13
AYJ04228.1|974302_975061_+	oxidoreductase	NA	NA	NA	NA	NA
AYJ04229.1|975526_976384_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AYJ07520.1|976896_977949_+	helicase	NA	NA	NA	NA	NA
AYJ04230.1|977945_979121_+	conjugal transfer protein	NA	NA	NA	NA	NA
AYJ04231.1|979117_979921_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ07521.1|979943_980531_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ04232.1|980549_980750_+	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
AYJ07523.1|980809_981076_+	pilus biosynthesis protein TadE	NA	NA	NA	NA	NA
AYJ07522.1|981032_981401_+	helicase	NA	NA	NA	NA	NA
AYJ04233.1|981397_982435_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ04234.1|982517_984848_-	DUF1998 domain-containing protein	NA	NA	NA	NA	NA
AYJ07524.1|985096_985300_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	56.2	2.0e-14
AYJ04235.1|985488_986079_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ04236.1|986283_989082_+	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	30.7	8.6e-100
AYJ04237.1|989078_990740_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	32.8	8.4e-18
AYJ04238.1|990838_992044_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AYJ04239.1|993229_994336_+|integrase	integrase	integrase	A0A220NQQ9	Corynebacterium_phage	32.2	1.9e-10
AYJ07525.1|994386_996564_+|transposase	transposase	transposase	NA	NA	NA	NA
AYJ04240.1|996553_996985_+|transposase	transposase	transposase	NA	NA	NA	NA
AYJ04241.1|997363_997753_-|transposase	transposase	transposase	NA	NA	NA	NA
998240:998255	attR	GCTGGCCGCCGCGGTG	NA	NA	NA	NA
>prophage 4
CP028731	Mycobacterium avium strain HJW chromosome, complete genome	4961843	2192248	2229771	4961843	capsid,protease,integrase,transposase	Mycobacterium_phage(50.0%)	40	2215746:2215774	2227104:2227132
AYJ05154.1|2192248_2193472_-|protease	zinc metalloprotease	protease	NA	NA	NA	NA
AYJ07611.1|2193491_2194715_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AYJ07612.1|2194835_2195090_+	DUF2631 domain-containing protein	NA	NA	NA	NA	NA
AYJ05155.1|2195949_2196453_-	protein disulfide oxidoreductase	NA	NA	NA	NA	NA
AYJ05156.1|2196504_2197599_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AYJ05157.1|2197633_2198569_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AYJ05158.1|2198601_2199159_-	ribosome-recycling factor	NA	NA	NA	NA	NA
AYJ05159.1|2199280_2200078_-	UMP kinase	NA	NA	NA	NA	NA
AYJ05160.1|2200409_2200649_+	CsbD family protein	NA	NA	NA	NA	NA
AYJ05161.1|2200817_2201513_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYJ07613.1|2201536_2202475_-	glycerol acyltransferase	NA	NA	NA	NA	NA
AYJ05162.1|2202570_2203143_-	DUF1942 domain-containing protein	NA	NA	NA	NA	NA
AYJ05163.1|2203373_2204579_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYJ05164.1|2205164_2206004_+	KR domain-containing protein	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	45.3	1.7e-59
AYJ05165.1|2206094_2206508_-	cation transport regulator ChaB	NA	NA	NA	NA	NA
AYJ05166.1|2206626_2207049_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ05167.1|2207049_2208468_-	amidase	NA	NA	NA	NA	NA
AYJ05168.1|2208530_2209358_-	elongation factor Ts	NA	NA	NA	NA	NA
AYJ05169.1|2209371_2210202_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
AYJ05170.1|2210476_2210980_+	M23 family peptidase	NA	NA	NA	NA	NA
AYJ05171.1|2211080_2211986_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	27.0	4.1e-19
AYJ05172.1|2213113_2214313_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AYJ05173.1|2214318_2214780_+	DUF4411 domain-containing protein	NA	NA	NA	NA	NA
2215746:2215774	attL	ACTGGTTCAATCCCAGTATCGCGCACCAG	NA	NA	NA	NA
AYJ05174.1|2215969_2216287_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ05175.1|2216290_2216656_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ05176.1|2216753_2217152_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ05177.1|2217267_2217453_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ05178.1|2217581_2218145_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05179.1|2218817_2219030_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05180.1|2219029_2219869_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
AYJ05181.1|2220090_2220336_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05182.1|2220574_2220913_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05183.1|2220909_2221179_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05184.1|2221175_2221460_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ07614.1|2221499_2222783_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
AYJ05185.1|2222956_2223301_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05186.1|2223511_2224924_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYJ05187.1|2225214_2225475_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	66.7	1.8e-15
AYJ05188.1|2225751_2226921_-|integrase	site-specific integrase	integrase	A0A1D8EV90	Mycobacterium_phage	39.2	1.7e-62
AYJ05189.1|2229339_2229771_-|transposase	transposase	transposase	NA	NA	NA	NA
2227104:2227132	attR	ACTGGTTCAATCCCAGTATCGCGCACCAG	NA	NA	NA	NA
>prophage 5
CP028731	Mycobacterium avium strain HJW chromosome, complete genome	4961843	2900828	2966679	4961843	integrase,transposase	Corynebacterium_phage(40.0%)	60	2890786:2890805	2971090:2971109
2890786:2890805	attL	CGCGGTCCAGGTGCACGGCG	NA	NA	NA	NA
AYJ07662.1|2900828_2902049_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	40.3	2.4e-62
AYJ05708.1|2901970_2903077_+|integrase	integrase	integrase	A0A220NQQ9	Corynebacterium_phage	32.2	1.9e-10
AYJ07663.1|2903127_2905305_+|transposase	transposase	transposase	NA	NA	NA	NA
AYJ05709.1|2905294_2905726_+|transposase	transposase	transposase	NA	NA	NA	NA
AYJ05710.1|2906728_2907760_+	hotdog fold thioesterase	NA	NA	NA	NA	NA
AYJ05711.1|2907859_2909068_+	amidohydrolase	NA	NA	NA	NA	NA
AYJ05712.1|2909129_2909501_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ05713.1|2909445_2909748_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05714.1|2909749_2911240_-	oxidoreductase	NA	NA	NA	NA	NA
AYJ05715.1|2911253_2911763_-	oxidoreductase	NA	NA	NA	NA	NA
AYJ05716.1|2912009_2913977_+	STAS domain-containing protein	NA	NA	NA	NA	NA
AYJ05717.1|2913973_2915215_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYJ05718.1|2915211_2916360_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYJ05719.1|2916573_2917533_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYJ05720.1|2917826_2919059_+	cytochrome P450	NA	NA	NA	NA	NA
AYJ05721.1|2919055_2920213_+	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.8	1.2e-34
AYJ05722.1|2920220_2922125_-	DUF3533 domain-containing protein	NA	NA	NA	NA	NA
AYJ05723.1|2922128_2922806_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05724.1|2922829_2923447_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ05725.1|2923522_2924347_-	KR domain-containing protein	NA	NA	NA	NA	NA
AYJ05726.1|2924404_2925625_-	cytochrome P450	NA	NA	NA	NA	NA
AYJ05727.1|2925806_2927303_+	acetyl-CoA carboxylase carboxyltransferase subunit	NA	NA	NA	NA	NA
AYJ05728.1|2927375_2928449_-	TIGR03857 family LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
AYJ05729.1|2928412_2928793_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AYJ05730.1|2928792_2929914_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYJ05731.1|2929928_2931551_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AYJ05732.1|2931667_2932681_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AYJ05733.1|2932677_2933307_+	cysteine hydrolase	NA	NA	NA	NA	NA
AYJ05734.1|2933303_2933936_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AYJ05735.1|2933944_2935597_+	acyl-CoA synthetase	NA	A0A2K9L3I8	Tupanvirus	20.7	7.3e-06
AYJ05736.1|2935638_2936481_+	KR domain-containing protein	NA	NA	NA	NA	NA
AYJ05737.1|2936609_2937812_+	cytochrome P450	NA	NA	NA	NA	NA
AYJ05738.1|2937834_2939049_+	CoA transferase	NA	NA	NA	NA	NA
AYJ05739.1|2939103_2940249_+	thiolase family protein	NA	NA	NA	NA	NA
AYJ05740.1|2940365_2941559_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYJ05741.1|2941559_2942606_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYJ05742.1|2942608_2943439_-	amidohydrolase	NA	NA	NA	NA	NA
AYJ05743.1|2943435_2945073_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AYJ05744.1|2945095_2946298_-	amidohydrolase	NA	NA	NA	NA	NA
AYJ05745.1|2946317_2947142_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AYJ05746.1|2947453_2947696_+	CsbD family protein	NA	NA	NA	NA	NA
AYJ05747.1|2947749_2948766_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AYJ05748.1|2948810_2949608_-	KR domain-containing protein	NA	NA	NA	NA	NA
AYJ05749.1|2949788_2950592_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ05750.1|2950611_2951502_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AYJ05751.1|2951733_2952939_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYJ05752.1|2952973_2953666_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05753.1|2953843_2954665_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AYJ05754.1|2954769_2955582_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AYJ05755.1|2955572_2956379_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AYJ05756.1|2956378_2957839_+	AMP-dependent synthetase	NA	NA	NA	NA	NA
AYJ05757.1|2957828_2959403_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AYJ05758.1|2959395_2960952_+	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	23.5	2.8e-15
AYJ05759.1|2960927_2961290_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05760.1|2961363_2961672_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ05761.1|2961672_2962329_-	glutamine amidotransferase	NA	NA	NA	NA	NA
AYJ05762.1|2962405_2963359_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYJ05763.1|2963355_2964042_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ05764.1|2964048_2965242_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYJ05765.1|2965473_2966679_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
2971090:2971109	attR	CGCGGTCCAGGTGCACGGCG	NA	NA	NA	NA
