assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003628775.1_ASM362877v1	CP020872	Dickeya fangzhongdai strain PA1 chromosome, complete genome	1	427319-429366	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	33,33,33	33	TypeI-E	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	NA,NA	NA|308aa|up_9|CP020872.1_415867_416791_-	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	NA|120aa|up_8|CP020872.1_416944_417304_-	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	cas3|922aa|up_7|CP020872.1_417952_420718_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|CP020872.1_421366_422902_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|222aa|up_5|CP020872.1_422894_423560_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|354aa|up_4|CP020872.1_423556_424618_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|245aa|up_3|CP020872.1_424625_425360_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|CP020872.1_425359_426007_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|308aa|up_1|CP020872.1_426020_426944_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP020872.1_426940_427234_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|559aa|down_0|CP020872.1_429423_431100_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|154aa|down_1|CP020872.1_431648_432110_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|192aa|down_2|CP020872.1_432109_432685_+	pfam13470, PIN_3, PIN domain	NA|151aa|down_3|CP020872.1_432908_433361_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|155aa|down_4|CP020872.1_433472_433937_-	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein	NA|713aa|down_5|CP020872.1_434035_436174_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|303aa|down_6|CP020872.1_436553_437462_+	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|514aa|down_7|CP020872.1_437532_439074_+	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|333aa|down_8|CP020872.1_439090_440089_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|down_9|CP020872.1_440116_440938_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCA_003628775.1_ASM362877v1	CP020872	Dickeya fangzhongdai strain PA1 chromosome, complete genome	2	701368-702312	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,15,15	15	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	NA,NA	NA|90aa|up_9|CP020872.1_690705_690975_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|707aa|up_8|CP020872.1_691225_693346_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_7|CP020872.1_693473_694358_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|627aa|up_6|CP020872.1_694538_696419_+	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|340aa|up_5|CP020872.1_696498_697518_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_4|CP020872.1_697634_698513_-	PRK15447, PRK15447, putative protease; Provisional	NA|333aa|up_3|CP020872.1_698533_699532_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_2|CP020872.1_699851_700376_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_1|CP020872.1_700369_700873_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_0|CP020872.1_700859_701162_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|260aa|down_0|CP020872.1_702495_703275_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|458aa|down_1|CP020872.1_703337_704711_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|down_2|CP020872.1_704883_706107_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|242aa|down_3|CP020872.1_706193_706919_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|561aa|down_4|CP020872.1_706989_708672_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|823aa|down_5|CP020872.1_708703_711172_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|328aa|down_6|CP020872.1_711265_712249_-	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|180aa|down_7|CP020872.1_712245_712785_-	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional	NA|148aa|down_8|CP020872.1_712903_713347_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|down_9|CP020872.1_713315_713729_-	pfam03603, DNA_III_psi, DNA polymerase III psi subunit
GCA_003628775.1_ASM362877v1	CP020872	Dickeya fangzhongdai strain PA1 chromosome, complete genome	6	4035504-4035951	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	Type I-F	GTTCACTGCCGTGTAGGCAGCTTAGAAA,GTTCACTGCCGTGTAGGCAGCTTAGAAA,GTTCACTGCCGTGTAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,7,7	7	TypeI-F	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	NA,NA|89aa|down_8|CP020872.1_4045448_4045715_+	NA|153aa|up_9|CP020872.1_4025518_4025977_-	pfam08808, RES, RES domain	NA|151aa|up_8|CP020872.1_4025976_4026429_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|339aa|up_7|CP020872.1_4026574_4027591_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|92aa|up_6|CP020872.1_4027766_4028042_+	PRK09459, pspG, envelope stress response protein PspG	NA|469aa|up_5|CP020872.1_4028455_4029862_-	pfam00067, p450, Cytochrome P450	NA|334aa|up_4|CP020872.1_4030231_4031233_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|468aa|up_3|CP020872.1_4031354_4032758_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|359aa|up_2|CP020872.1_4032828_4033905_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|83aa|up_1|CP020872.1_4034038_4034287_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_0|CP020872.1_4034530_4035298_-	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|458aa|down_0|CP020872.1_4035988_4037362_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|down_1|CP020872.1_4037744_4038221_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|down_2|CP020872.1_4038472_4039087_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|down_3|CP020872.1_4039128_4040322_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|down_4|CP020872.1_4041483_4042038_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|down_5|CP020872.1_4042044_4043052_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|313aa|down_6|CP020872.1_4043068_4044007_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|down_7|CP020872.1_4044003_4045341_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|89aa|down_8|CP020872.1_4045448_4045715_+	NA	cas3f|1093aa|down_9|CP020872.1_4046104_4049383_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST
GCA_003628775.1_ASM362877v1	CP020872	Dickeya fangzhongdai strain PA1 chromosome, complete genome	7	4040786-4041354	7,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	Type I-F	TTTCTAAGCTGCCTACACGGCAGTGAAC,TTTCTAAGCTGCCTACACGGCAGTGAAC,GTTCACTGCCGTGTAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	9,9,7	9	TypeI-F	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	NA,NA|89aa|down_4|CP020872.1_4045448_4045715_+	NA|469aa|up_9|CP020872.1_4028455_4029862_-	pfam00067, p450, Cytochrome P450	NA|334aa|up_8|CP020872.1_4030231_4031233_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|468aa|up_7|CP020872.1_4031354_4032758_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|359aa|up_6|CP020872.1_4032828_4033905_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|83aa|up_5|CP020872.1_4034038_4034287_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_4|CP020872.1_4034530_4035298_-	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|458aa|up_3|CP020872.1_4035988_4037362_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|up_2|CP020872.1_4037744_4038221_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_1|CP020872.1_4038472_4039087_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_0|CP020872.1_4039128_4040322_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|down_0|CP020872.1_4041483_4042038_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|down_1|CP020872.1_4042044_4043052_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|313aa|down_2|CP020872.1_4043068_4044007_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|down_3|CP020872.1_4044003_4045341_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|89aa|down_4|CP020872.1_4045448_4045715_+	NA	cas3f|1093aa|down_5|CP020872.1_4046104_4049383_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|327aa|down_6|CP020872.1_4049379_4050360_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|567aa|down_7|CP020872.1_4052216_4053917_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|537aa|down_8|CP020872.1_4054888_4056499_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|487aa|down_9|CP020872.1_4056638_4058099_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCA_003628775.1_ASM362877v1	CP020872	Dickeya fangzhongdai strain PA1 chromosome, complete genome	8	4050658-4051885	5,8,5	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	Type I-F	GTTCACTGCCGAGTAGGCAGCTTAGAAA,GTTCACTGCCGAGTAGGCAGCTTAGAAA,GTTCACTGCCGAGTAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	19,20,20	20	TypeI-F	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	NA|89aa|up_2|CP020872.1_4045448_4045715_+,NA|83aa|down_6|CP020872.1_4062292_4062541_+	NA|159aa|up_9|CP020872.1_4037744_4038221_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_8|CP020872.1_4038472_4039087_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_7|CP020872.1_4039128_4040322_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|up_6|CP020872.1_4041483_4042038_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|up_5|CP020872.1_4042044_4043052_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|313aa|up_4|CP020872.1_4043068_4044007_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|up_3|CP020872.1_4044003_4045341_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|89aa|up_2|CP020872.1_4045448_4045715_+	NA	cas3f|1093aa|up_1|CP020872.1_4046104_4049383_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|327aa|up_0|CP020872.1_4049379_4050360_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|567aa|down_0|CP020872.1_4052216_4053917_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|537aa|down_1|CP020872.1_4054888_4056499_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|487aa|down_2|CP020872.1_4056638_4058099_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|140aa|down_3|CP020872.1_4058103_4058523_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|944aa|down_4|CP020872.1_4058613_4061445_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|182aa|down_5|CP020872.1_4061689_4062235_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|83aa|down_6|CP020872.1_4062292_4062541_+	NA	NA|230aa|down_7|CP020872.1_4062597_4063287_+	PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional	NA|193aa|down_8|CP020872.1_4063356_4063935_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|210aa|down_9|CP020872.1_4063969_4064599_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCA_003628775.1_ASM362877v1	CP020872	Dickeya fangzhongdai strain PA1 chromosome, complete genome	9	4579911-4580016	9	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	Orphan	AAAAAATTTCCGGGAGAAATTTTTAACGTCG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	NA|266aa|up_1|CP020872.1_4578198_4578996_+,NA	NA|562aa|up_9|CP020872.1_4569540_4571226_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|71aa|up_8|CP020872.1_4571404_4571617_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|146aa|up_7|CP020872.1_4572001_4572439_-	PRK02967, PRK02967, nickel-responsive transcriptional regulator NikR	NA|367aa|up_6|CP020872.1_4572637_4573738_-	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|198aa|up_5|CP020872.1_4573938_4574532_+	PRK10739, PRK10739, YhgN family NAAT transporter	NA|439aa|up_4|CP020872.1_4574602_4575919_-	PRK14984, PRK14984, gluconate transporter	NA|173aa|up_3|CP020872.1_4576167_4576686_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|333aa|up_2|CP020872.1_4576696_4577695_-	PRK14987, PRK14987, HTH-type transcriptional regulator GntR	NA|266aa|up_1|CP020872.1_4578198_4578996_+	NA	NA|233aa|up_0|CP020872.1_4579132_4579831_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|400aa|down_0|CP020872.1_4580417_4581617_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|417aa|down_1|CP020872.1_4581616_4582867_-	PRK05329, PRK05329, glycerol-3-phosphate dehydrogenase subunit GlpB	NA|548aa|down_2|CP020872.1_4582856_4584500_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|450aa|down_3|CP020872.1_4584800_4586150_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|361aa|down_4|CP020872.1_4586299_4587382_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|266aa|down_5|CP020872.1_4587372_4588170_-	PRK10976, PRK10976, putative hydrolase; Provisional	NA|331aa|down_6|CP020872.1_4588222_4589215_-	PRK10749, PRK10749, lysophospholipase L2; Provisional	NA|207aa|down_7|CP020872.1_4589328_4589949_+	PRK10520, rhtB, homoserine/homoserine lactone efflux protein; Provisional	NA|159aa|down_8|CP020872.1_4590053_4590530_-	pfam04982, HPP, HPP family	NA|186aa|down_9|CP020872.1_4590625_4591183_+	COG1309, AcrR, Transcriptional regulator [Transcription]
