assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003628695.1_ASM362869v1	CP026983	Pectobacterium parmentieri strain IFB5604 chromosome, complete genome	1	479857-481290	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	23,23,23	23	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA|153aa|down_4|CP026983.1_483951_484410_+	NA|184aa|up_9|CP026983.1_470050_470602_+	pfam04519, Bactofilin, Polymer-forming cytoskeletal	cas3|908aa|up_8|CP026983.1_470629_473353_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|72aa|up_7|CP026983.1_473407_473623_+	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	cas8e|523aa|up_6|CP026983.1_473886_475455_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|212aa|up_5|CP026983.1_475438_476074_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|355aa|up_4|CP026983.1_476077_477142_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|245aa|up_3|CP026983.1_477151_477886_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|CP026983.1_477885_478533_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|306aa|up_1|CP026983.1_478560_479478_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP026983.1_479478_479772_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|124aa|down_0|CP026983.1_481306_481678_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|87aa|down_1|CP026983.1_481751_482012_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|102aa|down_2|CP026983.1_482163_482469_+	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA|108aa|down_3|CP026983.1_482465_482789_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|153aa|down_4|CP026983.1_483951_484410_+	NA	NA|451aa|down_5|CP026983.1_484490_485843_-	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]	NA|424aa|down_6|CP026983.1_485873_487145_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|149aa|down_7|CP026983.1_487299_487746_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|166aa|down_8|CP026983.1_487755_488253_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|218aa|down_9|CP026983.1_488279_488933_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCA_003628695.1_ASM362869v1	CP026983	Pectobacterium parmentieri strain IFB5604 chromosome, complete genome	2	483067-483827	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGNN	29,29,31	0	0	NA	NA	I-E:I-E:I-E	11,11,12	12	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA|153aa|down_0|CP026983.1_483951_484410_+	cse2gr11|212aa|up_9|CP026983.1_475438_476074_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|355aa|up_8|CP026983.1_476077_477142_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|245aa|up_7|CP026983.1_477151_477886_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_6|CP026983.1_477885_478533_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|306aa|up_5|CP026983.1_478560_479478_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_4|CP026983.1_479478_479772_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|124aa|up_3|CP026983.1_481306_481678_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|87aa|up_2|CP026983.1_481751_482012_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|102aa|up_1|CP026983.1_482163_482469_+	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA|108aa|up_0|CP026983.1_482465_482789_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|153aa|down_0|CP026983.1_483951_484410_+	NA	NA|451aa|down_1|CP026983.1_484490_485843_-	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]	NA|424aa|down_2|CP026983.1_485873_487145_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|149aa|down_3|CP026983.1_487299_487746_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|166aa|down_4|CP026983.1_487755_488253_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|218aa|down_5|CP026983.1_488279_488933_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|155aa|down_6|CP026983.1_488944_489409_-	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein	NA|713aa|down_7|CP026983.1_489490_491629_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|129aa|down_8|CP026983.1_492029_492416_-	PRK11401, PRK11401, enamine/imine deaminase	NA|155aa|down_9|CP026983.1_492514_492979_-	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed
GCA_003628695.1_ASM362869v1	CP026983	Pectobacterium parmentieri strain IFB5604 chromosome, complete genome	3	3219989-3220096	3	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	GGCGGGCTATCCCTGCCCGCCACCCTTCGGACCGCCGC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA	NA|216aa|up_9|CP026983.1_3208614_3209262_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|393aa|up_8|CP026983.1_3209273_3210452_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|557aa|up_7|CP026983.1_3210763_3212434_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|206aa|up_6|CP026983.1_3212771_3213389_-	PRK11460, PRK11460, putative hydrolase; Provisional	NA|76aa|up_5|CP026983.1_3213553_3213781_-	COG3813, COG3813, Uncharacterized protein conserved in bacteria [Function unknown]	NA|702aa|up_4|CP026983.1_3214233_3216339_-	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	NA|151aa|up_3|CP026983.1_3216356_3216809_-	COG2707, COG2707, Predicted membrane protein [Function unknown]	NA|238aa|up_2|CP026983.1_3217010_3217724_-	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|346aa|up_1|CP026983.1_3217866_3218904_-	PRK11679, PRK11679, outer membrane protein assembly factor BamC	NA|293aa|up_0|CP026983.1_3218920_3219799_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|183aa|down_0|CP026983.1_3220174_3220723_+	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional	NA|156aa|down_1|CP026983.1_3220785_3221253_+	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed	NA|488aa|down_2|CP026983.1_3221422_3222886_+	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|126aa|down_3|CP026983.1_3222900_3223278_+	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|236aa|down_4|CP026983.1_3223342_3224050_-	PRK08084, PRK08084, DnaA inactivator Hda	NA|430aa|down_5|CP026983.1_3224149_3225439_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|209aa|down_6|CP026983.1_3225654_3226281_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|346aa|down_7|CP026983.1_3226633_3227671_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|212aa|down_8|CP026983.1_3227670_3228306_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|766aa|down_9|CP026983.1_3228479_3230777_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein
GCA_003628695.1_ASM362869v1	CP026983	Pectobacterium parmentieri strain IFB5604 chromosome, complete genome	4	3795382-3796969	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	26,26,24	26	TypeI-F	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	NA|98aa|up_7|CP026983.1_3786577_3786871_+,NA|217aa|up_0|CP026983.1_3794544_3795195_+,NA	NA|294aa|up_9|CP026983.1_3784761_3785643_+	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|219aa|up_8|CP026983.1_3785630_3786287_+	COG3531, COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|98aa|up_7|CP026983.1_3786577_3786871_+	NA	NA|341aa|up_6|CP026983.1_3787067_3788090_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|91aa|up_5|CP026983.1_3788256_3788529_+	PRK09459, pspG, envelope stress response protein PspG	NA|463aa|up_4|CP026983.1_3789007_3790396_-	pfam00067, p450, Cytochrome P450	NA|329aa|up_3|CP026983.1_3790727_3791714_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|469aa|up_2|CP026983.1_3791841_3793248_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|360aa|up_1|CP026983.1_3793289_3794369_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|217aa|up_0|CP026983.1_3794544_3795195_+	NA	NA|160aa|down_0|CP026983.1_3797071_3797551_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|down_1|CP026983.1_3797802_3798417_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|down_2|CP026983.1_3798480_3799674_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|168aa|down_3|CP026983.1_3799806_3800310_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|160aa|down_4|CP026983.1_3800428_3800908_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|139aa|down_5|CP026983.1_3800960_3801377_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|120aa|down_6|CP026983.1_3801402_3801762_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|136aa|down_7|CP026983.1_3801857_3802265_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|135aa|down_8|CP026983.1_3802312_3802717_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|142aa|down_9|CP026983.1_3802762_3803188_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)
GCA_003628695.1_ASM362869v1	CP026983	Pectobacterium parmentieri strain IFB5604 chromosome, complete genome	5	3815059-3820729	4,5,4,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	89,94,94,89	94	TypeI-F	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f	NA|286aa|up_6|CP026983.1_3804973_3805831_-,NA|197aa|down_5|CP026983.1_3827660_3828251_+	NA|136aa|up_9|CP026983.1_3803668_3804076_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|143aa|up_8|CP026983.1_3804122_3804551_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|142aa|up_7|CP026983.1_3804576_3805002_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|286aa|up_6|CP026983.1_3804973_3805831_-	NA	cas6f|185aa|up_5|CP026983.1_3806235_3806790_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|338aa|up_4|CP026983.1_3806799_3807813_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|311aa|up_3|CP026983.1_3807826_3808759_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|445aa|up_2|CP026983.1_3808755_3810090_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1099aa|up_1|CP026983.1_3810489_3813786_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|327aa|up_0|CP026983.1_3813782_3814763_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|140aa|down_0|CP026983.1_3820769_3821189_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|945aa|down_1|CP026983.1_3821206_3824041_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|181aa|down_2|CP026983.1_3824290_3824833_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|614aa|down_3|CP026983.1_3825075_3826917_+	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|153aa|down_4|CP026983.1_3827134_3827593_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|197aa|down_5|CP026983.1_3827660_3828251_+	NA	NA|144aa|down_6|CP026983.1_3828362_3828794_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|144aa|down_7|CP026983.1_3828934_3829366_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|473aa|down_8|CP026983.1_3829457_3830876_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|350aa|down_9|CP026983.1_3830918_3831968_-	COG1609, PurR, Transcriptional regulators [Transcription]
