The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	495414	545469	4575315	transposase,tRNA,holin	Streptococcus_phage(30.0%)	51	NA	NA
AYG57790.1|495414_496572_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AYG57791.1|496584_497277_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AYG57792.1|497428_498229_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AYG57793.1|498747_499728_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AYG57794.1|499839_500127_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
AYG57795.1|500152_500845_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
AYG57796.1|500846_501434_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
AYG57797.1|501448_502042_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AYG57798.1|502204_503323_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	48.9	5.0e-83
AYG57799.1|503569_504478_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	37.8	5.5e-40
AYG57800.1|504470_504839_+	YraN family protein	NA	NA	NA	NA	NA
AYG61262.1|504941_505937_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
AYG57801.1|506034_506538_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AYG57802.1|506636_507584_+	glutathione synthase	NA	NA	NA	NA	NA
AYG57803.1|508446_511902_+	NACHT domain-containing protein	NA	NA	NA	NA	NA
AYG57804.1|512579_513698_-	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
AYG57805.1|513920_514211_+	hypothetical protein	NA	NA	NA	NA	NA
AYG57806.1|514271_515460_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.6	1.2e-47
AYG57807.1|515465_515681_-	hypothetical protein	NA	NA	NA	NA	NA
AYG57808.1|516386_517576_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	44.8	1.5e-53
AYG57809.1|518755_519493_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	45.8	3.4e-56
AYG57810.1|519681_520140_-	hypothetical protein	NA	NA	NA	NA	NA
AYG57811.1|520380_520617_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYG57812.1|520723_521542_-	hypothetical protein	NA	NA	NA	NA	NA
AYG57813.1|523019_523259_+	hypothetical protein	NA	NA	NA	NA	NA
AYG57814.1|523316_523880_-	YecA family protein	NA	NA	NA	NA	NA
AYG57815.1|523876_525451_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	35.0	7.1e-75
AYG57816.1|525499_525856_-|transposase	transposase	transposase	NA	NA	NA	NA
AYG57817.1|525852_526323_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG57818.1|526440_526908_+	hypothetical protein	NA	NA	NA	NA	NA
AYG57819.1|527033_527468_+	hypothetical protein	NA	NA	NA	NA	NA
AYG57820.1|527735_528116_-	hypothetical protein	NA	NA	NA	NA	NA
AYG57821.1|528641_530174_+	ATP-binding protein	NA	NA	NA	NA	NA
AYG57822.1|530665_531769_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYG57823.1|531916_532267_+	hypothetical protein	NA	NA	NA	NA	NA
AYG57824.1|532333_533302_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	53.7	6.9e-81
AYG57825.1|533437_534055_-	LysE family translocator	NA	NA	NA	NA	NA
AYG57826.1|534185_534743_+	cysteine hydrolase	NA	NA	NA	NA	NA
AYG57827.1|534766_535399_+	LysE family translocator	NA	NA	NA	NA	NA
AYG57828.1|535499_535802_-	NIPSNAP family protein	NA	NA	NA	NA	NA
AYG57829.1|535798_536713_-	DMT family transporter	NA	NA	NA	NA	NA
AYG57830.1|536822_537287_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYG57831.1|537283_538177_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYG57832.1|538176_538647_-	dUTP diphosphatase	NA	K4JSC8	Caulobacter_phage	57.3	7.5e-41
AYG57833.1|538739_540323_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.5	1.4e-35
AYG57834.1|540392_541286_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AYG57835.1|541458_541917_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AYG57836.1|542021_543047_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG61263.1|543079_543604_+|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
AYG57837.1|543682_543892_-	transporter	NA	NA	NA	NA	NA
AYG57838.1|543954_545469_-|holin	choline-sulfatase	holin	A0A1V0SA98	Catovirus	26.0	8.4e-25
>prophage 2
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	690767	726525	4575315	transposase	Thermus_phage(10.0%)	34	NA	NA
AYG57966.1|690767_691796_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.2	1.1e-15
AYG57967.1|692212_693250_+	proline racemase	NA	NA	NA	NA	NA
AYG57968.1|693399_694347_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	21.7	2.7e-13
AYG57969.1|694518_694953_-	transporter	NA	NA	NA	NA	NA
AYG57970.1|694936_696184_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
AYG57971.1|696441_697467_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG57972.1|697643_698708_+	ABC transporter permease	NA	NA	NA	NA	NA
AYG61276.1|698704_699493_+	sugar ABC transporter ATP-binding protein	NA	A0A076FI99	Aureococcus_anophage	25.9	6.3e-08
AYG57973.1|699489_700122_+	nucleoside triphosphate hydrolase	NA	NA	NA	NA	NA
AYG57974.1|700220_701261_+	dihydroorotase	NA	NA	NA	NA	NA
AYG57975.1|701442_702621_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	1.5e-16
AYG57976.1|702628_703108_-	DUF1772 domain-containing protein	NA	NA	NA	NA	NA
AYG57977.1|703104_703935_-	NmrA family transcriptional regulator	NA	NA	NA	NA	NA
AYG57978.1|704034_704715_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYG57979.1|704818_705520_+	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	29.9	3.8e-12
AYG57980.1|705594_706521_+	carbohydrate kinase	NA	NA	NA	NA	NA
AYG57981.1|706883_708509_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYG57982.1|708682_710380_-	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.0	2.8e-29
AYG57983.1|710741_711137_+	PRC-barrel domain containing protein	NA	NA	NA	NA	NA
AYG57984.1|711195_711591_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AYG57985.1|711816_712566_-	ABC transporter permease	NA	NA	NA	NA	NA
AYG57986.1|712562_713510_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	27.0	7.6e-08
AYG57987.1|713506_714673_-	ABC transporter permease	NA	NA	NA	NA	NA
AYG57988.1|714800_715709_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG57989.1|716161_717397_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYG57990.1|717894_718194_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AYG57991.1|718400_718481_+	hypothetical protein	NA	NA	NA	NA	NA
AYG57992.1|718696_718912_-	hypothetical protein	NA	NA	NA	NA	NA
AYG57993.1|719382_720601_+|transposase	IS3 family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	53.8	1.4e-75
AYG57994.1|720604_722350_+	ATP-binding protein	NA	NA	NA	NA	NA
AYG57995.1|723349_723883_+	ATP-binding protein	NA	NA	NA	NA	NA
AYG57996.1|724112_724493_+|transposase	transposase	transposase	NA	NA	NA	NA
AYG57997.1|724489_724837_+|transposase	transposase	transposase	S5VXZ8	Leptospira_phage	36.6	3.4e-14
AYG57998.1|724899_726525_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	40.0	2.2e-100
>prophage 3
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	1802829	1824941	4575315	transposase,integrase,protease	uncultured_Mediterranean_phage(25.0%)	21	1816756:1816770	1827209:1827223
AYG61375.1|1802829_1804068_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AYG58901.1|1804177_1805293_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AYG61376.1|1805354_1805702_-	hypothetical protein	NA	NA	NA	NA	NA
AYG58902.1|1805877_1807281_+|protease	DegQ family serine endoprotease	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	33.9	3.1e-13
AYG58903.1|1807277_1808594_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	37.8	6.5e-74
AYG58904.1|1808619_1808934_-	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
AYG58905.1|1809144_1809414_-	hypothetical protein	NA	NA	NA	NA	NA
AYG58906.1|1809445_1809643_-	hypothetical protein	NA	NA	NA	NA	NA
AYG58907.1|1809782_1810724_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AYG58908.1|1810738_1810966_-	hypothetical protein	NA	NA	NA	NA	NA
AYG61377.1|1811410_1812649_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AYG58909.1|1812882_1813893_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AYG61378.1|1814256_1816176_+	hypothetical protein	NA	NA	NA	NA	NA
AYG58910.1|1816218_1816437_+	hypothetical protein	NA	NA	NA	NA	NA
AYG58911.1|1816643_1818092_+	hypothetical protein	NA	NA	NA	NA	NA
1816756:1816770	attL	CGCTCGGCCTCAAGG	NA	NA	NA	NA
AYG58912.1|1818069_1818888_+	hypothetical protein	NA	NA	NA	NA	NA
AYG58913.1|1818887_1819925_+	hypothetical protein	NA	NA	NA	NA	NA
AYG58914.1|1819918_1820911_+	hypothetical protein	NA	NA	NA	NA	NA
AYG58915.1|1820935_1822558_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	30.7	1.2e-58
AYG58916.1|1822849_1823737_+|integrase	integrase	integrase	S5W9T9	Leptospira_phage	32.7	1.6e-31
AYG58917.1|1823747_1824941_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
1827209:1827223	attR	CCTTGAGGCCGAGCG	NA	NA	NA	NA
>prophage 4
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	1900430	1909995	4575315	tRNA	uncultured_Mediterranean_phage(88.89%)	10	NA	NA
AYG58977.1|1900430_1901444_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	1.3e-24
AYG58978.1|1901573_1902413_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.4	2.7e-33
AYG61389.1|1902453_1903152_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.3	4.7e-39
AYG58979.1|1903404_1903608_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	62.7	1.6e-08
AYG58980.1|1903663_1904338_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AYG58981.1|1904334_1905162_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	44.0	1.9e-47
AYG58982.1|1905262_1906546_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.8	2.2e-95
AYG58983.1|1906616_1907390_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.4	2.0e-22
AYG58984.1|1907386_1908040_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.2	2.9e-14
AYG58985.1|1908210_1909995_+	LysM peptidoglycan-binding domain-containing protein	NA	I3PV24	Clostridium_phage	33.3	2.3e-13
>prophage 5
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	2043434	2113455	4575315	holin,tRNA,integrase,transposase	uncultured_Mediterranean_phage(29.41%)	57	2108453:2108512	2113589:2116155
AYG59103.1|2043434_2044160_+|holin	phosphatidylcholine/phosphatidylserine synthase	holin	NA	NA	NA	NA
AYG59104.1|2044172_2045153_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AYG59105.1|2045194_2046769_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	4.2e-19
AYG59106.1|2046758_2047844_+	ABC transporter permease	NA	NA	NA	NA	NA
AYG59107.1|2047840_2048761_+	ABC transporter permease	NA	NA	NA	NA	NA
AYG59108.1|2048814_2049891_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG59109.1|2050036_2050999_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG59110.1|2051200_2052724_+	sugar ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	26.8	1.4e-08
AYG59111.1|2052720_2053749_+	ABC transporter permease	NA	NA	NA	NA	NA
AYG59112.1|2053745_2054714_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA	NA
AYG59113.1|2054730_2055477_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AYG61399.1|2055579_2056941_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	28.9	4.4e-17
AYG59114.1|2057059_2058886_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	5.3e-106
AYG59115.1|2059063_2059768_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
AYG59116.1|2059827_2060919_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYG59117.1|2061197_2062676_+	hypothetical protein	NA	NA	NA	NA	NA
AYG59118.1|2062719_2064825_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AYG61400.1|2064997_2065312_+	succinate dehydrogenase assembly factor 2 family protein	NA	NA	NA	NA	NA
AYG59119.1|2065308_2068809_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AYG61401.1|2068871_2069780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYG59120.1|2069887_2070634_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	29.7	2.8e-13
AYG59121.1|2070636_2071341_+	cupin	NA	NA	NA	NA	NA
AYG59122.1|2071337_2072441_+	FAD-binding protein	NA	NA	NA	NA	NA
AYG59123.1|2072437_2073643_+	MFS transporter	NA	NA	NA	NA	NA
AYG59124.1|2074298_2074703_+	YciI family protein	NA	NA	NA	NA	NA
AYG59125.1|2074699_2075962_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYG59126.1|2076144_2077125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYG59127.1|2077222_2077894_-	DsbA family oxidoreductase	NA	NA	NA	NA	NA
AYG59128.1|2078004_2079813_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG59129.1|2080080_2080740_+	invasion associated locus B family protein	NA	NA	NA	NA	NA
AYG59130.1|2080890_2081220_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYG59131.1|2081453_2082863_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AYG59132.1|2082925_2083264_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AYG61402.1|2083612_2085088_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AYG59133.1|2085094_2085901_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AYG59134.1|2085930_2088852_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.1	0.0e+00
AYG59135.1|2089143_2089704_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	74.6	9.3e-46
AYG59136.1|2089773_2090406_-	MarC family protein	NA	NA	NA	NA	NA
AYG59137.1|2090632_2093434_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.3	3.6e-98
AYG61403.1|2093540_2094431_-	NAD(P)-dependent oxidoreductase	NA	A0A2C9DSV6	Western_grey_kangaroopox_virus	31.8	9.7e-05
AYG61404.1|2095087_2095303_-	hypothetical protein	NA	NA	NA	NA	NA
AYG59138.1|2095498_2096002_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.7	1.6e-25
AYG59139.1|2096039_2096612_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	57.6	1.7e-47
AYG59140.1|2096641_2097151_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	60.6	8.4e-46
AYG59141.1|2097224_2098310_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AYG59142.1|2098316_2099447_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	53.8	7.5e-103
AYG59143.1|2099764_2100535_+	cell wall hydrolase	NA	NA	NA	NA	NA
AYG59144.1|2100629_2101052_-	DUF4864 domain-containing protein	NA	NA	NA	NA	NA
AYG59145.1|2101152_2102418_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AYG61405.1|2102439_2102946_-	transcriptional regulator	NA	NA	NA	NA	NA
AYG59146.1|2103165_2105067_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.6	1.1e-42
AYG59147.1|2105069_2106959_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	4.1e-45
AYG61406.1|2107284_2107941_+	dihydrofolate reductase	NA	NA	NA	NA	NA
2108453:2108512	attL	GGTGAAGGTTTTTCGATGCGGGCCGCGGTGTGACGGTGGCGGCTGGGCGTGTGTCGGCCC	NA	NA	NA	NA
AYG59148.1|2108795_2109989_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AYG59149.1|2109999_2110887_-|integrase	integrase	integrase	S5W9T9	Leptospira_phage	32.7	1.6e-31
AYG59150.1|2111363_2112557_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AYG59151.1|2112567_2113455_-|integrase	integrase	integrase	S5W9T9	Leptospira_phage	32.7	1.6e-31
2113589:2116155	attR	GGTGAAGGTTTTTCGATGCGGGCCGCGGTGTGACGGTGGCGGCTGGGCGTGTGTCGGCCCGCGTTGAAAAACCTTCCAAGGAGGAGGCCTGCGGGGGCTGGGTGGAGCGCCTATGGGGAAAGCGTGCGGCTGCGGTTTTCTGAGGTGGCTATCGGTGGGAGCGTCGGGTGCAAGCGGGTTGCCCCGAAGGCTTGCAATGACGCGATCGGGGTTGGGGTGCTCCTCTTTCGTAGGCCTCGCATCGGCGGTTTTGCAGTGTGCGGCGTTGCCTGGCGCAAATCGGCGCCACCCCGGAATGCATCGCAGATCCGGGCCGGCCTTGGCTGATGTGACAGGCGTTTCGTCATGCGGCGTCCTTTCGGGGTGGCGCACGGGATTTGGGTCGCTGGCCACGGCGGAATATCTCGACGATGCGCATCGGGCCGCCGCAATCTGGGCATGGCTGCCTCAGGGTGAGCGGGATGCTCTCGGCGCTTGGCGTGTCGTCCTGTGATGGCGCTTCCGTCCCGAGCAGTTTCCTTATCTTTGCGACATTGGCCTTGCGGCCTGCTCCGGCCAGCAGGCCGTAGTGGCGGATGCGGTGGAATCCGTCGGGCAGCACGTGGATTAGGAAGCGGCGGATGAACTCGTCGGTGGCCAGCCGCATGACCTTGTGACGGTCACCGGTCTTGATGCGGTAGTCCTTCCAGCGGAAGGTGACCGCCTCGGCATTCGCGCTGATCAGGCGGCTGTTCGAGATCGCCACGCGGTGCGTGTAGCGGCTGAGATAGGCCAGCACGGCCTCGGGGCCGCCGAATGGGGGCTTGGTGTAGACGACCCAGTCGGATTTGCGGAAGGGGGCAAGCCAGGCAGCGAAGGCATCCGCCTCTGCAAGCCGGGCTAGATCGCCGAAGAAGCAGAGCACCCCGGATTGACTGAGTGCCATCAGTCCTTCGAGAAACAGCCGCCGAAACAGACGAGACAGAACCTTTATGGGCAGAAGGAACCCCGGGCGACAGCCAATCCAGCGCGTGCCATCCGGCGACAGTCCACCGCCGGGCACGACGATGTGCACATGCGGGTGATGGGTCAGCGCCGACCCCCAGGTGTGCAGCACGCTGGTCATGCCGATGTTTGCGCCAAGGTGCCGGGGATCGGCGGCGATGGTGGTCAACGTCTCCGCCGATGCCCGGAATAGAAGATCATAGACCGTCTTCTTATTCCAATAGGCGATCTGCGCGATCTCGGCGGGGATGGTGAAGACAACATGGAAATACTCGACCGGCAGCAGGTCTTCGGCACGGGCGGCCATCCAGTCCCGCGCCGCGGGTCCCTGGCACTTCGGGCAGTGCCGATTCTTGCAGGAATTGTAGGCGATGTGATGGTGGCCGCATTTGGCACAGGCTGCCACATGCCCGCCGAGCGCCTCGGTTCGGCAGGCCTCGATCGCCGCCATGACCTTGAGCTGGGTCAGGCTAACATGCCCGGCATTGGCCCGCCGCCACGCCGGGCCATAGGCACGGAAGATGTCGGCGATCTCCAGTTTTGGCCGGATCACCGGACGGGCGCTACTCCAGTTCGCGTCGGAGCGTTTGGTCCTGCAGCTTCTTCAGGGTCTCGAACGGGCTGATCGTGTCGCGGATCGTCTTCGTGGCGACATGCATATAACGGGCGGTGGTCGTCAGCTTGGCGTGTCCCAGAAGGACCTGGATCACCCGCACATCCGTGTTCGCTTCCAGCAGGTGGGTGGCAAAACTGTGCCGCAGGGTGTGCAGCGTCGCTGGCTTGGCGATCCCGGCCAGTTTTTTGGCGGCGGTGAAGGCGCGGTTGAGCTGCCGCGGCGAGATCGGGTTGATCTTCGGTTTGCCAGGAAAAAGCCAGCCCTGCGGCCGTGACTCGCGCCAATAGTCGCGCAAGAGTTCCAGCAGCAGGGGCGACAGCATCACCTTGCGGTCCTTCTGTCCCTTGCCCTGTTCGACATGGATCAGCATCCGATCGCTGTCGATGTCGCTGATCTTGAGGTTGCAGACTTCGGAGGCCCGCAGTCCGGCGCCATAGGAGATGCTGAGCGCCGCTCGATACTTCAGGCCCGGCCCCTGGGCCGCCACAAGCAGGTCGGAAACCTCCTCAACGCTCAAGACAACGGGCAACTTCTGCGGTTGCCGACGGAACTGCATATGCCGCTTCATCTCTTCGCGGTCGCAGGTGATGCCGAAAAAGAACCTCAGCGCGACGATGCGGGCGTTGAAGGTCGGCGGCGTGACGCCCGCATTGGTCATGTGCAATTGGTAGGCGCGCAGGTCGTCGGGTGTCGCGGTATCCGGAGATCGCTTCAGAAACCCGGCGAAATCCTTGATCGCCCGAATATGGGCTTGCCGGACTTTGTCGCCCATCCCGCGGATGCGCATGTCTTCGATCATCCGTTCGCGCAGCGGGGTCGTCTTCTCCTCCGTCATGGGAACCTCCTGTCTGGTGATTGAGAAGACCCCAATCCTCAGCCAGGACGGCAAACCCACAAAATGCACGGCGTTCAGATCGTTGCTGCACCGTCACCACGGGCGCCAATGCCGCGCGAGCGGCTTCGTCCT	NA	NA	NA	NA
>prophage 6
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	2567012	2627582	4575315	transposase,integrase,protease	Acidithiobacillus_phage(15.38%)	56	2621622:2621640	2634433:2634451
AYG59533.1|2567012_2567447_-|transposase	IS200/IS605 family transposase	transposase	W0UUZ0	Sulfolobus_monocaudavirus	35.2	3.7e-18
AYG59534.1|2567616_2568561_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AYG59535.1|2568560_2569694_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AYG59536.1|2569855_2570374_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	36.4	1.9e-24
AYG61443.1|2570477_2571314_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYG59537.1|2571414_2571981_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYG59538.1|2572264_2572792_+	N-acetyltransferase family protein	NA	NA	NA	NA	NA
AYG59539.1|2572805_2573252_+	EamA-like transporter family protein	NA	NA	NA	NA	NA
AYG59540.1|2573248_2574169_-	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	48.8	3.2e-75
AYG59541.1|2574851_2575358_+	hypothetical protein	NA	NA	NA	NA	NA
AYG59542.1|2575409_2575604_+	DUF4169 family protein	NA	NA	NA	NA	NA
AYG61444.1|2575712_2575925_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AYG59543.1|2576042_2579750_-	AsmA family protein	NA	NA	NA	NA	NA
AYG59544.1|2580003_2581416_-	FAD-binding protein	NA	NA	NA	NA	NA
AYG59545.1|2581561_2582254_-	hypothetical protein	NA	NA	NA	NA	NA
AYG59546.1|2582499_2583381_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYG59547.1|2583416_2583824_+	DUF2000 family protein	NA	NA	NA	NA	NA
AYG61445.1|2583893_2584562_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AYG59548.1|2584764_2585847_-	flagellin C	NA	NA	NA	NA	NA
AYG59549.1|2586026_2589185_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AYG59550.1|2589181_2590351_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYG59551.1|2590718_2593196_+	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	38.0	2.0e-116
AYG59552.1|2593347_2593821_+	VOC family protein	NA	NA	NA	NA	NA
AYG59553.1|2593845_2594727_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG59554.1|2594921_2595146_-	hypothetical protein	NA	NA	NA	NA	NA
AYG59555.1|2595343_2597137_+	hypothetical protein	NA	NA	NA	NA	NA
AYG59556.1|2597369_2597849_-	ATPase	NA	NA	NA	NA	NA
AYG59557.1|2597832_2598189_-	transcriptional regulator	NA	NA	NA	NA	NA
AYG59558.1|2598455_2599985_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	45.2	4.4e-122
AYG59559.1|2599997_2600735_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	45.8	3.4e-56
AYG59560.1|2600907_2601549_+	deaminase	NA	NA	NA	NA	NA
AYG59561.1|2601918_2603202_+	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
AYG61446.1|2603313_2603937_+	bifunctional nicotinamidase/pyrazinamidase	NA	NA	NA	NA	NA
AYG59562.1|2604018_2605104_+	glycosyltransferase family 1 protein	NA	J7Q7I8	Aeropyrum_coil-shaped_virus	29.9	2.5e-07
AYG59563.1|2605105_2606503_-	hypothetical protein	NA	NA	NA	NA	NA
AYG59564.1|2606690_2607566_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AYG59565.1|2607567_2608389_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	M4QNT1	Ostreococcus_lucimarinus_virus	34.9	7.2e-39
AYG59566.1|2608463_2609213_+	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA	NA
AYG59567.1|2609214_2609484_-	DUF2164 domain-containing protein	NA	NA	NA	NA	NA
AYG59568.1|2609623_2610346_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYG59569.1|2610348_2610660_+	AzlD family protein	NA	NA	NA	NA	NA
AYG59570.1|2610796_2612632_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	34.2	1.5e-89
AYG59571.1|2613353_2614232_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AYG59572.1|2614253_2615390_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
AYG59573.1|2615398_2616001_-	SCO family protein	NA	NA	NA	NA	NA
AYG61447.1|2616400_2616865_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA	NA
AYG59574.1|2617131_2617626_-	CREA protein	NA	A0A2I7SAK3	Vibrio_phage	30.2	9.8e-15
AYG59575.1|2617733_2618180_-	ATPase	NA	NA	NA	NA	NA
AYG59576.1|2618232_2618556_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYG59577.1|2618675_2619665_-	NAD(P)-dependent oxidoreductase	NA	A0A0E3FNQ3	Synechococcus_phage	25.9	1.9e-17
AYG59578.1|2619680_2620892_-	glycosyltransferase	NA	NA	NA	NA	NA
AYG59579.1|2621279_2621816_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
2621622:2621640	attL	CTTGCCGCTCTCGTCGACG	NA	NA	NA	NA
AYG59580.1|2621860_2624014_-	NAD-dependent DNA ligase LigA	NA	A0A1W6DX16	Sphingobium_phage	39.5	2.9e-119
AYG59581.1|2624390_2625134_+	CDP-diacylglycerol pyrophosphatase	NA	NA	NA	NA	NA
AYG59582.1|2625490_2626684_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AYG59583.1|2626694_2627582_-|integrase	integrase	integrase	S5W9T9	Leptospira_phage	32.7	1.6e-31
2634433:2634451	attR	CGTCGACGAGAGCGGCAAG	NA	NA	NA	NA
>prophage 7
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	2894109	2947583	4575315	holin,protease,transposase	Bacillus_virus(25.0%)	48	NA	NA
AYG59820.1|2894109_2894697_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	36.8	1.7e-29
AYG59821.1|2894928_2895711_+	DUF2076 domain-containing protein	NA	NA	NA	NA	NA
AYG59822.1|2895771_2896236_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	50.4	2.2e-29
AYG59823.1|2896237_2897152_-	cation transporter	NA	NA	NA	NA	NA
AYG61463.1|2897617_2898313_+	5,6-dimethylbenzimidazole synthase	NA	NA	NA	NA	NA
AYG59824.1|2898373_2900563_-	anthranilate synthase	NA	NA	NA	NA	NA
AYG59825.1|2901006_2902551_-	ABC transporter ATP-binding protein	NA	A0A1V0SKJ1	Klosneuvirus	23.3	1.2e-29
AYG59826.1|2902987_2905210_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AYG59827.1|2905489_2906293_+	extensin	NA	NA	NA	NA	NA
AYG59828.1|2906465_2908037_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	22.6	2.5e-32
AYG59829.1|2908033_2909533_+	hypothetical protein	NA	NA	NA	NA	NA
AYG59830.1|2909532_2909784_+	acyl carrier protein	NA	NA	NA	NA	NA
AYG59831.1|2909846_2911526_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
AYG59832.1|2911702_2912215_+	TIGR00645 family protein	NA	NA	NA	NA	NA
AYG59833.1|2912230_2913208_-	hypothetical protein	NA	NA	NA	NA	NA
AYG61464.1|2914047_2914779_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AYG59834.1|2914883_2916023_-	DUF2333 family protein	NA	NA	NA	NA	NA
AYG59835.1|2916217_2917240_-	hypothetical protein	NA	NA	NA	NA	NA
AYG59836.1|2917321_2917708_-	cytochrome c family protein	NA	NA	NA	NA	NA
AYG59837.1|2917804_2918386_-	thymidine kinase	NA	A0A193GZ25	Escherichia_phage	56.8	3.9e-55
AYG59838.1|2918617_2919574_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
AYG61465.1|2919745_2920603_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
AYG59839.1|2920599_2921649_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	32.8	1.3e-21
AYG59840.1|2921815_2922781_-	dienelactone hydrolase	NA	NA	NA	NA	NA
AYG59841.1|2922964_2923291_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AYG59842.1|2923287_2923860_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AYG59843.1|2923895_2924603_+	DUF2807 domain-containing protein	NA	NA	NA	NA	NA
AYG59844.1|2924620_2925013_-	GFA family protein	NA	NA	NA	NA	NA
AYG61466.1|2925175_2925925_+	HugZ family protein	NA	NA	NA	NA	NA
AYG59845.1|2926038_2926356_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYG61467.1|2926725_2928054_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AYG61468.1|2928290_2929529_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AYG59846.1|2929587_2929992_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
AYG59847.1|2930163_2931861_+	adenine deaminase	NA	NA	NA	NA	NA
AYG59848.1|2931861_2933508_-	alpha-glucosidase	NA	NA	NA	NA	NA
AYG59849.1|2933804_2935385_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYG59850.1|2935434_2936358_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AYG59851.1|2936354_2937272_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AYG59852.1|2937273_2938269_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	9.1e-20
AYG59853.1|2938261_2939248_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	26.0	3.9e-15
AYG61469.1|2939341_2940259_+	sugar kinase	NA	NA	NA	NA	NA
AYG59854.1|2940382_2941489_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AYG59855.1|2941898_2942339_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYG59856.1|2942351_2943779_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AYG59857.1|2943794_2944478_-	hypothetical protein	NA	NA	NA	NA	NA
AYG59858.1|2944578_2945160_-	NnrU family protein	NA	NA	NA	NA	NA
AYG61470.1|2945360_2946341_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AYG59859.1|2946479_2947583_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP032694	Rhizobium jaguaris strain CCGE525 chromosome, complete genome	4575315	4471655	4500618	4575315	transposase,integrase	Acidithiobacillus_phage(25.0%)	30	4462311:4462327	4492056:4492072
4462311:4462327	attL	AGCGGTGAAGACTATCT	NA	NA	NA	NA
AYG61127.1|4471655_4472604_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	21.7	2.7e-13
AYG61128.1|4472694_4473837_-	glycosyltransferase	NA	NA	NA	NA	NA
AYG61603.1|4473981_4474440_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	59.1	3.8e-37
AYG61129.1|4474384_4475365_+|integrase	integrase	integrase	F8TUV0	EBPR_podovirus	58.5	2.7e-101
AYG61130.1|4475714_4476350_-	DUF1109 family protein	NA	NA	NA	NA	NA
AYG61131.1|4476336_4476903_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYG61132.1|4477333_4477933_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYG61133.1|4478113_4478416_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AYG61134.1|4478505_4479462_-	hypothetical protein	NA	NA	NA	NA	NA
AYG61135.1|4479875_4480793_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
AYG61604.1|4481509_4481971_+	BA14K family protein	NA	NA	NA	NA	NA
AYG61136.1|4482434_4483913_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYG61137.1|4484020_4484881_+	galactosyl transferase	NA	NA	NA	NA	NA
AYG61138.1|4484984_4485974_+	acyltransferase	NA	NA	NA	NA	NA
AYG61139.1|4486674_4487580_+	HEPN domain-containing protein	NA	NA	NA	NA	NA
AYG61140.1|4487966_4488422_+	hypothetical protein	NA	NA	NA	NA	NA
AYG61141.1|4488469_4489658_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	44.8	1.5e-53
AYG61142.1|4489662_4490121_+	hypothetical protein	NA	NA	NA	NA	NA
AYG61143.1|4490141_4490345_-	superinfection immunity protein	NA	E5FIG5	Escherichia_phage	37.7	8.3e-05
AYG61144.1|4490334_4490904_-	hypothetical protein	NA	NA	NA	NA	NA
AYG61145.1|4491079_4491349_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYG61146.1|4491406_4492897_-	ATP-binding protein	NA	NA	NA	NA	NA
4492056:4492072	attR	AGATAGTCTTCACCGCT	NA	NA	NA	NA
AYG61147.1|4493382_4493997_+	resolvase	NA	NA	NA	NA	NA
AYG61148.1|4494608_4496138_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	45.2	4.4e-122
AYG61149.1|4496150_4496888_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	45.8	3.4e-56
AYG61150.1|4496934_4497201_-	hypothetical protein	NA	NA	NA	NA	NA
AYG61151.1|4497654_4497975_-	hypothetical protein	NA	NA	NA	NA	NA
AYG61152.1|4498078_4498642_-	YecA family protein	NA	NA	NA	NA	NA
AYG61153.1|4498638_4500213_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	35.0	1.0e-73
AYG61154.1|4500261_4500618_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	550563	270348	338310	550563	transposase	Klosneuvirus(42.86%)	45	NA	NA
AYG64091.1|270348_271386_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYG64092.1|273775_274935_-|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	31.5	6.2e-20
AYG64093.1|274935_275595_-	recombinase family protein	NA	NA	NA	NA	NA
AYG64094.1|278043_280269_-	recombinase family protein	NA	NA	NA	NA	NA
AYG64095.1|280431_280611_+	hypothetical protein	NA	NA	NA	NA	NA
AYG64096.1|280703_281012_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64097.1|281037_282513_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYG64098.1|282633_282837_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64099.1|282962_283571_-	adenylate kinase	NA	NA	NA	NA	NA
AYG64296.1|283897_284674_-	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	NA	G9BWD6	Planktothrix_phage	37.7	5.4e-28
AYG64100.1|284786_285455_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AYG64101.1|285451_286123_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AYG64102.1|286192_287077_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AYG64103.1|287423_287834_+	hypothetical protein	NA	NA	NA	NA	NA
AYG64104.1|287883_288648_-	Asp/Glu racemase	NA	NA	NA	NA	NA
AYG64105.1|289187_289379_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64106.1|292864_294037_-	amidohydrolase	NA	NA	NA	NA	NA
AYG64107.1|294159_295632_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYG64108.1|295770_297111_-	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.9	5.7e-25
AYG64109.1|297521_297809_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64297.1|298148_298967_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AYG64110.1|299505_299970_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYG64298.1|300594_301092_+	UPF0262 family protein	NA	NA	NA	NA	NA
AYG64299.1|301352_302708_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AYG64111.1|302942_303464_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYG64112.1|303899_305099_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AYG64113.1|305132_306275_+	M20 family peptidase	NA	NA	NA	NA	NA
AYG64300.1|306836_308000_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
AYG64114.1|308789_310193_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.9	6.0e-17
AYG64115.1|310354_311773_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AYG64116.1|312000_313638_+	MFS transporter	NA	NA	NA	NA	NA
AYG64117.1|315100_317467_+	penicillin acylase family protein	NA	NA	NA	NA	NA
AYG64118.1|320668_322198_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	44.3	1.4e-120
AYG64119.1|322210_322948_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.8e-57
AYG64120.1|325776_326802_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYG64121.1|326964_327912_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYG64122.1|328200_329085_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AYG64123.1|329243_330401_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
AYG64124.1|330590_331409_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64301.1|332044_332302_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYG64125.1|332621_333758_+	hypothetical protein	NA	A0A1V0SI18	Klosneuvirus	28.6	1.4e-11
AYG64126.1|333720_334065_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64302.1|334372_335269_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYG64127.1|335618_336623_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYG64128.1|336756_338310_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	550563	469291	497965	550563	transposase,tail	Stx2-converting_phage(42.86%)	22	NA	NA
AYG64221.1|469291_469879_-|tail	tail fiber protein	tail	A0A291LA10	Bordetella_phage	32.8	2.4e-12
AYG64222.1|470020_470716_-	protein rhiA	NA	NA	NA	NA	NA
AYG64318.1|471519_471708_+	hypothetical protein	NA	NA	NA	NA	NA
AYG64223.1|471851_472094_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64224.1|472169_473822_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	39.2	1.5e-80
AYG64225.1|473884_474238_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG64226.1|474234_474678_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG64227.1|474599_474830_-	hypothetical protein	NA	NA	NA	NA	NA
AYG64228.1|475744_477136_+	glycosyl transferase family 2	NA	NA	NA	NA	NA
AYG64229.1|477128_478406_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYG64230.1|478406_479843_+	radical SAM protein	NA	NA	NA	NA	NA
AYG64231.1|480027_480261_+	hypothetical protein	NA	NA	NA	NA	NA
AYG64232.1|480709_481093_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG64233.1|481089_481434_+|transposase	transposase	transposase	NA	NA	NA	NA
AYG64234.1|482478_483360_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	47.2	9.5e-53
AYG64319.1|483356_484619_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	35.2	2.7e-45
AYG64320.1|485543_486152_+	YecA family protein	NA	NA	NA	NA	NA
AYG64235.1|486663_493122_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	24.0	9.8e-115
AYG64321.1|493139_494525_+	MATE family efflux transporter	NA	NA	NA	NA	NA
AYG64236.1|494701_495427_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
AYG64237.1|495929_497555_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	40.0	2.2e-100
AYG64238.1|497617_497965_-|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	55.2	2.3e-26
>prophage 1
CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2584926	707062	762837	2584926	transposase	Stx2-converting_phage(22.22%)	53	NA	NA
AYG62178.1|707062_708290_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	67.8	3.9e-105
AYG62179.1|708447_708909_+	hypothetical protein	NA	NA	NA	NA	NA
AYG62180.1|709498_709942_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG62181.1|709886_711308_+	hypothetical protein	NA	NA	NA	NA	NA
AYG62182.1|711310_711799_+	hypothetical protein	NA	NA	NA	NA	NA
AYG62183.1|713182_713725_-	YecA family protein	NA	NA	NA	NA	NA
AYG62184.1|713755_714975_-|transposase	IS3 family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	53.8	1.4e-75
AYG62185.1|715066_716641_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	35.0	7.1e-75
AYG62186.1|716689_717046_-|transposase	transposase	transposase	NA	NA	NA	NA
AYG62187.1|717042_717513_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG62188.1|718504_719308_+	sensor/response regulator hybrid	NA	NA	NA	NA	NA
AYG62189.1|719565_720501_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYG62190.1|721007_721268_+	hypothetical protein	NA	NA	NA	NA	NA
AYG62191.1|722328_724752_+	PAS domain-containing sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.6	2.6e-07
AYG62192.1|724746_725139_-	response regulator	NA	NA	NA	NA	NA
AYG62193.1|725476_726112_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYG62194.1|726461_726602_-	DUF2474 family protein	NA	NA	NA	NA	NA
AYG62195.1|726601_727609_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AYG62196.1|727613_729047_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AYG62197.1|729034_729277_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62198.1|729552_729954_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62199.1|730611_730992_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AYG62200.1|731394_731601_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62201.1|731940_732381_-	pseudoazurin	NA	NA	NA	NA	NA
AYG63724.1|732531_733944_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.9	1.3e-43
AYG62202.1|734251_734575_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62203.1|734772_735306_-	DUF1993 domain-containing protein	NA	NA	NA	NA	NA
AYG63725.1|735967_737944_+	transketolase	NA	NA	NA	NA	NA
AYG62204.1|738710_739310_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PC92	Moumouvirus	47.1	8.5e-13
AYG63726.1|739589_740543_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYG62205.1|740554_741073_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62206.1|741366_741837_-	DUF4863 family protein	NA	NA	NA	NA	NA
AYG62207.1|741811_742414_-	response regulator	NA	NA	NA	NA	NA
AYG63727.1|742269_742917_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AYG62208.1|743098_745015_-	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	20.4	1.9e-05
AYG62209.1|745577_746021_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62210.1|746086_746620_-	AhpC/TSA family protein	NA	NA	NA	NA	NA
AYG62211.1|746895_747087_+	hypothetical protein	NA	NA	NA	NA	NA
AYG62212.1|747248_748499_-	2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	26.6	2.8e-18
AYG62213.1|749027_749552_+	DUF1295 domain-containing protein	NA	NA	NA	NA	NA
AYG62214.1|750088_750655_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
AYG62215.1|750807_751014_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62216.1|751220_752282_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYG62217.1|752551_753469_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
AYG62218.1|753827_754124_+	hypothetical protein	NA	NA	NA	NA	NA
AYG62219.1|754916_756194_+	ergothioneine biosynthesis protein EgtB	NA	NA	NA	NA	NA
AYG62220.1|756241_756496_+	DUF2171 domain-containing protein	NA	NA	NA	NA	NA
AYG62221.1|756608_757637_+	transaldolase	NA	NA	NA	NA	NA
AYG62222.1|757732_758014_+	DUF427 domain-containing protein	NA	NA	NA	NA	NA
AYG62223.1|758130_759090_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYG62224.1|759586_760351_+	DUF1993 family protein	NA	NA	NA	NA	NA
AYG62225.1|760752_761109_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62226.1|761184_762837_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	39.2	1.5e-80
>prophage 2
CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2584926	964813	997476	2584926	transposase	Stx2-converting_phage(16.67%)	31	NA	NA
AYG62392.1|964813_965170_+|transposase	transposase	transposase	NA	NA	NA	NA
AYG62393.1|965218_966793_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	35.0	7.1e-75
AYG62394.1|966789_967353_+	YecA family protein	NA	NA	NA	NA	NA
AYG62395.1|967920_969450_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	45.2	4.4e-122
AYG62396.1|969462_970200_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	45.8	3.4e-56
AYG62397.1|970311_970740_-|transposase	transposase	transposase	NA	NA	NA	NA
AYG62398.1|970656_971025_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG62399.1|971021_971375_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AYG62400.1|971437_973090_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	39.2	1.5e-80
AYG62401.1|973979_974696_-	transaldolase	NA	A0A1Z1LWE4	Synechococcus_phage	30.0	6.2e-10
AYG62402.1|974692_975223_-	HAD family hydrolase	NA	NA	NA	NA	NA
AYG62403.1|975223_975823_-	SIS domain-containing protein	NA	NA	NA	NA	NA
AYG62404.1|975819_976524_-	nucleotidyl transferase	NA	NA	NA	NA	NA
AYG62405.1|976523_977507_-	galactokinase	NA	A0A067XQL1	Caulobacter_phage	38.3	1.2e-43
AYG62406.1|977490_978495_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AYG62407.1|978494_978710_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62408.1|978709_979588_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYG62409.1|979587_980895_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	32.0	2.4e-44
AYG62410.1|980896_981859_-	NAD-dependent epimerase/dehydratase family protein	NA	Q58M85	Prochlorococcus_phage	29.6	1.0e-28
AYG62411.1|981861_982263_-	GtrA family protein	NA	NA	NA	NA	NA
AYG62412.1|982364_982559_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62413.1|982555_983503_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	39.8	2.3e-52
AYG62414.1|984559_986380_+	hypothetical protein	NA	NA	NA	NA	NA
AYG62415.1|986527_987622_+	acyltransferase	NA	C6ZR20	Salmonella_phage	27.9	8.0e-09
AYG63748.1|987933_989064_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AYG62416.1|989106_992025_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AYG62417.1|992031_993246_-	FkbM family methyltransferase	NA	NA	NA	NA	NA
AYG62418.1|993444_994413_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AYG62419.1|994442_995417_-	GDP-mannose 4,6-dehydratase	NA	Q58M98	Prochlorococcus_phage	53.2	4.8e-90
AYG62420.1|995737_995962_-	hypothetical protein	NA	NA	NA	NA	NA
AYG62421.1|996276_997476_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.9	3.3e-93
