assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003627375.1_ASM362737v1	CP032659	Lactobacillus pentosus strain ZFM94 chromosome, complete genome	1	29849-31033	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	Orphan	GGATCACCCCCGCATACACGGGGAACAG,GGATCACCCCCGCATACACGGGGAACAG,GGATCACCCCCGCATACACGGGGAACAG	28,28,28	0	0	NA	NA	NA:NA:NA	19,19,15	19	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	NA|70aa|up_1|CP032659.1_28838_29048_+,NA|162aa|up_0|CP032659.1_29118_29604_+,NA	NA|341aa|up_9|CP032659.1_11448_12471_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|350aa|up_8|CP032659.1_12474_13524_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|414aa|up_7|CP032659.1_13594_14836_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|396aa|up_6|CP032659.1_14956_16144_-	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase	NA|79aa|up_5|CP032659.1_16336_16573_+	pfam08796, DUF1797, Protein of unknown function (DUF1797)	NA|702aa|up_4|CP032659.1_16729_18835_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|421aa|up_3|CP032659.1_18993_20256_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|421aa|up_2|CP032659.1_27424_28687_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|70aa|up_1|CP032659.1_28838_29048_+	NA	NA|162aa|up_0|CP032659.1_29118_29604_+	NA	NA|186aa|down_0|CP032659.1_31400_31958_-	PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional	NA|173aa|down_1|CP032659.1_33004_33523_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|279aa|down_2|CP032659.1_33637_34474_-	cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain	NA|291aa|down_3|CP032659.1_34866_35739_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|297aa|down_4|CP032659.1_36028_36919_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|405aa|down_5|CP032659.1_36931_38146_+	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily	NA|301aa|down_6|CP032659.1_38138_39041_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|442aa|down_7|CP032659.1_39383_40709_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|320aa|down_8|CP032659.1_40695_41655_-	pfam00762, Ferrochelatase, Ferrochelatase	NA|464aa|down_9|CP032659.1_42215_43607_-	PRK11387, PRK11387, S-methylmethionine permease
GCA_003627375.1_ASM362737v1	CP032659	Lactobacillus pentosus strain ZFM94 chromosome, complete genome	2	278336-278609	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	Type I-E	AGGATCACCCCCGCATACACGGGGAACAG,AGGATCACCCCCGTATGC,GGATCACCCCCGTATGCGCGGGGAATAG	29,18,28	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	NA,NA|161aa|down_7|CP032659.1_289102_289585_-	NA|172aa|up_9|CP032659.1_268549_269065_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|479aa|up_8|CP032659.1_269086_270523_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|312aa|up_7|CP032659.1_270526_271462_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|655aa|up_6|CP032659.1_271794_273759_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|174aa|up_5|CP032659.1_273980_274502_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|up_4|CP032659.1_274523_274718_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|119aa|up_3|CP032659.1_274754_275111_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|421aa|up_2|CP032659.1_275353_276616_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|up_1|CP032659.1_276843_277593_+	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase	NA|138aa|up_0|CP032659.1_277894_278308_-	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	cas3|916aa|down_0|CP032659.1_280074_282822_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|584aa|down_1|CP032659.1_282826_284578_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|204aa|down_2|CP032659.1_284567_285179_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|360aa|down_3|CP032659.1_285178_286258_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|down_4|CP032659.1_286238_286964_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|down_5|CP032659.1_286963_287632_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|438aa|down_6|CP032659.1_287785_289099_-	PRK11204, PRK11204, N-glycosyltransferase; Provisional	NA|161aa|down_7|CP032659.1_289102_289585_-	NA	NA|177aa|down_8|CP032659.1_290414_290945_+	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only]	NA|379aa|down_9|CP032659.1_290941_292078_+	PRK13796, PRK13796, GTPase YqeH; Provisional
GCA_003627375.1_ASM362737v1	CP032659	Lactobacillus pentosus strain ZFM94 chromosome, complete genome	3	278745-279544	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	Type I-E	AGGATCACCCCCGCATACACGGGGAACAG,GGATCACCCCCGCATACACGGGGAACAG,GGATCACCCCCGCATACACGGGGAACAG	29,28,28	0	0	NA	NA	NA:NA:NA	12,11,10	12	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	NA,NA|161aa|down_7|CP032659.1_289102_289585_-	NA|172aa|up_9|CP032659.1_268549_269065_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|479aa|up_8|CP032659.1_269086_270523_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|312aa|up_7|CP032659.1_270526_271462_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|655aa|up_6|CP032659.1_271794_273759_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|174aa|up_5|CP032659.1_273980_274502_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|up_4|CP032659.1_274523_274718_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|119aa|up_3|CP032659.1_274754_275111_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|421aa|up_2|CP032659.1_275353_276616_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|up_1|CP032659.1_276843_277593_+	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase	NA|138aa|up_0|CP032659.1_277894_278308_-	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	cas3|916aa|down_0|CP032659.1_280074_282822_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|584aa|down_1|CP032659.1_282826_284578_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|204aa|down_2|CP032659.1_284567_285179_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|360aa|down_3|CP032659.1_285178_286258_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|down_4|CP032659.1_286238_286964_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|down_5|CP032659.1_286963_287632_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|438aa|down_6|CP032659.1_287785_289099_-	PRK11204, PRK11204, N-glycosyltransferase; Provisional	NA|161aa|down_7|CP032659.1_289102_289585_-	NA	NA|177aa|down_8|CP032659.1_290414_290945_+	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only]	NA|379aa|down_9|CP032659.1_290941_292078_+	PRK13796, PRK13796, GTPase YqeH; Provisional
GCA_003627375.1_ASM362737v1	CP032659	Lactobacillus pentosus strain ZFM94 chromosome, complete genome	4	2446354-2447907	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2,csa3	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	Type II-B,Type II-A,Type II-C	GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC,GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC,GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	23,23,23	23	TypeII-B,TypeII-A,TypeII-C	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	NA|237aa|up_5|CP032659.1_2438436_2439147_+,NA	NA|115aa|up_9|CP032659.1_2433545_2433890_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|531aa|up_8|CP032659.1_2434261_2435854_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|155aa|up_7|CP032659.1_2436200_2436665_-	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|455aa|up_6|CP032659.1_2436902_2438267_+	PRK10746, PRK10746, putative transport protein YifK; Provisional	NA|237aa|up_5|CP032659.1_2438436_2439147_+	NA	NA|261aa|up_4|CP032659.1_2439171_2439954_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	cas9|1359aa|up_3|CP032659.1_2440196_2444273_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|CP032659.1_2444466_2445372_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|CP032659.1_2445349_2445655_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|226aa|up_0|CP032659.1_2445651_2446329_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|915aa|down_0|CP032659.1_2448079_2450824_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|65aa|down_1|CP032659.1_2451274_2451469_-	pfam04024, PspC, PspC domain	NA|201aa|down_2|CP032659.1_2451533_2452136_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|158aa|down_3|CP032659.1_2452245_2452719_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|141aa|down_4|CP032659.1_2452863_2453286_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|411aa|down_5|CP032659.1_2453612_2454845_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	csa3|107aa|down_6|CP032659.1_2455061_2455382_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|397aa|down_7|CP032659.1_2455443_2456634_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|283aa|down_8|CP032659.1_2456970_2457819_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|291aa|down_9|CP032659.1_2457903_2458776_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)
GCA_003627375.1_ASM362737v1	CP032659	Lactobacillus pentosus strain ZFM94 chromosome, complete genome	5	2708162-2708240	5	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	Orphan	ATGACAAGAGCGTATCAAGCTTTAG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	NA,NA|63aa|down_3|CP032659.1_2711685_2711874_+	NA|90aa|up_9|CP032659.1_2698276_2698546_+	PRK13765, PRK13765, ATP-dependent protease Lon; Provisional	NA|188aa|up_8|CP032659.1_2698965_2699529_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|223aa|up_7|CP032659.1_2699722_2700391_+	cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway	NA|502aa|up_6|CP032659.1_2700736_2702242_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|123aa|up_5|CP032659.1_2702534_2702903_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|421aa|up_4|CP032659.1_2703128_2704391_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|170aa|up_3|CP032659.1_2704546_2705056_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|399aa|up_2|CP032659.1_2705086_2706283_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|157aa|up_1|CP032659.1_2706393_2706864_+	pfam02082, Rrf2, Transcriptional regulator	NA|203aa|up_0|CP032659.1_2707471_2708080_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|307aa|down_0|CP032659.1_2708341_2709262_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|304aa|down_1|CP032659.1_2709398_2710310_+	PRK06182, PRK06182, short chain dehydrogenase; Validated	NA|149aa|down_2|CP032659.1_2710367_2710814_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|63aa|down_3|CP032659.1_2711685_2711874_+	NA	NA|509aa|down_4|CP032659.1_2711921_2713448_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|324aa|down_5|CP032659.1_2713447_2714419_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|444aa|down_6|CP032659.1_2714515_2715847_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|506aa|down_7|CP032659.1_2716836_2718354_+	PRK00047, glpK, glycerol kinase GlpK	NA|610aa|down_8|CP032659.1_2718368_2720198_+	NF033461, glycerol3P_ox_1, type 1 glycerol-3-phosphate oxidase	NA|241aa|down_9|CP032659.1_2720212_2720935_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
