assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003627255.1_ASM362725v1	CP032637	Lactobacillus paracasei strain ZFM54 chromosome, complete genome	1	50722-50828	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Orphan	GCTGGCCCAGAAACCTACACATAAGGACC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|56aa|up_8|CP032637.1_39542_39710_+,NA|141aa|up_3|CP032637.1_45412_45835_+,NA|125aa|up_2|CP032637.1_45974_46349_+,NA|101aa|down_6|CP032637.1_58693_58996_+	NA|704aa|up_9|CP032637.1_37395_39507_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|56aa|up_8|CP032637.1_39542_39710_+	NA	NA|556aa|up_7|CP032637.1_39924_41592_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|106aa|up_6|CP032637.1_41762_42080_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|379aa|up_5|CP032637.1_42188_43325_-	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|477aa|up_4|CP032637.1_43419_44850_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|141aa|up_3|CP032637.1_45412_45835_+	NA	NA|125aa|up_2|CP032637.1_45974_46349_+	NA	NA|415aa|up_1|CP032637.1_46509_47754_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|773aa|up_0|CP032637.1_48244_50563_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|489aa|down_0|CP032637.1_51026_52493_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|276aa|down_1|CP032637.1_52554_53382_+	TIGR03729, acc_ester, putative phosphoesterase	NA|659aa|down_2|CP032637.1_53709_55686_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|266aa|down_3|CP032637.1_55698_56496_+	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|382aa|down_4|CP032637.1_56602_57748_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|234aa|down_5|CP032637.1_57772_58474_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|101aa|down_6|CP032637.1_58693_58996_+	NA	NA|488aa|down_7|CP032637.1_59087_60551_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|276aa|down_8|CP032637.1_61750_62578_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|386aa|down_9|CP032637.1_62797_63955_+	pfam00144, Beta-lactamase, Beta-lactamase
GCA_003627255.1_ASM362725v1	CP032637	Lactobacillus paracasei strain ZFM54 chromosome, complete genome	2	72053-72173	2	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Orphan	GGTTTCTGGGGTGGCGAACGCGTTTAGAAACCG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|146aa|up_5|CP032637.1_67059_67497_+,NA|100aa|down_5|CP032637.1_76749_77049_-	NA|488aa|up_9|CP032637.1_59087_60551_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|276aa|up_8|CP032637.1_61750_62578_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|386aa|up_7|CP032637.1_62797_63955_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|887aa|up_6|CP032637.1_64262_66923_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|146aa|up_5|CP032637.1_67059_67497_+	NA	NA|332aa|up_4|CP032637.1_67982_68978_+	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|300aa|up_3|CP032637.1_68974_69874_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|250aa|up_2|CP032637.1_69866_70616_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|151aa|up_1|CP032637.1_70757_71210_+	PRK04351, PRK04351, SprT family protein	NA|155aa|up_0|CP032637.1_71202_71667_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|202aa|down_0|CP032637.1_72393_72999_+	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|380aa|down_1|CP032637.1_73077_74217_+	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|273aa|down_2|CP032637.1_74276_75095_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|188aa|down_3|CP032637.1_75207_75771_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|277aa|down_4|CP032637.1_75918_76749_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|100aa|down_5|CP032637.1_76749_77049_-	NA	NA|394aa|down_6|CP032637.1_77393_78575_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|427aa|down_7|CP032637.1_78586_79867_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|389aa|down_8|CP032637.1_79850_81017_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|585aa|down_9|CP032637.1_81340_83095_+	TIGR02720, Pyruvate_oxidase, pyruvate oxidase
GCA_003627255.1_ASM362725v1	CP032637	Lactobacillus paracasei strain ZFM54 chromosome, complete genome	3	1277947-1278055	3	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Orphan	CAGACCAGAAACCTACGTATAAGGACC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|346aa|up_4|CP032637.1_1270874_1271912_-,NA|379aa|up_3|CP032637.1_1271952_1273089_-,NA|219aa|up_2|CP032637.1_1273102_1273759_-,NA|576aa|down_3|CP032637.1_1280657_1282385_+,NA|120aa|down_7|CP032637.1_1286473_1286833_-,NA|39aa|down_9|CP032637.1_1288288_1288405_-	NA|239aa|up_9|CP032637.1_1263812_1264529_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|415aa|up_8|CP032637.1_1264815_1266060_-	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|594aa|up_7|CP032637.1_1266221_1268003_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|573aa|up_6|CP032637.1_1268007_1269726_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|228aa|up_5|CP032637.1_1270163_1270847_-	COG3863, COG3863, Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]	NA|346aa|up_4|CP032637.1_1270874_1271912_-	NA	NA|379aa|up_3|CP032637.1_1271952_1273089_-	NA	NA|219aa|up_2|CP032637.1_1273102_1273759_-	NA	NA|762aa|up_1|CP032637.1_1274687_1276973_+	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|291aa|up_0|CP032637.1_1276950_1277823_+	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|275aa|down_0|CP032637.1_1278204_1279029_+	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|183aa|down_1|CP032637.1_1279076_1279625_+	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|265aa|down_2|CP032637.1_1279876_1280671_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|576aa|down_3|CP032637.1_1280657_1282385_+	NA	NA|325aa|down_4|CP032637.1_1282552_1283527_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|674aa|down_5|CP032637.1_1283602_1285624_-	cd01951, lectin_L-type, legume lectins	NA|234aa|down_6|CP032637.1_1285788_1286490_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|120aa|down_7|CP032637.1_1286473_1286833_-	NA	NA|221aa|down_8|CP032637.1_1286984_1287647_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|39aa|down_9|CP032637.1_1288288_1288405_-	NA
GCA_003627255.1_ASM362725v1	CP032637	Lactobacillus paracasei strain ZFM54 chromosome, complete genome	4	1671151-1671295	4	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Orphan	TTTCGAAACGCGCAAACAGGCGCAGAAACCTGCTCATAAGGACCCC	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|47aa|up_5|CP032637.1_1666964_1667105_+,NA|111aa|up_4|CP032637.1_1667090_1667423_-,NA|68aa|down_2|CP032637.1_1674340_1674544_+,NA|115aa|down_8|CP032637.1_1679724_1680069_-	NA|247aa|up_9|CP032637.1_1662357_1663098_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|516aa|up_8|CP032637.1_1663257_1664805_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|313aa|up_7|CP032637.1_1665184_1666123_+	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|200aa|up_6|CP032637.1_1666200_1666800_+	TIGR02227, Inactive_signal_peptidase_IA	NA|47aa|up_5|CP032637.1_1666964_1667105_+	NA	NA|111aa|up_4|CP032637.1_1667090_1667423_-	NA	NA|248aa|up_3|CP032637.1_1667531_1668275_-	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|261aa|up_2|CP032637.1_1668293_1669076_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|253aa|up_1|CP032637.1_1669160_1669919_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|229aa|up_0|CP032637.1_1670363_1671050_+	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|460aa|down_0|CP032637.1_1671791_1673171_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|365aa|down_1|CP032637.1_1673321_1674416_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|68aa|down_2|CP032637.1_1674340_1674544_+	NA	NA|600aa|down_3|CP032637.1_1674544_1676344_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|294aa|down_4|CP032637.1_1676340_1677222_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|284aa|down_5|CP032637.1_1677218_1678070_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|266aa|down_6|CP032637.1_1678137_1678935_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|240aa|down_7|CP032637.1_1678931_1679651_-	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|115aa|down_8|CP032637.1_1679724_1680069_-	NA	NA|451aa|down_9|CP032637.1_1680315_1681668_-	TIGR00791, Gluconate_permease, gluconate transporter
GCA_003627255.1_ASM362725v1	CP032637	Lactobacillus paracasei strain ZFM54 chromosome, complete genome	5	2673923-2675146	1,5,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Type II-B,Type II-C,Type II-A	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	16,18,18,16	18	TypeII-B,TypeII-C,TypeII-A	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|108aa|up_7|CP032637.1_2664531_2664855_-,NA|389aa|up_5|CP032637.1_2665646_2666813_+,NA|265aa|up_4|CP032637.1_2666813_2667608_+,NA|367aa|down_0|CP032637.1_2675752_2676853_+,NA|70aa|down_8|CP032637.1_2686548_2686758_+	NA|581aa|up_9|CP032637.1_2661009_2662752_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|576aa|up_8|CP032637.1_2662732_2664460_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|108aa|up_7|CP032637.1_2664531_2664855_-	NA	NA|123aa|up_6|CP032637.1_2665048_2665417_-	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|389aa|up_5|CP032637.1_2665646_2666813_+	NA	NA|265aa|up_4|CP032637.1_2666813_2667608_+	NA	cas9|1363aa|up_3|CP032637.1_2667756_2671845_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|CP032637.1_2672035_2672941_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|CP032637.1_2672918_2673224_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|226aa|up_0|CP032637.1_2673220_2673898_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|367aa|down_0|CP032637.1_2675752_2676853_+	NA	NA|142aa|down_1|CP032637.1_2677003_2677429_+	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|564aa|down_2|CP032637.1_2677625_2679317_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|544aa|down_3|CP032637.1_2679313_2680945_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|286aa|down_4|CP032637.1_2681082_2681940_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|613aa|down_5|CP032637.1_2682391_2684230_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|483aa|down_6|CP032637.1_2684401_2685850_+	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|189aa|down_7|CP032637.1_2685976_2686543_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|70aa|down_8|CP032637.1_2686548_2686758_+	NA	NA|473aa|down_9|CP032637.1_2686709_2688128_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCA_003627255.1_ASM362725v1	CP032637	Lactobacillus paracasei strain ZFM54 chromosome, complete genome	6	2770915-2771004	6	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Orphan	AAAAACGGGCCCGTTTTGGGCCCGTTTT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|33aa|up_4|CP032637.1_2764330_2764429_-,NA|189aa|down_1|CP032637.1_2772584_2773151_+,NA|269aa|down_8|CP032637.1_2784134_2784941_+	NA|455aa|up_9|CP032637.1_2758470_2759835_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|272aa|up_8|CP032637.1_2760000_2760816_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|258aa|up_7|CP032637.1_2760970_2761744_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|394aa|up_6|CP032637.1_2761843_2763025_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|292aa|up_5|CP032637.1_2763105_2763981_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|33aa|up_4|CP032637.1_2764330_2764429_-	NA	NA|493aa|up_3|CP032637.1_2764577_2766056_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|334aa|up_2|CP032637.1_2766199_2767201_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|556aa|up_1|CP032637.1_2767275_2768943_+	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|654aa|up_0|CP032637.1_2768945_2770907_+	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|395aa|down_0|CP032637.1_2771150_2772335_-	COG3371, COG3371, Predicted membrane protein [Function unknown]	NA|189aa|down_1|CP032637.1_2772584_2773151_+	NA	NA|1017aa|down_2|CP032637.1_2773621_2776672_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|533aa|down_3|CP032637.1_2776689_2778288_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|428aa|down_4|CP032637.1_2778280_2779564_+	cd17264, RMtype1_S_Eco3763I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli O69:H11 07-3763 S subunit (S	NA|309aa|down_5|CP032637.1_2779722_2780649_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|398aa|down_6|CP032637.1_2780696_2781890_-	cd17278, RMtype1_S_LdeBORF1052P-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Lactobacillus delbrueckii subsp	NA|712aa|down_7|CP032637.1_2781951_2784087_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|269aa|down_8|CP032637.1_2784134_2784941_+	NA	NA|271aa|down_9|CP032637.1_2785943_2786756_+	cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like
