assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003627215.1_ASM362721v1	CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	1	233781-235970	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas5f,cas7f,cas6f,cas1,cas3f	DEDDh,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	Unclear	CTTCACTGCCGCATGGGCAGCTTAGAAA,CTTCACTGCCGCATGGGCAGCTTAGAAA,CTTCACTGCCGCATGGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	34,36,35	36	Unclear	WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	NA|146aa|up_9|CP032678.1_227203_227641_+,NA|89aa|up_8|CP032678.1_227654_227921_-,NA|119aa|up_7|CP032678.1_227933_228290_-,NA|152aa|up_6|CP032678.1_228303_228759_-,NA|83aa|up_5|CP032678.1_229088_229337_+,NA|129aa|up_4|CP032678.1_229645_230032_+,NA|212aa|down_2|CP032678.1_240022_240658_+,NA|130aa|down_3|CP032678.1_240770_241160_-,NA|104aa|down_4|CP032678.1_241201_241513_-,NA|115aa|down_5|CP032678.1_241557_241902_-,NA|88aa|down_6|CP032678.1_241971_242235_-,NA|155aa|down_8|CP032678.1_243181_243646_-,NA|89aa|down_9|CP032678.1_243688_243955_-	NA|146aa|up_9|CP032678.1_227203_227641_+	NA	NA|89aa|up_8|CP032678.1_227654_227921_-	NA	NA|119aa|up_7|CP032678.1_227933_228290_-	NA	NA|152aa|up_6|CP032678.1_228303_228759_-	NA	NA|83aa|up_5|CP032678.1_229088_229337_+	NA	NA|129aa|up_4|CP032678.1_229645_230032_+	NA	NA|343aa|up_3|CP032678.1_229995_231024_+	cd09675, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|301aa|up_2|CP032678.1_231033_231936_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|346aa|up_1|CP032678.1_231935_232973_+	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3	cas6f|200aa|up_0|CP032678.1_232982_233582_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas1|314aa|down_0|CP032678.1_236054_236996_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1001aa|down_1|CP032678.1_237017_240020_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|212aa|down_2|CP032678.1_240022_240658_+	NA	NA|130aa|down_3|CP032678.1_240770_241160_-	NA	NA|104aa|down_4|CP032678.1_241201_241513_-	NA	NA|115aa|down_5|CP032678.1_241557_241902_-	NA	NA|88aa|down_6|CP032678.1_241971_242235_-	NA	NA|191aa|down_7|CP032678.1_242470_243043_+	COG3355, COG3355, Predicted transcriptional regulator [Transcription]	NA|155aa|down_8|CP032678.1_243181_243646_-	NA	NA|89aa|down_9|CP032678.1_243688_243955_-	NA
GCA_003627215.1_ASM362721v1	CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	2	720135-720702	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	DEDDh,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	Unclear	CTTCACCGCCGCGCAGGCGGCTTAGAA,CTTCACCGCCGCGCAGGCGGCTTAGAAA,CTTCACCGCCGCGCAGGCGGCTTAGAAA	27,28,28	0	0	NA	NA	I-F:I-F:I-F	9,9,9	9	TypeV	WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	NA|360aa|up_8|CP032678.1_708963_710043_+,NA|165aa|up_7|CP032678.1_710033_710528_+,NA|157aa|up_6|CP032678.1_710547_711018_-,NA|214aa|up_4|CP032678.1_715295_715937_+,NA|413aa|up_3|CP032678.1_715933_717172_+,NA|158aa|down_0|CP032678.1_720807_721281_+,NA|201aa|down_1|CP032678.1_721329_721932_-,NA|208aa|down_2|CP032678.1_721959_722583_-,NA|720aa|down_3|CP032678.1_722607_724767_-,NA|198aa|down_4|CP032678.1_724864_725458_-,NA|140aa|down_5|CP032678.1_725474_725894_-,NA|83aa|down_6|CP032678.1_726024_726273_+,NA|192aa|down_7|CP032678.1_726452_727028_+,NA|205aa|down_8|CP032678.1_727191_727806_-,NA|168aa|down_9|CP032678.1_727954_728458_+	cas14j|356aa|up_9|CP032678.1_707806_708874_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|360aa|up_8|CP032678.1_708963_710043_+	NA	NA|165aa|up_7|CP032678.1_710033_710528_+	NA	NA|157aa|up_6|CP032678.1_710547_711018_-	NA	NA|1266aa|up_5|CP032678.1_711498_715296_+	pfam12128, DUF3584, Protein of unknown function (DUF3584)	NA|214aa|up_4|CP032678.1_715295_715937_+	NA	NA|413aa|up_3|CP032678.1_715933_717172_+	NA	NA|286aa|up_2|CP032678.1_717159_718017_+	cd00223, TOPRIM_TopoIIB_SPO, TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11	NA|361aa|up_1|CP032678.1_718082_719165_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|208aa|up_0|CP032678.1_719268_719892_-	pfam12694, MoCo_carrier, Putative molybdenum carrier	NA|158aa|down_0|CP032678.1_720807_721281_+	NA	NA|201aa|down_1|CP032678.1_721329_721932_-	NA	NA|208aa|down_2|CP032678.1_721959_722583_-	NA	NA|720aa|down_3|CP032678.1_722607_724767_-	NA	NA|198aa|down_4|CP032678.1_724864_725458_-	NA	NA|140aa|down_5|CP032678.1_725474_725894_-	NA	NA|83aa|down_6|CP032678.1_726024_726273_+	NA	NA|192aa|down_7|CP032678.1_726452_727028_+	NA	NA|205aa|down_8|CP032678.1_727191_727806_-	NA	NA|168aa|down_9|CP032678.1_727954_728458_+	NA
GCA_003627215.1_ASM362721v1	CP032677	Pseudomonas sp. Leaf58 chromosome, complete genome	1	1890723-1890840	1	CRISPRCasFinder	no		WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK	Orphan	GCAGTTCAAATCTGCCCAGACCTACCAAT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	NA|127aa|up_5|CP032677.1_1882744_1883125_+,NA|94aa|up_1|CP032677.1_1887041_1887323_-,NA	NA|317aa|up_9|CP032677.1_1879338_1880289_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|188aa|up_8|CP032677.1_1880372_1880936_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|183aa|up_7|CP032677.1_1881030_1881579_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|328aa|up_6|CP032677.1_1881661_1882645_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|127aa|up_5|CP032677.1_1882744_1883125_+	NA	NA|257aa|up_4|CP032677.1_1883103_1883874_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|373aa|up_3|CP032677.1_1883857_1884976_-	pfam11379, DUF3182, Protein of unknown function (DUF3182)	NA|603aa|up_2|CP032677.1_1885191_1887000_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|94aa|up_1|CP032677.1_1887041_1887323_-	NA	NA|296aa|up_0|CP032677.1_1887512_1888400_-	PRK10532, PRK10532, threonine and homoserine efflux system; Provisional	NA|603aa|down_0|CP032677.1_1894554_1896363_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|401aa|down_1|CP032677.1_1896369_1897572_-	cd17370, MFS_MJ1317_like, MJ1317 and similar transporters of the Major Facilitator Superfamily	NA|183aa|down_2|CP032677.1_1897830_1898379_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|262aa|down_3|CP032677.1_1898375_1899161_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|198aa|down_4|CP032677.1_1899309_1899903_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|379aa|down_5|CP032677.1_1900017_1901154_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|126aa|down_6|CP032677.1_1901166_1901544_+	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|355aa|down_7|CP032677.1_1901608_1902673_+	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|629aa|down_8|CP032677.1_1902784_1904671_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|293aa|down_9|CP032677.1_1904813_1905692_-	COG0583, LysR, Transcriptional regulator [Transcription]
GCA_003627215.1_ASM362721v1	CP032677	Pseudomonas sp. Leaf58 chromosome, complete genome	2	3496755-3496828	2	CRISPRCasFinder	no		WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK	Orphan	TTTACGTTTACGTAAAGGTGATGA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	NA,NA|109aa|down_6|CP032677.1_3504221_3504548_+	NA|690aa|up_9|CP032677.1_3477106_3479176_+	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|925aa|up_8|CP032677.1_3479172_3481947_+	PRK14511, PRK14511, malto-oligosyltrehalose synthase	NA|95aa|up_7|CP032677.1_3481961_3482246_+	pfam11154, DUF2934, Protein of unknown function (DUF2934)	NA|718aa|up_6|CP032677.1_3482382_3484536_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|265aa|up_5|CP032677.1_3484590_3485385_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|359aa|up_4|CP032677.1_3485704_3486781_+	pfam03797, Autotransporter, Autotransporter beta-domain	NA|737aa|up_3|CP032677.1_3486898_3489109_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|1107aa|up_2|CP032677.1_3489105_3492426_-	TIGR02456, Trehalose_synthase, trehalose synthase	NA|673aa|up_1|CP032677.1_3492565_3494584_-	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|561aa|up_0|CP032677.1_3495008_3496691_-	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|388aa|down_0|CP032677.1_3496900_3498064_+	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|536aa|down_1|CP032677.1_3498083_3499691_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|272aa|down_2|CP032677.1_3499694_3500510_+	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated	NA|651aa|down_3|CP032677.1_3500506_3502459_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|38aa|down_4|CP032677.1_3502990_3503104_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|219aa|down_5|CP032677.1_3503450_3504107_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|109aa|down_6|CP032677.1_3504221_3504548_+	NA	NA|172aa|down_7|CP032677.1_3504987_3505503_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|307aa|down_8|CP032677.1_3505542_3506463_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|250aa|down_9|CP032677.1_3506659_3507409_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG
GCA_003627215.1_ASM362721v1	CP032677	Pseudomonas sp. Leaf58 chromosome, complete genome	3	4114500-4114759	3	CRISPRCasFinder	no		WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK	Orphan	CCGTGACCGCCGCCGCCACTTCC	23	0	0	NA	NA	NA	5	5	Orphan	WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	NA|318aa|up_9|CP032677.1_4099901_4100855_+,NA|250aa|up_3|CP032677.1_4110618_4111368_-,NA|282aa|up_1|CP032677.1_4113128_4113974_-,NA|97aa|up_0|CP032677.1_4114170_4114461_-,NA|74aa|down_5|CP032677.1_4118937_4119159_+,NA|63aa|down_6|CP032677.1_4119207_4119396_+	NA|318aa|up_9|CP032677.1_4099901_4100855_+	NA	NA|355aa|up_8|CP032677.1_4100882_4101947_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|881aa|up_7|CP032677.1_4102920_4105563_+	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|431aa|up_6|CP032677.1_4105562_4106855_+	COG3946, VirJ, Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]	NA|637aa|up_5|CP032677.1_4107068_4108979_-	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|444aa|up_4|CP032677.1_4109214_4110546_+	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|250aa|up_3|CP032677.1_4110618_4111368_-	NA	NA|570aa|up_2|CP032677.1_4111422_4113132_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|282aa|up_1|CP032677.1_4113128_4113974_-	NA	NA|97aa|up_0|CP032677.1_4114170_4114461_-	NA	NA|151aa|down_0|CP032677.1_4115104_4115557_+	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|237aa|down_1|CP032677.1_4115634_4116345_+	cd02555, PSSA_1, Pseudouridine synthase, a subgroup of the RsuA family	NA|154aa|down_2|CP032677.1_4116394_4116856_+	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|down_3|CP032677.1_4116862_4117555_+	pfam01980, UPF0066, Uncharacterized protein family UPF0066	NA|441aa|down_4|CP032677.1_4117616_4118939_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|74aa|down_5|CP032677.1_4118937_4119159_+	NA	NA|63aa|down_6|CP032677.1_4119207_4119396_+	NA	NA|449aa|down_7|CP032677.1_4119339_4120686_-	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|226aa|down_8|CP032677.1_4120682_4121360_-	PRK10816, PRK10816, two-component system response regulator PhoP	NA|202aa|down_9|CP032677.1_4121448_4122054_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain
GCA_003627215.1_ASM362721v1	CP032677	Pseudomonas sp. Leaf58 chromosome, complete genome	4	5025657-5025742	4	CRISPRCasFinder	no		WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK	Orphan	GGGGCCCTGGTACAGGCAGGCCGGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,PrimPol,cas3,DinG,csa3,PD-DExK,cas5f,cas7f,cas6f,cas1,cas3f,c2c9_V-U4,cas14j	NA,NA|146aa|down_0|CP032677.1_5025754_5026192_-,NA|1559aa|down_9|CP032677.1_5033400_5038077_-	NA|85aa|up_9|CP032677.1_5011059_5011314_-	pfam04355, SmpA_OmlA, SmpA / OmlA family	NA|199aa|up_8|CP032677.1_5011538_5012135_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|337aa|up_7|CP032677.1_5012138_5013149_-	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|817aa|up_6|CP032677.1_5013388_5015839_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|135aa|up_5|CP032677.1_5016024_5016429_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|608aa|up_4|CP032677.1_5016529_5018353_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|485aa|up_3|CP032677.1_5018481_5019936_-	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional	NA|469aa|up_2|CP032677.1_5021163_5022570_+	PRK09469, glnA, glutamate--ammonia ligase	NA|362aa|up_1|CP032677.1_5022933_5024019_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|479aa|up_0|CP032677.1_5024015_5025452_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|146aa|down_0|CP032677.1_5025754_5026192_-	NA	NA|154aa|down_1|CP032677.1_5026190_5026652_+	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|162aa|down_2|CP032677.1_5026855_5027341_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|85aa|down_3|CP032677.1_5027379_5027634_-	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	NA|138aa|down_4|CP032677.1_5027635_5028049_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|512aa|down_5|CP032677.1_5028256_5029792_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_6|CP032677.1_5029920_5031225_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|439aa|down_7|CP032677.1_5031303_5032620_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|263aa|down_8|CP032677.1_5032628_5033417_+	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|1559aa|down_9|CP032677.1_5033400_5038077_-	NA
