The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032622	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000191 chromosome, complete genome	4723270	1743887	1753058	4723270	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYG12497.1|1743887_1744835_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
AYG12498.1|1744818_1745550_+	ABC transporter permease	NA	NA	NA	NA	NA
AYG12499.1|1745530_1745638_-	protein YohO	NA	NA	NA	NA	NA
AYG12500.1|1745697_1746429_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYG12501.1|1746651_1748337_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AYG12502.1|1748333_1749053_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYG12503.1|1749099_1749567_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYG12504.1|1749623_1750154_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AYG12505.1|1750325_1750784_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYG12506.1|1751024_1753058_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
CP032622	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000191 chromosome, complete genome	4723270	1919753	1930369	4723270		Morganella_phage(25.0%)	13	NA	NA
AYG12648.1|1919753_1920227_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	76.6	1.6e-38
AYG12649.1|1920873_1921164_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	49.1	3.0e-08
AYG12650.1|1921535_1922333_-	protein MtfA	NA	NA	NA	NA	NA
AYG12651.1|1922813_1922975_+	hypothetical protein	NA	NA	NA	NA	NA
AYG12652.1|1923101_1923521_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AYG12653.1|1923523_1924792_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
AYG12654.1|1925246_1925459_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AYG15315.1|1925469_1925658_+	cold-shock protein	NA	NA	NA	NA	NA
AYG12655.1|1925917_1927129_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.5	3.4e-109
AYG12656.1|1927140_1927341_-	hypothetical protein	NA	NA	NA	NA	NA
AYG12657.1|1927778_1928090_+	hypothetical protein	NA	NA	NA	NA	NA
AYG12658.1|1928169_1928865_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
AYG12659.1|1928938_1930369_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 3
CP032622	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000191 chromosome, complete genome	4723270	2840061	2926942	4723270	capsid,tRNA,lysis,head,terminase,tail,holin,portal,transposase,protease	Enterobacteria_phage(32.0%)	92	NA	NA
AYG13565.1|2840061_2840742_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.5	3.4e-82
AYG13566.1|2841360_2842020_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYG13567.1|2842106_2842436_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AYG13568.1|2842432_2842714_-	acylphosphatase	NA	NA	NA	NA	NA
AYG13569.1|2842762_2843542_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYG13570.1|2843567_2844116_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AYG13571.1|2844330_2845542_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
AYG13572.1|2845599_2845917_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
AYG13573.1|2845961_2846378_-	CoA-binding protein	NA	NA	NA	NA	NA
AYG13574.1|2846548_2847211_+	DUF2057 family protein	NA	NA	NA	NA	NA
AYG13575.1|2847305_2847764_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AYG13576.1|2847799_2849854_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.3	3.2e-19
AYG13577.1|2849977_2850424_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AYG13578.1|2850442_2852596_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AYG13579.1|2852582_2853188_-	DNA transformation protein	NA	NA	NA	NA	NA
AYG13580.1|2853404_2853914_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AYG13581.1|2854270_2855323_+	porin OmpA	NA	NA	NA	NA	NA
AYG13582.1|2855394_2855847_-	macrodomain Ter protein	NA	NA	NA	NA	NA
AYG13583.1|2856032_2857793_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AYG13584.1|2857861_2858380_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AYG13585.1|2858479_2858647_-	ribosome modulation factor	NA	NA	NA	NA	NA
AYG13586.1|2858902_2859466_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
AYG13587.1|2859462_2861103_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
AYG13588.1|2861107_2862361_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
AYG13589.1|2862375_2864283_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
AYG13590.1|2864295_2866404_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
AYG13591.1|2866502_2867612_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYG13592.1|2867608_2868151_-	cell division protein ZapC	NA	NA	NA	NA	NA
AYG13593.1|2868316_2869327_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AYG13594.1|2869534_2872147_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	2.2e-20
AYG13595.1|2872573_2872780_+	DinI family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
AYG13596.1|2873255_2874056_+	hypothetical protein	NA	NA	NA	NA	NA
AYG13597.1|2874623_2876114_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.6	1.6e-254
AYG13598.1|2876943_2877525_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.3e-94
AYG13599.1|2877524_2880020_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	76.1	7.3e-159
AYG13600.1|2880073_2880316_-	hypothetical protein	NA	NA	NA	NA	NA
AYG13601.1|2880354_2883717_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.5	0.0e+00
AYG13602.1|2883778_2884426_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	1.6e-89
AYG13603.1|2884323_2885061_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.2	9.8e-128
AYG13604.1|2885067_2885766_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.6e-103
AYG13605.1|2885775_2886105_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
AYG13606.1|2886107_2889203_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.7	4.8e-277
AYG13607.1|2889174_2889513_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
AYG13608.1|2889509_2889905_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
AYG13609.1|2889955_2890702_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
AYG13610.1|2890709_2891111_-|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
AYG13611.1|2891107_2891686_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
AYG13612.1|2891794_2892925_+|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	98.1	4.0e-213
AYG13613.1|2892957_2893341_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.2e-28
AYG13614.1|2893351_2893711_-	DNA packaging protein	NA	NA	NA	NA	NA
AYG13615.1|2893768_2894797_-|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
AYG13616.1|2894851_2895199_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
AYG13617.1|2895211_2896708_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.9	3.3e-98
AYG13618.1|2896697_2898278_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	1.2e-188
AYG13619.1|2898274_2898478_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	70.8	2.1e-16
AYG13620.1|2898461_2900393_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.4	2.0e-257
AYG13621.1|2900364_2900910_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
AYG13622.1|2901195_2901597_+	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
AYG15361.1|2901832_2902285_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
AYG13623.1|2902302_2902755_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	5.1e-79
AYG15362.1|2902738_2903068_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
AYG13624.1|2903343_2904030_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM2	Phage_Gifsy-1	98.7	5.1e-131
AYG13625.1|2904390_2904840_+	lipoprotein	NA	NA	NA	NA	NA
AYG13626.1|2904975_2905101_-	hypothetical protein	NA	NA	NA	NA	NA
AYG13627.1|2905499_2906297_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYG13628.1|2906286_2906433_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
AYG13629.1|2906429_2906657_-	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	76.8	6.6e-19
AYG13630.1|2906653_2907253_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	6.1e-96
AYG13631.1|2907316_2907565_-	hypothetical protein	NA	NA	NA	NA	NA
AYG13632.1|2907841_2908333_-	DUF1076 domain-containing protein	NA	B6DZB9	Enterobacteria_phage	51.5	9.7e-23
AYG13633.1|2908236_2908440_-	hypothetical protein	NA	NA	NA	NA	NA
AYG13634.1|2908762_2909158_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	39.3	2.0e-18
AYG13635.1|2909175_2909928_-	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	77.0	1.7e-103
AYG13636.1|2909934_2910141_-	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.0	5.3e-15
AYG13637.1|2910188_2910425_+	hypothetical protein	NA	NA	NA	NA	NA
AYG13638.1|2910848_2911343_-	hypothetical protein	NA	NA	NA	NA	NA
AYG13639.1|2911329_2911584_-	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
AYG13640.1|2911680_2912106_+	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
AYG13641.1|2912416_2912605_+	hypothetical protein	NA	NA	NA	NA	NA
AYG13642.1|2912549_2912729_-	hypothetical protein	NA	NA	NA	NA	NA
AYG13643.1|2913159_2913444_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
AYG13644.1|2913518_2913854_+	hypothetical protein	NA	NA	NA	NA	NA
AYG13645.1|2913983_2917163_+	DNA breaking-rejoining protein	NA	H6WRX1	Salmonella_phage	68.2	0.0e+00
AYG13646.1|2917125_2918283_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	98.7	6.7e-216
AYG13647.1|2918325_2918565_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AYG13648.1|2918605_2918854_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYG13649.1|2918898_2920191_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.5	1.3e-252
AYG13650.1|2920385_2921588_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AYG13651.1|2921668_2923102_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AYG13652.1|2923347_2924562_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
AYG13653.1|2924879_2925341_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYG13654.1|2925541_2926942_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
>prophage 4
CP032622	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000191 chromosome, complete genome	4723270	4074063	4084737	4723270		Enterobacteria_phage(55.56%)	13	NA	NA
AYG14679.1|4074063_4076397_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.3	0.0e+00
AYG14680.1|4076411_4076732_-	hypothetical protein	NA	NA	NA	NA	NA
AYG14681.1|4076728_4076956_-	hypothetical protein	NA	NA	NA	NA	NA
AYG14682.1|4076952_4077504_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	71.3	1.1e-35
AYG14683.1|4078304_4079042_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	65.7	3.1e-81
AYG14684.1|4079038_4079284_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	77.8	1.6e-31
AYG14685.1|4079300_4079867_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	2.6e-56
AYG14686.1|4079830_4080016_-	hypothetical protein	NA	NA	NA	NA	NA
AYG14687.1|4080086_4080650_-	restriction endonuclease	NA	A0A1B0UXL9	Roseobacter_phage	42.9	5.5e-30
AYG14688.1|4080646_4080883_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYG14689.1|4080938_4081934_+	site-specific DNA-methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	3.5e-19
AYG14690.1|4081987_4083247_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	41.2	3.7e-74
AYG14691.1|4083717_4084737_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	1.7e-42
