assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	1	547290-549942	1	CRT	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GNCGCCGNNGCCGCCGNNGCCGCCG	25	3	49	547312-547334|547405-547427|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529|547507-547529	CP025546.1_560213-560235|CP025546.1_4415967-4415945|CP025546.1_562820-562842|CP025546.1_2157358-2157336|CP025546.1_4032496-4032474|CP025546.1_4384620-4384642|CP025546.1_6657110-6657088|CP025546.1_547123-547145|CP025546.1_550669-550691|CP025546.1_550951-550973|CP025546.1_551632-551654|CP025546.1_554036-554058|CP025546.1_561581-561603|CP025546.1_566011-566033|CP025546.1_587294-587316|CP025546.1_773961-773983|CP025546.1_896708-896730|CP025546.1_912476-912498|CP025546.1_1368604-1368626|CP025546.1_1767873-1767895|CP025546.1_1768332-1768354|CP025546.1_2155924-2155902|CP025546.1_2156977-2156955|CP025546.1_2157718-2157696|CP025546.1_2160781-2160759|CP025546.1_2160865-2160843|CP025546.1_2162329-2162307|CP025546.1_2162839-2162817|CP025546.1_2571849-2571827|CP025546.1_2976277-2976299|CP025546.1_3007539-3007517|CP025546.1_3105717-3105739|CP025546.1_3107006-3107028|CP025546.1_3966863-3966885|CP025546.1_4033051-4033029|CP025546.1_4415244-4415222|CP025546.1_4415457-4415435|CP025546.1_4416399-4416377|CP025546.1_4418048-4418026|CP025546.1_5336408-5336386|CP025546.1_5639460-5639482|CP025546.1_5653247-5653225|CP025546.1_5937667-5937689|CP025546.1_6311326-6311304|CP025546.1_6311641-6311619|CP025546.1_6652172-6652150|CP025546.1_6652961-6652939|CP025546.1_6654254-6654232|CP025548.1_24991-25013	NA	31	31	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|312aa|up_7|CP025546.1_531799_532735_+,NA|176aa|down_7|CP025546.1_572981_573509_+	NA|235aa|up_9|CP025546.1_530141_530846_-	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|254aa|up_8|CP025546.1_530928_531690_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|312aa|up_7|CP025546.1_531799_532735_+	NA	NA|610aa|up_6|CP025546.1_534385_536215_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|407aa|up_5|CP025546.1_537829_539050_+	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|508aa|up_4|CP025546.1_539066_540590_+	PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated	NA|311aa|up_3|CP025546.1_540598_541531_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|127aa|up_2|CP025546.1_541524_541905_-	pfam04505, CD225, Interferon-induced transmembrane protein	NA|387aa|up_1|CP025546.1_542014_543175_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|339aa|up_0|CP025546.1_543306_544323_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|167aa|down_0|CP025546.1_550494_550995_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|912aa|down_1|CP025546.1_564512_567248_-	pfam00934, PE, PE family	NA|377aa|down_2|CP025546.1_567539_568670_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|438aa|down_3|CP025546.1_568663_569977_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|308aa|down_4|CP025546.1_569961_570885_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|219aa|down_5|CP025546.1_571097_571754_+	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	NA|410aa|down_6|CP025546.1_571750_572980_+	cd00321, SO_family_Moco, Sulfite oxidase (SO) family, molybdopterin binding domain	NA|176aa|down_7|CP025546.1_572981_573509_+	NA	NA|400aa|down_8|CP025546.1_573549_574749_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|470aa|down_9|CP025546.1_574792_576202_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	5	1365251-1365333	3	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GCCGGGCGCTGCGGGTCGCCGCCGTCG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|201aa|up_8|CP025546.1_1355855_1356458_-,NA|210aa|up_7|CP025546.1_1356595_1357225_+,NA|569aa|down_8|CP025546.1_1380981_1382688_+	NA|309aa|up_9|CP025546.1_1354925_1355852_+	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|201aa|up_8|CP025546.1_1355855_1356458_-	NA	NA|210aa|up_7|CP025546.1_1356595_1357225_+	NA	NA|527aa|up_6|CP025546.1_1357224_1358805_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|116aa|up_5|CP025546.1_1358980_1359328_-	pfam02467, Whib, Transcription factor WhiB	NA|312aa|up_4|CP025546.1_1359644_1360580_-	cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases	NA|288aa|up_3|CP025546.1_1360594_1361458_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|673aa|up_2|CP025546.1_1361458_1363477_-	PRK07201, PRK07201, SDR family oxidoreductase	NA|237aa|up_1|CP025546.1_1363532_1364243_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|290aa|up_0|CP025546.1_1364337_1365207_+	PLN02864, PLN02864, enoyl-CoA hydratase	NA|460aa|down_0|CP025546.1_1365336_1366716_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|373aa|down_1|CP025546.1_1370874_1371993_-	TIGR00685, Trehalose-6-phosphate_phosphatase, trehalose-phosphatase	NA|385aa|down_2|CP025546.1_1372029_1373184_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|1098aa|down_3|CP025546.1_1373513_1376807_+	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|137aa|down_4|CP025546.1_1376887_1377298_-	TIGR03667, Rv3369, PPOX class probable F420-dependent enzyme, Rv3369 family	NA|213aa|down_5|CP025546.1_1377321_1377960_+	cd02062, Nitro_FMN_reductase, nitroreductase family protein	NA|594aa|down_6|CP025546.1_1378370_1380152_-	pfam00934, PE, PE family	NA|155aa|down_7|CP025546.1_1380361_1380826_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|569aa|down_8|CP025546.1_1380981_1382688_+	NA	NA|873aa|down_9|CP025546.1_1382914_1385533_+	cd00075, HATPase, Histidine kinase-like ATPase domain
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	6	1508020-1508100	4	CRISPRCasFinder	no	cas3	WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Unclear	CGCTCGCTCCGCTCGCTCGACTCACAG	27	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|130aa|up_9|CP025546.1_1500244_1500634_+,NA|104aa|up_8|CP025546.1_1500762_1501074_+,NA	NA|130aa|up_9|CP025546.1_1500244_1500634_+	NA	NA|104aa|up_8|CP025546.1_1500762_1501074_+	NA	NA|146aa|up_7|CP025546.1_1501444_1501882_+	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|263aa|up_6|CP025546.1_1501889_1502678_+	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|127aa|up_5|CP025546.1_1502648_1503029_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|598aa|up_4|CP025546.1_1503311_1505105_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|140aa|up_3|CP025546.1_1505232_1505652_-	pfam02657, SufE, Fe-S metabolism associated domain	NA|298aa|up_2|CP025546.1_1505656_1506550_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|167aa|up_1|CP025546.1_1506564_1507065_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|217aa|up_0|CP025546.1_1507076_1507727_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|547aa|down_0|CP025546.1_1508103_1509744_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|522aa|down_1|CP025546.1_1509808_1511374_+	PRK12837, PRK12837, FAD-binding protein	NA|269aa|down_2|CP025546.1_1511370_1512177_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|173aa|down_3|CP025546.1_1512188_1512707_+	pfam03703, bPH_2, Bacterial PH domain	NA|226aa|down_4|CP025546.1_1512661_1513339_-	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|431aa|down_5|CP025546.1_1513378_1514671_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|175aa|down_6|CP025546.1_1514663_1515188_+	pfam00731, AIRC, AIR carboxylase	NA|390aa|down_7|CP025546.1_1515208_1516378_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|397aa|down_8|CP025546.1_1516632_1517823_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|512aa|down_9|CP025546.1_1517897_1519433_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	8	2123127-2123206	5	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GCCGCGCTCGCGATCACCACTAGGA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|67aa|up_8|CP025546.1_2112389_2112590_-,NA	NA|223aa|up_9|CP025546.1_2111545_2112214_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|67aa|up_8|CP025546.1_2112389_2112590_-	NA	NA|135aa|up_7|CP025546.1_2112774_2113179_+	pfam05423, Mycobact_memb, Mycobacterium membrane protein	NA|964aa|up_6|CP025546.1_2113175_2116067_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|616aa|up_5|CP025546.1_2116063_2117911_-	cd01948, EAL, EAL domain	NA|219aa|up_4|CP025546.1_2118122_2118779_-	cd04887, ACT_MalLac-Enz, ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains	NA|100aa|up_3|CP025546.1_2118924_2119224_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|495aa|up_2|CP025546.1_2119220_2120705_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|344aa|up_1|CP025546.1_2120803_2121835_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|382aa|up_0|CP025546.1_2121912_2123058_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|503aa|down_0|CP025546.1_2123215_2124724_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|166aa|down_1|CP025546.1_2124714_2125212_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|178aa|down_2|CP025546.1_2125404_2125938_+	pfam01613, Flavin_Reduct, Flavin reductase like domain	NA|374aa|down_3|CP025546.1_2126074_2127196_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|281aa|down_4|CP025546.1_2127718_2128561_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|113aa|down_5|CP025546.1_2128637_2128976_-	pfam10756, bPH_6, Bacterial PH domain	NA|627aa|down_6|CP025546.1_2129324_2131205_+	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated	NA|172aa|down_7|CP025546.1_2131255_2131771_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|334aa|down_8|CP025546.1_2131828_2132830_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|200aa|down_9|CP025546.1_2133006_2133606_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	10	3586749-3586834	7	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	CACCATTTCGGTGCGCATCGTCATCGGGCT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA,NA|96aa|down_5|CP025546.1_3591985_3592273_-	NA|335aa|up_9|CP025546.1_3562018_3563023_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|135aa|up_8|CP025546.1_3563053_3563458_-	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	csa3|109aa|up_7|CP025546.1_3563454_3563781_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|424aa|up_6|CP025546.1_3563870_3565142_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|235aa|up_5|CP025546.1_3565141_3565846_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|125aa|up_4|CP025546.1_3565856_3566231_-	pfam10882, bPH_5, Bacterial PH domain	NA|763aa|up_3|CP025546.1_3566503_3568792_+	PLN02892, PLN02892, isocitrate lyase	NA|1266aa|up_2|CP025546.1_3568869_3572667_-	pfam00823, PPE, PPE family	NA|2197aa|up_1|CP025546.1_3573508_3580099_+	pfam00934, PE, PE family	NA|1614aa|up_0|CP025546.1_3580635_3585477_-	pfam00823, PPE, PPE family	NA|388aa|down_0|CP025546.1_3586869_3588033_+	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|156aa|down_1|CP025546.1_3588059_3588527_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|287aa|down_2|CP025546.1_3588626_3589487_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|378aa|down_3|CP025546.1_3589491_3590625_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|426aa|down_4|CP025546.1_3590692_3591970_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|96aa|down_5|CP025546.1_3591985_3592273_-	NA	NA|235aa|down_6|CP025546.1_3592357_3593062_-	TIGR03887, Thiocyanate_hydrolase_subunit_gamma, thiocyanate hydrolase, gamma subunit	NA|280aa|down_7|CP025546.1_3593080_3593920_-	pfam02211, NHase_beta, Nitrile hydratase beta subunit	NA|609aa|down_8|CP025546.1_3594138_3595965_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|272aa|down_9|CP025546.1_3595997_3596813_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	11	3881413-3881546	8	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	TCGACTTTAGGCCCGGTGACGATGCGCCCCGCGCAGCGGGGCG	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA,NA|118aa|down_5|CP025546.1_3885594_3885948_-,NA|337aa|down_6|CP025546.1_3886031_3887042_+,NA|69aa|down_7|CP025546.1_3887095_3887302_+	NA|161aa|up_9|CP025546.1_3868390_3868873_-	COG3918, COG3918, Predicted membrane protein [Function unknown]	NA|282aa|up_8|CP025546.1_3868978_3869824_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|94aa|up_7|CP025546.1_3869826_3870108_-	cd11547, NTP-PPase_HisE, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|314aa|up_6|CP025546.1_3870144_3871086_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|1254aa|up_5|CP025546.1_3871126_3874888_-	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|284aa|up_4|CP025546.1_3875294_3876146_+	pfam09754, PAC2, PAC2 family	NA|366aa|up_3|CP025546.1_3876870_3877968_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|405aa|up_2|CP025546.1_3878047_3879262_-	PRK07588, PRK07588, FAD-binding domain	NA|293aa|up_1|CP025546.1_3879270_3880149_-	PRK05872, PRK05872, short chain dehydrogenase; Provisional	NA|412aa|up_0|CP025546.1_3880173_3881409_-	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional	NA|274aa|down_0|CP025546.1_3881625_3882447_-	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]	NA|272aa|down_1|CP025546.1_3882478_3883294_-	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|196aa|down_2|CP025546.1_3883277_3883865_-	TIGR03847, TIGR03847, conserved hypothetical protein	NA|234aa|down_3|CP025546.1_3883997_3884699_-	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family	NA|277aa|down_4|CP025546.1_3884695_3885526_-	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed	NA|118aa|down_5|CP025546.1_3885594_3885948_-	NA	NA|337aa|down_6|CP025546.1_3886031_3887042_+	NA	NA|69aa|down_7|CP025546.1_3887095_3887302_+	NA	NA|362aa|down_8|CP025546.1_3887307_3888393_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|1232aa|down_9|CP025546.1_3888413_3892109_-	pfam00934, PE, PE family
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	18	5575545-5575639	14	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	CACCCACATTGCAGCCAGGGCTG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|565aa|up_9|CP025546.1_5562196_5563891_-,NA|181aa|down_7|CP025546.1_5581808_5582351_+	NA|565aa|up_9|CP025546.1_5562196_5563891_-	NA	NA|621aa|up_8|CP025546.1_5563903_5565766_-	cd01948, EAL, EAL domain	NA|265aa|up_7|CP025546.1_5566049_5566844_+	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|399aa|up_6|CP025546.1_5566952_5568149_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_5|CP025546.1_5568145_5569051_+	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|421aa|up_4|CP025546.1_5569095_5570358_+	PRK05877, PRK05877, aminodeoxychorismate synthase component I; Provisional	NA|458aa|up_3|CP025546.1_5570506_5571880_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|288aa|up_2|CP025546.1_5571904_5572768_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|531aa|up_1|CP025546.1_5572792_5574385_+	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]	NA|282aa|up_0|CP025546.1_5574633_5575479_-	pfam18741, MTES_1575, REase_MTES_1575	NA|403aa|down_0|CP025546.1_5575697_5576906_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|210aa|down_1|CP025546.1_5576966_5577596_+	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]	NA|220aa|down_2|CP025546.1_5577592_5578252_-	pfam18702, DUF5642, Domain of unknown function (DUF5642)	NA|226aa|down_3|CP025546.1_5578279_5578957_-	pfam18702, DUF5642, Domain of unknown function (DUF5642)	NA|332aa|down_4|CP025546.1_5578994_5579990_-	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|249aa|down_5|CP025546.1_5580135_5580882_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|265aa|down_6|CP025546.1_5580938_5581733_-	pfam14023, DUF4239, Protein of unknown function (DUF4239)	NA|181aa|down_7|CP025546.1_5581808_5582351_+	NA	NA|648aa|down_8|CP025546.1_5582342_5584286_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|319aa|down_9|CP025546.1_5584333_5585290_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	20	6139157-6141509	5	CRT	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GGCGGCNCNGGCGGCNCCGNCG	22	2	34	6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6139176-6139276|6141252-6141277|6141252-6141277	CP025546.1_6135396-6135496|CP025546.1_6132940-6133040|CP025546.1_6136908-6137008|CP025546.1_6137097-6137197|CP025546.1_6129164-6129264|CP025546.1_6129541-6129641|CP025546.1_6129730-6129830|CP025546.1_6129919-6130019|CP025546.1_6130108-6130208|CP025546.1_6130297-6130397|CP025546.1_6130486-6130586|CP025546.1_6130675-6130775|CP025546.1_6130864-6130964|CP025546.1_6131053-6131153|CP025546.1_6131430-6131530|CP025546.1_6131619-6131719|CP025546.1_6131996-6132096|CP025546.1_6132185-6132285|CP025546.1_6132374-6132474|CP025546.1_6132751-6132851|CP025546.1_6133129-6133229|CP025546.1_6133318-6133418|CP025546.1_6133885-6133985|CP025546.1_6134074-6134174|CP025546.1_6134263-6134363|CP025546.1_6134452-6134552|CP025546.1_6134829-6134929|CP025546.1_6135207-6135307|CP025546.1_6135585-6135685|CP025546.1_6136152-6136252|CP025546.1_6136341-6136441|CP025546.1_6136719-6136819|CP025546.1_3888838-3888813|CP025546.1_5121373-5121398	NA	27	27	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA,NA	NA|454aa|up_9|CP025546.1_6108810_6110172_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|306aa|up_8|CP025546.1_6110363_6111281_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|CP025546.1_6111297_6111489_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|394aa|up_6|CP025546.1_6111706_6112888_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|362aa|up_5|CP025546.1_6112913_6113999_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|492aa|up_4|CP025546.1_6114022_6115498_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|516aa|up_3|CP025546.1_6115504_6117052_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|277aa|up_2|CP025546.1_6117048_6117879_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|256aa|up_1|CP025546.1_6118083_6118851_-	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1181aa|up_0|CP025546.1_6119606_6123149_+	pfam00934, PE, PE family	NA|280aa|down_0|CP025546.1_6141821_6142661_+	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|281aa|down_1|CP025546.1_6142680_6143523_+	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|260aa|down_2|CP025546.1_6143556_6144336_-	pfam05711, TylF, Macrocin-O-methyltransferase (TylF)	NA|383aa|down_3|CP025546.1_6144339_6145488_-	pfam17843, MycE_N, MycE methyltransferase N-terminal	NA|244aa|down_4|CP025546.1_6145638_6146370_+	pfam13578, Methyltransf_24, Methyltransferase domain	NA|619aa|down_5|CP025546.1_6146492_6148349_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|789aa|down_6|CP025546.1_6148460_6150827_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|292aa|down_7|CP025546.1_6151065_6151941_+	pfam05050, Methyltransf_21, Methyltransferase FkbM domain	NA|584aa|down_8|CP025546.1_6153912_6155664_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|582aa|down_9|CP025546.1_6156742_6158488_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide
GCA_003614435.1_ASM361443v1	CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	21	6613410-6613514	15	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	CCCGGCCTGGCCAGCCCGGGCCTC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|664aa|up_4|CP025546.1_6606355_6608347_-,NA|211aa|down_1|CP025546.1_6617932_6618565_-	NA|1780aa|up_9|CP025546.1_6595104_6600444_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|630aa|up_8|CP025546.1_6600464_6602354_-	PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated	NA|338aa|up_7|CP025546.1_6602654_6603668_-	pfam01083, Cutinase, Cutinase	NA|302aa|up_6|CP025546.1_6603844_6604750_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|348aa|up_5|CP025546.1_6604918_6605962_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|664aa|up_4|CP025546.1_6606355_6608347_-	NA	NA|317aa|up_3|CP025546.1_6608321_6609272_-	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase	NA|180aa|up_2|CP025546.1_6609268_6609808_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|634aa|up_1|CP025546.1_6609800_6611702_-	pfam17994, Glft2_N, Galactofuranosyltransferase 2 N-terminal	NA|406aa|up_0|CP025546.1_6611698_6612916_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|542aa|down_0|CP025546.1_6614383_6616009_+	COG5479, COG5479, Uncharacterized protein potentially involved in peptidoglycan biosynthesis [Cell envelope biogenesis, outer membrane]	NA|211aa|down_1|CP025546.1_6617932_6618565_-	NA	NA|339aa|down_2|CP025546.1_6618612_6619629_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|438aa|down_3|CP025546.1_6619701_6621015_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|487aa|down_4|CP025546.1_6621131_6622592_+	pfam00934, PE, PE family	NA|153aa|down_5|CP025546.1_6622746_6623205_-	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|389aa|down_6|CP025546.1_6623232_6624399_-	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp	NA|176aa|down_7|CP025546.1_6624395_6624923_-	pfam13892, DBINO, DNA-binding domain	NA|283aa|down_8|CP025546.1_6625185_6626034_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|268aa|down_9|CP025546.1_6626057_6626861_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like
