The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	6730319	1644104	1676902	6730319	transposase,protease,integrase	Mycobacterium_phage(14.29%)	30	1656555:1656598	1675621:1675664
AYE94667.1|1644104_1645499_-|protease	zinc-dependent metalloprotease	protease	NA	NA	NA	NA
AYE94668.1|1645577_1646600_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AYE94669.1|1646669_1649651_+	membrane protein	NA	NA	NA	NA	NA
AYE94670.1|1649775_1650723_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYE94671.1|1650827_1651478_+	diguanylate cyclase	NA	NA	NA	NA	NA
AYE94672.1|1651477_1652149_+	nitroreductase	NA	NA	NA	NA	NA
AYE94673.1|1652099_1652669_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
AYE94674.1|1652635_1653085_+	hydrogenase	NA	NA	NA	NA	NA
AYE98656.1|1653087_1653678_+	phenolic acid decarboxylase subunit B	NA	NA	NA	NA	NA
AYE94675.1|1653649_1655188_+	UbiD family decarboxylase	NA	NA	NA	NA	NA
AYE94676.1|1655165_1656371_-	RNA-splicing ligase RtcB	NA	R4TNH6	Mycobacterium_phage	70.4	3.5e-167
1656555:1656598	attL	GCTCATAACCCAGAGGTCGCAGGTTCGAATCCTGTCCCCGCTAC	NA	NA	NA	NA
AYE94677.1|1656829_1657768_-	hypothetical protein	NA	NA	NA	NA	NA
AYE94678.1|1658053_1658830_-	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	31.0	6.4e-21
AYE94679.1|1658874_1659351_-	hypothetical protein	NA	NA	NA	NA	NA
AYE94680.1|1659555_1659885_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE98657.1|1659881_1660217_-	hypothetical protein	NA	NA	NA	NA	NA
AYE94681.1|1660281_1661610_-|integrase	site-specific integrase	integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	26.6	5.3e-39
AYE94682.1|1661606_1661795_-	hypothetical protein	NA	NA	NA	NA	NA
AYE94683.1|1662150_1663386_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AYE94684.1|1663385_1664183_+|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	44.5	5.0e-53
AYE94685.1|1664193_1664826_-	hypothetical protein	NA	NA	NA	NA	NA
AYE94686.1|1665172_1665430_-	hypothetical protein	NA	NA	NA	NA	NA
AYE94687.1|1668290_1668533_+	hypothetical protein	NA	NA	NA	NA	NA
AYE94688.1|1668529_1669771_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AYE94689.1|1669920_1670778_+	hypothetical protein	NA	NA	NA	NA	NA
AYE94690.1|1670774_1671197_+	PIN domain nuclease	NA	NA	NA	NA	NA
AYE94691.1|1671214_1672735_+	DNA methyltransferase	NA	A0A1V0SLK8	Klosneuvirus	27.0	6.3e-20
AYE94692.1|1672782_1673244_-	hypothetical protein	NA	NA	NA	NA	NA
AYE94693.1|1673407_1674668_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	54.0	1.0e-68
AYE94694.1|1675711_1676902_-|transposase	IS481 family transposase	transposase	S5WIU1	Leptospira_phage	27.3	4.0e-06
1675621:1675664	attR	GCTCATAACCCAGAGGTCGCAGGTTCGAATCCTGTCCCCGCTAC	NA	NA	NA	NA
>prophage 2
CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	6730319	2592754	2601989	6730319		uncultured_Mediterranean_phage(33.33%)	8	NA	NA
AYE95434.1|2592754_2594074_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	27.8	4.2e-20
AYE95435.1|2594079_2595729_+	hypothetical protein	NA	NA	NA	NA	NA
AYE95436.1|2595754_2596261_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	33.3	3.8e-14
AYE95437.1|2596287_2596746_+	hypothetical protein	NA	NA	NA	NA	NA
AYE95438.1|2596790_2599151_+	RelA/SpoT family protein	NA	A0A291L9W9	Bordetella_phage	34.4	1.1e-07
AYE95439.1|2599167_2600325_-	serine/threonine protein kinase	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	33.5	7.1e-16
AYE95440.1|2600368_2601271_-	peptidylprolyl isomerase	NA	A0A1V0SCU1	Indivirus	31.0	5.2e-06
AYE95441.1|2601314_2601989_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	28.7	1.1e-16
>prophage 3
CP025546	Mycobacterium paragordonae strain 49061 chromosome, complete genome	6730319	6044905	6110172	6730319	capsid,transposase,head,protease,integrase	Bacillus_phage(25.0%)	57	6072550:6072568	6125856:6125874
AYE97900.1|6044905_6045871_-|protease	cysteine protease	protease	M1PBX1	Moumouvirus	29.0	4.7e-05
AYE99175.1|6045864_6046275_+	HIT family protein	NA	NA	NA	NA	NA
AYE97901.1|6046364_6047798_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	30.9	7.4e-23
AYE97902.1|6047799_6048528_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	8.1e-34
AYE97903.1|6048683_6049415_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97904.1|6049598_6050759_-|integrase	integrase	integrase	A0A1D8EX55	Mycobacterium_phage	53.9	5.9e-103
AYE97905.1|6050751_6051309_-	hypothetical protein	NA	NA	NA	NA	NA
AYE97906.1|6051369_6051561_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97907.1|6051895_6052165_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97908.1|6052326_6052557_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97909.1|6052553_6052901_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97910.1|6052897_6054589_+	hypothetical protein	NA	A0A142KC72	Gordonia_phage	31.1	8.5e-34
AYE97911.1|6055606_6056134_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0K1LME7	Bacillus_phage	32.7	2.2e-09
AYE97912.1|6056140_6057601_+|capsid	phage major capsid protein	capsid	A0A1B3B249	Gordonia_phage	37.7	4.0e-64
AYE97913.1|6057932_6058946_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97914.1|6059195_6062390_+	cyclase	NA	NA	NA	NA	NA
AYE97915.1|6062484_6064482_+	PE-PGRS family protein	NA	NA	NA	NA	NA
AYE97916.1|6064619_6065861_-	hypothetical protein	NA	NA	NA	NA	NA
AYE97917.1|6065944_6066598_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE97918.1|6066702_6067368_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97919.1|6067364_6068171_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AYE99176.1|6068270_6069245_+	alpha/beta hydrolase	NA	R4JP33	Mycobacterium_phage	26.5	2.8e-13
AYE97920.1|6069358_6071323_+	serine/threonine protein kinase	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	31.9	2.2e-17
AYE97921.1|6071328_6073050_-	hypothetical protein	NA	NA	NA	NA	NA
6072550:6072568	attL	GCCGCCGGCGCCGCCGGTG	NA	NA	NA	NA
AYE97922.1|6073157_6073937_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AYE97923.1|6073933_6075403_-	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
AYE99177.1|6075585_6075942_-	hypothetical protein	NA	NA	NA	NA	NA
AYE97924.1|6076174_6076585_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99178.1|6076613_6077081_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99179.1|6077210_6077993_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYE97925.1|6079233_6079551_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97926.1|6079566_6081771_-	serine/threonine protein kinase	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	29.6	4.5e-19
AYE97927.1|6081967_6085207_+	DUF3376 domain-containing protein	NA	NA	NA	NA	NA
AYE97928.1|6085213_6085906_-	GAP family protein	NA	NA	NA	NA	NA
AYE97929.1|6085926_6087108_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AYE99180.1|6087249_6087489_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97930.1|6087489_6087879_+|integrase	integrase	integrase	NA	NA	NA	NA
AYE97931.1|6087882_6088614_-	hypothetical protein	NA	A0A088F7R2	Mycobacterium_phage	56.8	3.8e-07
AYE97932.1|6088664_6089324_-	LppP/LprE family lipoprotein	NA	NA	NA	NA	NA
AYE97933.1|6089685_6091176_+	transcriptional regulator, LytR family protein	NA	NA	NA	NA	NA
AYE97934.1|6091195_6091981_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AYE97935.1|6092009_6093554_-	hypothetical protein	NA	NA	NA	NA	NA
AYE97936.1|6093817_6094651_-	KR domain-containing protein	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.1	2.0e-12
AYE99181.1|6094705_6095647_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AYE97937.1|6095769_6095934_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97938.1|6095933_6097427_+	trehalose-6-phosphate synthase	NA	NA	NA	NA	NA
AYE97939.1|6097512_6098091_+	hypothetical protein	NA	NA	NA	NA	NA
AYE97940.1|6098103_6098595_-	mammalian cell entry protein	NA	NA	NA	NA	NA
AYE97941.1|6099326_6100997_-	mammalian cell entry protein	NA	NA	NA	NA	NA
AYE97942.1|6101008_6102163_-	mammalian cell entry protein	NA	NA	NA	NA	NA
AYE97943.1|6102159_6103590_-	mammalian cell entry protein	NA	NA	NA	NA	NA
AYE99182.1|6103600_6104611_-	mammalian cell entry protein	NA	NA	NA	NA	NA
AYE97944.1|6104663_6105719_-	mammalian cell entry protein	NA	NA	NA	NA	NA
AYE97945.1|6105718_6106921_-	MCE-family protein	NA	NA	NA	NA	NA
AYE97946.1|6106926_6107769_-	ABC transporter permease	NA	NA	NA	NA	NA
AYE97947.1|6107815_6108580_-	ABC transporter permease	NA	NA	NA	NA	NA
AYE99183.1|6108810_6110172_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
6125856:6125874	attR	CACCGGCGGCGCCGGCGGC	NA	NA	NA	NA
>prophage 1
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	0	19728	305730		Streptococcus_phage(100.0%)	18	NA	NA
AYE99260.1|295_640_+	NADH-quinone oxidoreductase subunit I	NA	NA	NA	NA	NA
AYE99488.1|609_1896_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99261.1|1888_2809_+	NADH-quinone oxidoreductase subunit H	NA	NA	NA	NA	NA
AYE99262.1|2813_3377_+	NADH:ubiquinone oxidoreductase subunit J	NA	NA	NA	NA	NA
AYE99263.1|3373_3676_+	NADH-quinone oxidoreductase subunit K	NA	NA	NA	NA	NA
AYE99489.1|3785_5513_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99264.1|5518_7009_+	oxidoreductase	NA	NA	NA	NA	NA
AYE99490.1|7024_8425_+	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA	NA
AYE99265.1|8459_8834_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYE99266.1|8830_10756_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.9	9.8e-103
AYE99491.1|10923_11694_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99267.1|12132_12756_-	DUF5134 domain-containing protein	NA	NA	NA	NA	NA
AYE99268.1|12819_15117_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	2.7e-83
AYE99492.1|15196_15472_-	DUF1490 domain-containing protein	NA	NA	NA	NA	NA
AYE99269.1|15642_16005_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE99270.1|16307_16595_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE99493.1|17066_17372_+	DUF1490 domain-containing protein	NA	NA	NA	NA	NA
AYE99271.1|17358_19728_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.0	2.5e-92
>prophage 2
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	24192	29003	305730		Mycobacterium_phage(66.67%)	4	NA	NA
AYE99277.1|24192_24906_-	ParA family protein	NA	D3JZ99	Mycobacterium_phage	29.9	2.0e-05
AYE99494.1|25733_26528_+	ParA family protein	NA	H7BUL8	unidentified_phage	32.1	1.9e-12
AYE99278.1|26520_26913_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99279.1|27101_29003_-	hypothetical protein	NA	V5UNW4	Mycobacterium_phage	40.9	1.1e-127
>prophage 3
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	44784	51085	305730		Mycobacterium_phage(66.67%)	3	NA	NA
AYE99497.1|44784_45336_+	hypothetical protein	NA	Q9ZX60	Mycobacterium_phage	51.6	2.3e-28
AYE99294.1|45332_46865_+	type VII secretion protein EccB	NA	V5UN45	Mycobacterium_phage	36.3	7.4e-69
AYE99295.1|46861_51085_+	type VII secretion protein EccC	NA	A0A0A0RUH6	Bacillus_phage	30.3	4.4e-15
>prophage 4
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	57610	62602	305730	protease	Mycobacterium_phage(100.0%)	3	NA	NA
AYE99498.1|57610_59152_+|protease	type VII secretion-associated serine protease mycosin	protease	V5UPA7	Mycobacterium_phage	35.7	1.8e-70
AYE99303.1|59148_60744_+	type VII secretion protein EccE	NA	NA	NA	NA	NA
AYE99499.1|60763_62602_+	type VII secretion AAA-ATPase EccA	NA	V5UQM2	Mycobacterium_phage	30.1	5.4e-66
>prophage 5
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	76054	78126	305730		Mycobacterium_phage(100.0%)	2	NA	NA
AYE99316.1|76054_76717_+	hypothetical protein	NA	V5UQM8	Mycobacterium_phage	29.3	1.9e-13
AYE99317.1|76716_78126_+	type VI secretion protein	NA	V5UN59	Mycobacterium_phage	28.7	7.5e-44
>prophage 6
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	88829	91155	305730		Mycobacterium_phage(100.0%)	3	NA	NA
AYE99325.1|88829_89366_-	hypothetical protein	NA	G8ID36	Mycobacterium_phage	29.0	1.2e-13
AYE99326.1|89394_89736_-	hypothetical protein	NA	A0A0K1LT78	Mycobacterium_phage	37.2	3.5e-11
AYE99327.1|90111_91155_-	DUF945 domain-containing protein	NA	Q1A023	Mycobacterium_phage	45.6	8.8e-74
>prophage 7
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	98064	99846	305730		Gordonia_phage(50.0%)	3	NA	NA
AYE99335.1|98064_99315_-	hypothetical protein	NA	A0A160DFD9	Gordonia_phage	35.7	4.5e-08
AYE99336.1|99311_99608_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99337.1|99636_99846_-	hypothetical protein	NA	V5UN81	Mycobacterium_phage	58.2	6.1e-11
>prophage 8
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	103676	110785	305730	integrase	Corynebacterium_phage(33.33%)	5	94835:94848	106226:106239
94835:94848	attL	CGGCATCGGCGTCG	NA	NA	NA	NA
AYE99341.1|103676_104801_-|integrase	integrase	integrase	A0A220NQQ9	Corynebacterium_phage	25.0	5.5e-05
AYE99342.1|105686_107336_-	nuclease	NA	A0A2P1N496	Mycobacterium_phage	44.9	1.4e-97
106226:106239	attR	CGGCATCGGCGTCG	NA	NA	NA	NA
AYE99343.1|107579_107801_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99344.1|108345_108945_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99345.1|109726_110785_-	recombinase	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	25.3	6.5e-08
>prophage 9
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	115448	116330	305730		Escherichia_phage(100.0%)	1	NA	NA
AYE99349.1|115448_116330_+	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	31.5	1.1e-19
>prophage 10
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	124306	125407	305730		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
AYE99357.1|124306_125407_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	28.0	2.7e-12
>prophage 11
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	134158	135859	305730		Tupanvirus(100.0%)	1	NA	NA
AYE99365.1|134158_135859_-	cyclohexanecarboxylate-CoA ligase	NA	A0A2K9KZV5	Tupanvirus	24.2	8.6e-10
>prophage 12
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	146374	147481	305730		Synechococcus_phage(100.0%)	1	NA	NA
AYE99376.1|146374_147481_-	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.1	9.8e-31
>prophage 13
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	151328	159457	305730		Micromonas_sp._RCC1109_virus(50.0%)	6	NA	NA
AYE99380.1|151328_153809_-	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	42.5	2.0e-15
AYE99381.1|154002_154815_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AYE99382.1|154832_155714_-	KR domain-containing protein	NA	NA	NA	NA	NA
AYE99383.1|155716_157297_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.0	5.5e-35
AYE99384.1|157484_158507_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	32.3	7.4e-41
AYE99385.1|158503_159457_-	acetaldehyde dehydrogenase (acetylating)	NA	E5EQ71	Micromonas_sp._RCC1109_virus	35.2	1.8e-36
>prophage 14
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	162849	163674	305730		Mycobacterium_phage(100.0%)	1	NA	NA
AYE99389.1|162849_163674_-	2-hydroxy-6-oxo-2,4-heptadienoate hydrolase	NA	A0A076YK43	Mycobacterium_phage	26.0	3.3e-07
>prophage 15
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	179122	185088	305730		uncultured_Mediterranean_phage(50.0%)	4	NA	NA
AYE99400.1|179122_182731_+	protein kinase	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	33.0	5.7e-19
AYE99401.1|182791_183190_-	DUF2834 domain-containing protein	NA	NA	NA	NA	NA
AYE99402.1|183245_184049_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99403.1|184182_185088_+	oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	29.7	5.2e-22
>prophage 16
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	190288	191047	305730		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
AYE99411.1|190288_191047_-	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	32.1	2.6e-14
>prophage 17
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	194441	195209	305730		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AYE99415.1|194441_195209_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.0	9.5e-09
>prophage 18
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	206209	206868	305730		Mycobacterium_phage(100.0%)	2	NA	NA
AYE99425.1|206209_206479_+	hypothetical protein	NA	V5UPP2	Mycobacterium_phage	46.6	1.3e-13
AYE99426.1|206475_206868_+	PIN domain-containing protein	NA	V5UQI8	Mycobacterium_phage	47.3	2.9e-22
>prophage 19
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	211246	290070	305730	transposase	Acinetobacter_phage(10.0%)	49	NA	NA
AYE99510.1|211246_212608_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
AYE99431.1|212727_213915_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AYE99432.1|214638_215079_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AYE99433.1|215551_215995_-	STAS domain-containing protein	NA	NA	NA	NA	NA
AYE99434.1|216153_216909_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYE99435.1|217245_217689_-	hypothetical protein	NA	A0A0P0I4A4	Acinetobacter_phage	36.1	3.8e-10
AYE99436.1|217685_218432_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99437.1|219432_220980_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AYE99438.1|221512_222415_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99439.1|222955_224731_+	lysine biosynthesis protein LysW	NA	A0A1B1P7Q7	Bacillus_phage	26.4	9.6e-12
AYE99440.1|225107_226355_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99441.1|227174_228515_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	29.5	2.4e-31
AYE99442.1|228734_229052_+	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
AYE99443.1|229729_230044_-	PE family protein	NA	NA	NA	NA	NA
AYE99444.1|230445_230739_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
AYE99445.1|230900_231128_+	copper chaperone	NA	NA	NA	NA	NA
AYE99446.1|234116_234488_-	VapC toxin family PIN domain ribonuclease	NA	NA	NA	NA	NA
AYE99447.1|234492_234741_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
AYE99448.1|234810_235557_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99449.1|235632_236874_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99450.1|238097_238328_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99451.1|238454_238892_+	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
AYE99511.1|240102_241464_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
AYE99512.1|241622_242846_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYE99452.1|243597_244656_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
AYE99453.1|245476_245911_+	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
AYE99454.1|246749_247478_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
AYE99455.1|247695_248889_-	pyridoxal-5'-phosphate-dependent protein subunit beta	NA	NA	NA	NA	NA
AYE99456.1|248991_249363_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99457.1|249593_250745_-	PPE family protein	NA	NA	NA	NA	NA
AYE99458.1|250773_251073_-	PE family protein	NA	NA	NA	NA	NA
AYE99459.1|251477_251756_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99460.1|252190_253675_-	PPE family protein	NA	NA	NA	NA	NA
AYE99513.1|254217_254541_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99461.1|254642_255812_+	pyridoxal-5'-phosphate-dependent protein subunit beta	NA	A0A1W6JIM2	Lactococcus_phage	32.5	1.4e-35
AYE99462.1|255811_257113_+	MFS transporter	NA	NA	NA	NA	NA
AYE99463.1|257194_258712_+	multicopper oxidase family protein	NA	NA	NA	NA	NA
AYE99464.1|259092_259560_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99465.1|259973_264164_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99466.1|264855_266117_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	54.0	1.0e-68
AYE99467.1|267373_267883_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99468.1|268925_269723_-|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	44.5	5.0e-53
AYE99469.1|269722_270958_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.3	6.4e-15
AYE99470.1|271061_271322_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99471.1|272299_273535_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	43.6	1.7e-79
AYE99472.1|273556_273739_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99473.1|273965_276296_-	ABC transporter permease	NA	NA	NA	NA	NA
AYE99474.1|276292_276994_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.8	3.4e-37
AYE99475.1|277059_290070_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	23.8	1.2e-108
>prophage 20
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	295452	298535	305730		Synechococcus_phage(50.0%)	2	NA	NA
AYE99514.1|295452_296538_+	phosphate ABC transporter substrate-binding protein PstS	NA	E3SJA4	Synechococcus_phage	26.9	4.0e-13
AYE99480.1|296555_298535_+	serine/threonine protein kinase	NA	M1HZT4	Acanthocystis_turfacea_Chlorella_virus	31.3	2.3e-14
>prophage 21
CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	305730	301863	304113	305730		uncultured_virus(100.0%)	1	NA	NA
AYE99484.1|301863_304113_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	7.2e-89
>prophage 1
CP025548	Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence	144093	10137	117319	144093	protease,transposase,integrase	Saccharomonospora_phage(28.57%)	109	10379:10438	115910:117361
AYE99523.1|10137_10554_-|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	51.1	1.5e-32
10379:10438	attL	TTGAACTCGACCAACTCGGTGCCCAGTTCGGTGCAGGCATCGCGCATGATGTTTTCGCAG	NA	NA	NA	NA
AYE99524.1|10576_11788_+|transposase	transposase	transposase	I4AZM3	Saccharomonospora_phage	51.8	5.8e-77
AYE99525.1|11871_12150_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99526.1|12169_12652_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE99527.1|12683_13358_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99528.1|13495_16153_-	hypothetical protein	NA	A0A221SAP7	Ralstonia_phage	27.6	1.9e-27
AYE99529.1|17068_17299_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99530.1|17750_18410_+	hypothetical protein	NA	A0A0N7CEF3	Skermania_phage	33.6	3.0e-11
AYE99531.1|18430_18862_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99532.1|18858_19743_+	hypothetical protein	NA	A0A0N7CDP5	Skermania_phage	31.0	1.0e-22
AYE99533.1|19985_20717_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99534.1|20905_21769_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99535.1|22558_23191_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99536.1|23187_24198_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99537.1|24239_25814_-	PE family protein	NA	NA	NA	NA	NA
AYE99538.1|25991_26438_+	transcriptional regulator	NA	V5UPP6	Mycobacterium_phage	38.5	1.3e-18
AYE99539.1|26981_28907_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99540.1|28903_29755_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99541.1|29751_31650_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99542.1|31682_34544_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99543.1|34551_34770_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99544.1|34849_35668_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99545.1|35724_36333_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99546.1|37481_39284_-	type VII secretion AAA-ATPase EccA	NA	V5UQM2	Mycobacterium_phage	28.1	5.1e-45
AYE99547.1|39354_41022_-	type VII secretion protein EccE	NA	NA	NA	NA	NA
AYE99548.1|41014_42709_-|protease	type VII secretion-associated serine protease	protease	V5UPA7	Mycobacterium_phage	33.1	1.9e-49
AYE99549.1|42718_44194_-	type VII secretion integral membrane protein EccD	NA	NA	NA	NA	NA
AYE99642.1|44193_45135_-	MinD/ParA family protein	NA	NA	NA	NA	NA
AYE99550.1|45317_46259_-	ESX secretion-associated protein EspG	NA	NA	NA	NA	NA
AYE99551.1|46167_46455_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99552.1|46505_46823_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99553.1|46908_48198_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99554.1|48100_48397_-	PE family protein	NA	NA	NA	NA	NA
AYE99555.1|48467_48803_-	nucleoid-associated protein Lsr2	NA	A0A2H4PGG5	Streptomyces_phage	45.2	1.1e-12
AYE99556.1|48819_51762_-	type VII secretion protein EccCb	NA	A0A0K2D129	Bacillus_phage	30.2	2.7e-11
AYE99557.1|51767_52958_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99558.1|52999_54481_-	type VII secretion protein EccB	NA	NA	NA	NA	NA
AYE99559.1|54499_55399_-	hypothetical protein	NA	A0A142KA90	Gordonia_phage	59.7	4.8e-36
AYE99560.1|55395_55713_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99561.1|56021_56306_-	DUF2694 domain-containing protein	NA	NA	NA	NA	NA
AYE99562.1|56314_56626_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99563.1|56638_58732_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99564.1|59195_60449_-|transposase	transposase	transposase	I4AZI9	Saccharomonospora_phage	57.9	1.7e-124
AYE99643.1|60451_60850_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	84.7	2.7e-63
AYE99565.1|61015_61279_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99644.1|61275_61509_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99566.1|61701_62373_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99567.1|62369_64379_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99568.1|64378_64987_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99569.1|64983_65193_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99570.1|65329_65542_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99571.1|65538_66018_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99572.1|66270_67524_-|transposase	transposase	transposase	I4AZI9	Saccharomonospora_phage	57.9	1.7e-124
AYE99645.1|67526_67925_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	84.7	2.7e-63
AYE99573.1|68032_68233_-	hypothetical protein	NA	G1D1H1	Mycobacterium_virus	71.4	6.9e-12
AYE99574.1|68234_68456_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99575.1|68620_68929_-	MazF family transcriptional regulator	NA	NA	NA	NA	NA
AYE99576.1|68925_69153_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99577.1|69318_69735_-|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	51.1	1.5e-32
AYE99578.1|69757_70969_+|transposase	transposase	transposase	I4AZM3	Saccharomonospora_phage	51.8	5.8e-77
AYE99579.1|71746_72484_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99580.1|72533_73784_+	DNA-binding protein	NA	A0A0U4JD08	Gordonia_phage	28.5	9.7e-11
AYE99581.1|73810_75016_+|transposase	transposase	transposase	S6C485	Thermus_phage	30.2	3.0e-09
AYE99582.1|76982_78239_+|integrase	integrase	integrase	NA	NA	NA	NA
AYE99583.1|78235_80704_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AYE99584.1|81095_81527_+|transposase	transposase	transposase	NA	NA	NA	NA
AYE99585.1|81735_82062_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99586.1|82225_82591_-	STAS/SEC14 domain-containing protein	NA	NA	NA	NA	NA
AYE99587.1|82617_82950_-	YnfA family protein	NA	A0A2H4JF35	uncultured_Caudovirales_phage	34.0	7.5e-11
AYE99588.1|82961_83441_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYE99589.1|83437_83779_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99590.1|85866_86238_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE99646.1|86352_86982_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
AYE99591.1|86978_87632_+	guanylyl cyclase	NA	NA	NA	NA	NA
AYE99647.1|87702_88062_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE99592.1|88163_88655_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AYE99593.1|88757_89123_+	transcriptional regulator	NA	A0A218MNF3	uncultured_virus	41.2	1.5e-07
AYE99594.1|89119_90223_+	arsenical-resistance protein	NA	NA	NA	NA	NA
AYE99595.1|90229_90898_+	phosphotyrosine protein phosphatase	NA	A0A2H4PQT9	Staphylococcus_phage	38.0	5.5e-13
AYE99596.1|90928_91345_+	low molecular weight phosphatase family protein	NA	NA	NA	NA	NA
AYE99597.1|91858_92380_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99598.1|92383_93175_-	chromosome partitioning protein ParA	NA	D4HTX7	Vibrio_phage	28.5	1.2e-11
AYE99599.1|94082_94337_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99600.1|95681_96782_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99601.1|96797_97658_-	hypothetical protein	NA	A0A1J0GW44	Streptomyces_phage	50.5	7.4e-18
AYE99602.1|97647_98634_-	transcriptional regulator	NA	NA	NA	NA	NA
AYE99603.1|98697_99453_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99604.1|99527_100157_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99605.1|100149_100389_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99606.1|100490_100979_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99607.1|101049_101910_+	hypothetical protein	NA	A0A240F4W0	Ochrobactrum_phage	23.7	4.1e-08
AYE99608.1|101906_102953_+	alpha/beta hydrolase	NA	A0A2P1CIS6	Mycobacterium_phage	28.5	2.9e-08
AYE99609.1|102999_103296_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99610.1|103310_103919_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99611.1|103915_104200_+	hypothetical protein	NA	A0A1D8EX57	Mycobacterium_phage	39.8	2.1e-06
AYE99612.1|104223_105000_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99613.1|105056_105320_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99614.1|105289_105520_-	hypothetical protein	NA	NA	NA	NA	NA
AYE99615.1|105744_106284_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99648.1|106280_106727_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99616.1|106723_109570_+	restriction endonuclease subunit R	NA	A0A2H4UTW8	Bodo_saltans_virus	24.0	1.3e-18
AYE99617.1|110016_110883_+	hypothetical protein	NA	A0A142K8V3	Gordonia_phage	42.6	6.7e-35
AYE99649.1|110894_111797_+	DNA methyltransferase	NA	A0A2H4JFS7	uncultured_Caudovirales_phage	36.5	8.5e-33
AYE99618.1|112185_112428_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99650.1|112939_113395_+	hypothetical protein	NA	A0A2K9VF48	Mycobacterium_phage	63.3	4.6e-51
AYE99619.1|113916_115122_+	hypothetical protein	NA	NA	NA	NA	NA
AYE99620.1|115297_115861_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	36.9	9.4e-22
AYE99621.1|115794_116085_-	hypothetical protein	NA	I4AZM1	Saccharomonospora_phage	48.4	2.7e-09
AYE99622.1|116107_117319_+|transposase	transposase	transposase	I4AZM3	Saccharomonospora_phage	51.8	5.8e-77
115910:117361	attR	TTGAACTCGACCAACTCGGTGCCCAGTTCGGTGCAGGCATCGCGCATGATGTTTTCGCAGTGGGTGAGCATGGCGTCGGTGAACACCGGTCGCCGGTACTTCGTCACGAACACCACGTGGGCGTGCAGCAGCGACACGCTGTGCCGGGCACGGCGATAGCTCGGGGTTGTTGTCATAGGCGGCCTTTACAGTCGGGGGATGCAGATGCGCTACCGGTATCGCATCGAACCGACATCGGCCCAGCAGGAGATGCTGGCGCGGGTGTTCGGGTGCTGCCGGGTGGTGTTCAACGACGCGCTGAGAGTCCGCGACGAGGCGTATGGGGCTCGGGTGAAGTTGTCCGACAGCGAGATTCAGCGCTGCGTGATCACCGCGGCCAAGACCACTACCGAGCGAGCCTGGTTGTGCGAGGTGCCGAGTGTGGCGTTGGTGCAGTCGGTCAACGACTCCCGCCGCGCCTGGCGCAATTTCTTCGACTCAACCAGTGGGAAACGTCGGGGTCGGCGGGTGGGCCGGCCGCGGTTCAAATCCCGCAAGGATCACCGGCAGTCGTTTCGGCTTACCCGCAACGGGTTCAGCCTGAAAGCCAACGGCCGGCTGTTCGTGGCCAAAGTCGGCGAGGTGCGGGTGCGCTGGTCACGCGAGCTACCCAGCACGCCGTCGTCGGTCACGATCATTCGGGAACCCGATGGCCATTTCTACGCCAGTTTCGTTGTCGACGTTGGGGCCTCACCGCTGCCCGTGGTGGACCGGGAGGTCGGTGTGGATGTAGGGGTCGCTCGGTTGGCCACGACCGCCACCACCGATGGCCGTCGGGCCGATGTCGTCAATCCGAAGCATTTGGGTCGCAAGCTGCGGAAGCTGCGGCGGTTGGAGCGGGAGAAGTCTCGACGGCAGAAAGGATCGGCCAGCAGGGACAAGTCGCGGCGCAAGGTAGCCGTCGCGCACAACAAGGTTGCCCGTGCTCGGCGGGACTATCACCACAAGCAGGCTTTGGCGTTGGTTCGCGAGAATCAAGTGATCCACGTCGAAGACCTCAACATCGTGGGGATGGTCAGAAACCGTCGTCTGGCACGGGCAATCAGCGATGCCGGATGGGGTCAGTTCGTGCGGATCATCGACGAGAAAGCCGACCGCTACGGCCGCACCGTGCACACCGTGTCGCGGTGGCTGGCATCGAGCAAAACCTGCTCGGACTGTGGGCACCGACTCGACGAACTGCCACTGCAGATTCGGTCGTGGACGTGCCCGAAGTGCCGAGTGGTCCACGACCGCGACCACAACGCCGCCAAGACCATTCTCGCTGCCGGGCGGGCAGAGAGACGAAACGCCGGTGGAGCCTCGGTAAGTCCTCCCACCACTCGGGAGGCGCGGGGCGACGAAGCAGGAAGCACCCCAACAGCGGCGTAGCCGCACGGGAATCCCCGCCATTCATGGCGGGGAGCACGTCAA	NA	NA	NA	NA
