The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	704992	711790	3421679		Acinetobacter_phage(50.0%)	8	NA	NA
AYF00392.1|704992_706150_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	32.6	2.8e-44
AYF00393.1|706270_706966_-	transcriptional repressor LexA	NA	E5DV74	Deep-sea_thermophilic_phage	37.8	4.0e-14
AYF00394.1|707069_708251_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AYF00395.1|708260_708731_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AYF00396.1|708727_709519_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	52.9	8.5e-53
AYF00397.1|709515_710178_-	uracil-DNA glycosylase	NA	G0ZLG1	Human_herpesvirus	48.1	2.7e-36
AYF00398.1|710174_711203_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.5	1.8e-58
AYF00399.1|711199_711790_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.4	3.0e-55
>prophage 2
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	722478	733090	3421679		Ruegeria_phage(37.5%)	14	NA	NA
AYF00412.1|722478_723072_+	cold shock domain-containing protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	43.5	7.6e-06
AYF00413.1|723068_723566_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
AYF00414.1|723703_724810_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00415.1|724802_724979_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00416.1|724978_725362_-	DUF2312 domain-containing protein	NA	A0A1X9HX62	Ruegeria_phage	77.9	2.8e-33
AYF00417.1|725358_725637_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00418.1|725633_727655_-	DNA methyltransferase	NA	A0A1X9HVK8	Ruegeria_phage	72.4	1.1e-266
AYF00419.1|727768_727927_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00420.1|727935_728679_-	DUF550 domain-containing protein	NA	K7PGV7	Enterobacterial_phage	58.1	8.6e-23
AYF00421.1|728675_730352_-	ATP-dependent helicase	NA	A0A1X9HX80	Ruegeria_phage	50.7	1.2e-144
AYF00422.1|730348_730714_-	hypothetical protein	NA	A0A0U1UNQ6	Pseudomonas_phage	36.3	1.7e-08
AYF00423.1|730717_731827_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	33.1	3.0e-32
AYF00424.1|731817_732318_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00425.1|732655_733090_-	tellurite resistance protein	NA	A0A1Y0T181	Sinorhizobium_phage	56.6	5.0e-31
>prophage 3
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	744001	762918	3421679	tail,terminase,capsid,portal,head,protease,plate	Pseudomonas_phage(21.43%)	28	NA	NA
AYF00444.1|744001_745720_+|terminase	phage terminase large subunit family protein	terminase	A0A2K9V3X4	Faecalibacterium_phage	42.8	1.1e-110
AYF00445.1|745701_747345_+|portal	phage portal protein	portal	A0A0A8IK73	Aurantimonas_phage	46.1	2.4e-110
AYF00446.1|747334_747577_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00447.1|747591_748587_+|protease	prophage Clp protease-like protein	protease	A0A0A8IKZ4	Aurantimonas_phage	60.1	2.4e-81
AYF00448.1|748599_748968_+|head	head decoration protein	head	NA	NA	NA	NA
AYF00449.1|748971_750009_+|capsid	major capsid protein	capsid	R9TRN2	Rhizobium_phage	56.6	3.8e-109
AYF00450.1|750019_750199_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00451.1|750244_750634_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00452.1|750634_751369_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00453.1|751361_751883_+	hypothetical protein	NA	A0A219VHA3	Ochrobactrum_phage	30.1	1.9e-08
AYF00454.1|751893_752058_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00455.1|752062_752386_+|plate	baseplate assembly protein	plate	K4I3Z7	Acidithiobacillus_phage	49.5	4.0e-17
AYF00456.1|752382_753273_+|plate	baseplate assembly protein	plate	V5YTH6	Pseudomonas_phage	45.1	2.7e-55
AYF00457.1|753276_753834_+|tail	phage tail protein I	tail	V5YTN0	Pseudomonas_phage	49.5	3.4e-16
AYF00458.1|753833_754808_+	hypothetical protein	NA	A4JWL8	Burkholderia_virus	56.5	7.8e-08
AYF00459.1|754873_756058_+	hypothetical protein	NA	A0A0M3LPE9	Mannheimia_phage	26.8	1.3e-09
AYF00460.1|756070_756586_+|tail	phage tail protein	tail	NA	NA	NA	NA
AYF00461.1|756582_756891_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AYF00462.1|756890_757013_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00463.1|757009_757585_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00464.1|757639_758056_-	Arc family DNA-binding protein	NA	H6WRU6	Salmonella_phage	40.0	4.8e-07
AYF00465.1|758160_758337_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
AYF00466.1|758410_759235_+	phage antirepressor protein	NA	A0A1B0YZY9	Pseudomonas_phage	41.7	1.4e-37
AYF00467.1|759231_759381_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00468.1|759377_759719_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00469.1|759779_762269_+|tail	phage tail tape measure protein	tail	D5LGY4	Escherichia_phage	31.4	5.4e-69
AYF00470.1|762268_762712_+	oxidoreductase	NA	NA	NA	NA	NA
AYF00471.1|762708_762918_+|tail	phage tail protein	tail	E5E3W5	Burkholderia_phage	47.0	1.2e-09
>prophage 4
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	1209479	1249644	3421679	transposase,terminase	Enterobacteria_phage(15.38%)	43	NA	NA
AYF00881.1|1209479_1210508_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYF00882.1|1210597_1210786_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00883.1|1210825_1211758_+|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	39.9	1.1e-56
AYF00884.1|1213203_1213845_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.9	1.1e-10
AYF00885.1|1213943_1214993_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00886.1|1215580_1215868_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYF00887.1|1215864_1216023_+	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
AYF00888.1|1216076_1216328_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AYF00889.1|1216406_1216760_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
AYF00890.1|1217262_1217673_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00891.1|1217765_1219832_-	AAA family ATPase	NA	G8DDJ2	Micromonas_pusilla_virus	30.9	3.9e-25
AYF00892.1|1219960_1220959_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00893.1|1221128_1221764_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00894.1|1221886_1222096_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00895.1|1222079_1222193_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00896.1|1222230_1222908_-	hypothetical protein	NA	A0A0R6PHV6	Moraxella_phage	35.1	2.2e-17
AYF00897.1|1223180_1223729_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYF00898.1|1224075_1224189_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00899.1|1224353_1224554_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00900.1|1225515_1225758_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYF00901.1|1225846_1226152_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00902.1|1226195_1226672_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00903.1|1226641_1226989_-|terminase	phage terminase large subunit family protein	terminase	A0A2H4JIC6	uncultured_Caudovirales_phage	61.2	4.3e-17
AYF00904.1|1226975_1227584_-	hypothetical protein	NA	A0A2H4JCL4	uncultured_Caudovirales_phage	46.0	4.9e-32
AYF00905.1|1227675_1227897_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00906.1|1227908_1228499_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00907.1|1228495_1228831_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00908.1|1228896_1229532_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00909.1|1229558_1230263_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00910.1|1230259_1231231_-	DNA methyltransferase	NA	A0A1P8VV91	Erythrobacter_phage	31.3	6.7e-60
AYF00911.1|1231223_1231985_-	chromosome partitioning protein ParB	NA	K4HZA5	Acidithiobacillus_phage	67.3	3.0e-47
AYF00912.1|1232255_1232777_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00913.1|1232795_1233740_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYF00914.1|1233736_1233931_-	hypothetical protein	NA	NA	NA	NA	NA
AYF00915.1|1233944_1234199_-	DNA-binding protein	NA	NA	NA	NA	NA
AYF00916.1|1234513_1235104_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00917.1|1235246_1236476_+	DUF4102 domain-containing protein	NA	A0A221SAN4	Ralstonia_phage	33.0	2.3e-36
AYF00918.1|1236635_1239092_+	restriction endonuclease subunit R	NA	A0A088C524	Shewanella_sp._phage	24.0	2.1e-09
AYF00919.1|1239088_1239811_+	hypothetical protein	NA	NA	NA	NA	NA
AYF00920.1|1239821_1241270_+	SAM-dependent DNA methyltransferase	NA	J7I0U9	Acinetobacter_phage	28.7	9.5e-26
AYF00921.1|1242149_1243364_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	46.6	3.2e-43
AYF00922.1|1245708_1246839_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYF00923.1|1248711_1249644_+|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	35.0	6.5e-44
>prophage 5
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	1610849	1623080	3421679	capsid,portal,terminase,protease	Rhodobacter_phage(30.0%)	17	NA	NA
AYF01275.1|1610849_1611173_-	hypothetical protein	NA	A0A0U2BXJ0	Paracoccus_phage	50.0	1.1e-09
AYF01276.1|1611174_1611543_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01277.1|1611539_1612169_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01278.1|1612229_1613471_-|capsid	phage major capsid protein	capsid	Q6JIM7	Burkholderia_virus	37.8	3.6e-58
AYF01279.1|1613473_1614349_-|protease	prophage Clp protease-like protein	protease	A0A0U4B0J0	Pseudomonas_phage	49.4	2.2e-57
AYF01280.1|1614350_1615592_-|portal	phage portal protein	portal	M4QP41	Tetraselmis_viridis_virus	36.3	3.1e-65
AYF01281.1|1615593_1617300_-|terminase	phage terminase large subunit	terminase	I3ULZ6	Rhodobacter_phage	61.1	5.5e-190
AYF01282.1|1617286_1617769_-	hypothetical protein	NA	I3ULZ5	Rhodobacter_phage	50.6	1.6e-33
AYF01283.1|1617978_1618761_-	HNH endonuclease	NA	M4QRD8	Tetraselmis_viridis_virus	37.0	1.7e-08
AYF01284.1|1619398_1620148_-	hypothetical protein	NA	I3ULZ3	Rhodobacter_phage	36.9	8.1e-21
AYF01285.1|1620144_1620720_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01286.1|1620953_1621604_-	DUF1376 domain-containing protein	NA	NA	NA	NA	NA
AYF01287.1|1621593_1621878_-	hypothetical protein	NA	M4NJS1	Sulfitobacter_phage	61.2	6.0e-25
AYF01288.1|1621874_1622369_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01289.1|1622365_1622662_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01290.1|1622658_1622811_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01291.1|1622810_1623080_-	hypothetical protein	NA	A0A1X9HW32	Ruegeria_phage	68.4	6.0e-27
>prophage 6
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	2046069	2058498	3421679	tail,capsid,portal,head,protease	Rhodobacter_phage(22.22%)	16	NA	NA
AYF01725.1|2046069_2046783_-	DUF2793 domain-containing protein	NA	A0A0K1LM54	Rhodobacter_phage	40.8	4.0e-17
AYF01726.1|2046775_2050669_-	Gene Transfer Agent host specificity protein	NA	A0A0K1Y6G6	Rhodobacter_phage	38.9	6.6e-223
AYF01727.1|2050684_2051113_-	Gene Transfer Agent NlpC/P60 family peptidase	NA	A0A1V0DYB6	Dinoroseobacter_phage	52.6	3.4e-32
AYF01728.1|2051109_2051931_-	Gene Transfer Agent FAD/FMN-containing dehydrogenase	NA	A0A0K0PVK1	Roseobacter_phage	38.2	1.0e-45
AYF01729.1|2051927_2052560_-	Gene Transfer Agent associated protein	NA	A0A0B5A2K3	Paracoccus_phage	48.8	5.5e-55
AYF01730.1|2052566_2053235_-|tail	Gene Transfer Agent tail tape measure	tail	C0LP53	Escherichia_virus	37.3	2.8e-09
AYF01731.1|2053257_2053479_-	Gene Transfer Agent associated protein	NA	NA	NA	NA	NA
AYF01732.1|2053475_2053793_-	Gene Transfer Agent associated protein	NA	NA	NA	NA	NA
AYF01733.1|2053794_2054208_-|tail	Gene Transfer Agent tail protein	tail	NA	NA	NA	NA
AYF01734.1|2054219_2054639_-	Gene Transfer Agent associated protein	NA	NA	NA	NA	NA
AYF01735.1|2054635_2054986_-|head,tail	Gene Transfer Agent head-tail adaptor protein	head,tail	NA	NA	NA	NA
AYF01736.1|2054982_2055600_-	Gene Transfer Agent associated protein	NA	NA	NA	NA	NA
AYF01737.1|2055736_2056516_-|capsid	Gene Transfer Agent capsid protein	capsid	Q3HQT0	Burkholderia_phage	47.7	7.1e-36
AYF01738.1|2056538_2057075_-|head,protease	Gene Transfer Agent prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	47.5	1.7e-33
AYF01739.1|2057076_2057310_-	Gene Transfer Agent associated protein	NA	NA	NA	NA	NA
AYF01740.1|2057310_2058498_-|portal	Gene Transfer Agent portal protein	portal	W8ECU7	Geobacillus_phage	37.3	5.7e-61
>prophage 7
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	2269751	2324907	3421679	transposase,holin,tRNA,protease	Bacillus_virus(11.76%)	57	NA	NA
AYF01936.1|2269751_2271533_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AYF01937.1|2271590_2272256_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYF01938.1|2272222_2273011_-	glycoside hydrolase	NA	A0A1U9WQS3	Geobacillus_phage	33.0	2.7e-19
AYF01939.1|2273305_2273623_-	acetyltransferase	NA	NA	NA	NA	NA
AYF01940.1|2274494_2275868_-	FAD-binding protein	NA	S4VRT3	Pandoravirus	28.1	7.7e-09
AYF01941.1|2275989_2276955_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
AYF01942.1|2277093_2278068_+	cobaltochelatase subunit CobS	NA	L7TKP0	Rhizobium_phage	31.1	2.3e-36
AYF01943.1|2278169_2278685_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
AYF01944.1|2278681_2279011_-	transcriptional regulator	NA	NA	NA	NA	NA
AYF01945.1|2279078_2279444_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AYF01946.1|2279510_2281373_+	cobaltochelatase subunit CobT	NA	J9Q7G6	Salmonella_phage	26.5	5.3e-13
AYF01947.1|2281393_2283205_+	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	33.3	3.4e-81
AYF01948.1|2283295_2283976_+	DUF1045 domain-containing protein	NA	NA	NA	NA	NA
AYF01949.1|2283972_2284923_-	magnesium transporter	NA	NA	NA	NA	NA
AYF01950.1|2285097_2286216_+	hypothetical protein	NA	NA	NA	NA	NA
AYF01951.1|2286219_2287173_-	D-glycerate dehydrogenase	NA	Q89388	Paramecium_bursaria_Chlorella_virus	24.7	3.6e-13
AYF01952.1|2287243_2288047_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	31.6	1.2e-17
AYF01953.1|2288092_2288596_-	diacylglyceryl transferase	NA	NA	NA	NA	NA
AYF01954.1|2288809_2289775_+	threonine-phosphate decarboxylase	NA	NA	NA	NA	NA
AYF01955.1|2289758_2290802_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AYF01956.1|2290794_2291280_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	1.2e-20
AYF01957.1|2291329_2291548_-	DUF465 domain-containing protein	NA	NA	NA	NA	NA
AYF01958.1|2291729_2292140_+	heat-shock protein Hsp20	NA	A0A2H4N7P1	Lake_Baikal_phage	39.4	1.0e-17
AYF01959.1|2292153_2292381_+	DUF1150 domain-containing protein	NA	NA	NA	NA	NA
AYF01960.1|2292589_2293081_+	hypothetical protein	NA	NA	NA	NA	NA
AYF01961.1|2293302_2294343_+	ParA-like protein	NA	Q7M293	Enterobacteria_phage	33.4	8.3e-32
AYF01962.1|2294975_2295365_+	IS66 insertion sequence family accessory protein	NA	NA	NA	NA	NA
AYF01963.1|2295361_2295715_+	IS66 insertion sequence family accessory protein	NA	NA	NA	NA	NA
AYF01964.1|2296594_2297809_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	46.6	3.2e-43
AYF01965.1|2299120_2302453_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AYF01966.1|2302633_2303155_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	26.7	8.7e-14
AYF01967.1|2303221_2303791_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01968.1|2303877_2304597_-	sulfate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.8	3.6e-26
AYF01969.1|2304611_2305511_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AYF01970.1|2305503_2306343_-	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AYF01971.1|2306346_2307489_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYF01972.1|2307850_2308213_-	cell division protein ZapA	NA	NA	NA	NA	NA
AYF01973.1|2308216_2308861_-	hypothetical protein	NA	NA	NA	NA	NA
AYF01974.1|2309059_2309647_+	imidazoleglycerol-phosphate dehydratase	NA	NA	NA	NA	NA
AYF01975.1|2309646_2310276_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
AYF01976.1|2310343_2310730_-	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
AYF01977.1|2310868_2311588_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
AYF01978.1|2311592_2312354_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
AYF01979.1|2312350_2312659_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA	NA
AYF01980.1|2312663_2313155_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	37.6	3.8e-11
AYF01981.1|2313164_2314373_-	ribonuclease D	NA	NA	NA	NA	NA
AYF01982.1|2314466_2315609_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	53.8	9.9e-103
AYF01983.1|2315640_2316393_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYF01984.1|2316503_2316890_+	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
AYF01985.1|2316900_2317356_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AYF01986.1|2317470_2318001_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AYF01987.1|2317997_2319644_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.0	3.8e-63
AYF01988.1|2319713_2321171_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYF01989.1|2321167_2321788_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
AYF01990.1|2321857_2322808_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
AYF01991.1|2323007_2323859_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
AYF01992.1|2323851_2324907_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	33.5	1.8e-18
>prophage 8
CP031078	Paracoccus yeei strain CCUG 32053 chromosome, complete genome	3421679	2948583	2988933	3421679	tail,terminase,capsid,head,tRNA,protease	Synechococcus_phage(12.5%)	44	NA	NA
AYF02595.1|2948583_2949216_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
AYF02596.1|2949291_2950419_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.2	3.3e-34
AYF02597.1|2950534_2951119_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA	NA
AYF02598.1|2951208_2951562_-	DUF454 domain-containing protein	NA	NA	NA	NA	NA
AYF02599.1|2951562_2952756_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYF02600.1|2952752_2953127_-	RidA family protein	NA	NA	NA	NA	NA
AYF02601.1|2953119_2953725_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	Q66YC8	Euphorbia_ringspot_virus	30.7	3.0e-10
AYF02602.1|2953721_2954435_-	ribonuclease PH	NA	NA	NA	NA	NA
AYF02603.1|2954484_2955564_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
AYF02604.1|2955567_2956113_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AYF02605.1|2956155_2957028_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	30.0	1.0e-11
AYF02606.1|2957042_2957819_-	ParA family protein	NA	Q8JL10	Natrialba_phage	34.3	6.0e-19
AYF02607.1|2957811_2958396_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AYF02608.1|2958392_2960195_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis protein MnmG	tRNA	NA	NA	NA	NA
AYF02609.1|2960261_2961518_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
AYF02610.1|2961534_2962806_-	transcription termination factor Rho	NA	NA	NA	NA	NA
AYF02611.1|2962926_2963373_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA	NA
AYF02612.1|2963779_2964757_-	immunogenic protein	NA	NA	NA	NA	NA
AYF02613.1|2964948_2966187_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AYF02614.1|2966186_2967263_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYF02615.1|2970484_2971474_+	formate dehydrogenase subunit beta	NA	NA	NA	NA	NA
AYF02616.1|2971473_2972163_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AYF02617.1|2972205_2973111_+	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA	NA
AYF02618.1|2973110_2974442_+|tRNA	L-seryl-tRNA(Sec) selenium transferase	tRNA	NA	NA	NA	NA
AYF02619.1|2974438_2976352_+	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	29.1	3.7e-17
AYF02620.1|2976958_2977375_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02621.1|2977371_2977587_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02622.1|2977583_2977763_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02623.1|2977852_2978044_+	hypothetical protein	NA	NA	NA	NA	NA
AYF02624.1|2978040_2978298_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02625.1|2978907_2979408_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02626.1|2979404_2979758_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02627.1|2979757_2982181_-	hypothetical protein	NA	A0A291AUM6	Sinorhizobium_phage	50.8	4.0e-53
AYF02628.1|2982191_2983895_-|terminase	phage terminase	terminase	A0A1B0RXD3	Streptococcus_phage	31.6	2.3e-63
AYF02629.1|2983905_2984292_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
AYF02630.1|2984288_2984606_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AYF02631.1|2984602_2985010_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
AYF02632.1|2985006_2985435_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
AYF02633.1|2985434_2985746_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
AYF02634.1|2985746_2986181_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02635.1|2986184_2986664_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02636.1|2986660_2987017_-	HNH endonuclease	NA	NA	NA	NA	NA
AYF02637.1|2987016_2987397_-	hypothetical protein	NA	NA	NA	NA	NA
AYF02638.1|2987409_2988933_-|capsid	phage major capsid protein	capsid	Q8W627	Enterobacteria_phage	31.8	4.8e-36
>prophage 1
CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	201841	4540	39957	201841	transposase	Stx2-converting_phage(30.0%)	30	NA	NA
AYF03777.1|4540_5956_+|transposase	Tn552 family transposase	transposase	M4T586	Rhodobacter_phage	29.2	5.1e-16
AYF03778.1|5969_6317_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03779.1|6745_8119_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	42.9	1.8e-42
AYF03780.1|8178_8529_-	IS66 insertion sequence family accessory protein	NA	A0A0P0ZBY2	Stx2-converting_phage	52.3	4.6e-27
AYF03781.1|8525_8939_-	IS66 insertion sequence family accessory protein	NA	Q76S41	Shigella_phage	42.6	1.0e-04
AYF03782.1|10089_10839_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYF03783.1|10975_12043_+	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
AYF03784.1|12039_14778_+	ABC transporter ATP-binding protein/permease	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	1.6e-21
AYF03785.1|14785_15898_+	ABC transporter permease	NA	NA	NA	NA	NA
AYF03786.1|15903_16983_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYF03787.1|17028_17253_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03788.1|17301_19059_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AYF03789.1|19063_20458_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AYF03790.1|20454_21624_+	acetate/propionate family kinase	NA	NA	NA	NA	NA
AYF03791.1|21620_22385_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AYF03792.1|22603_23290_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AYF03793.1|23418_24468_+	S58 family peptidase	NA	NA	NA	NA	NA
AYF03794.1|24567_25443_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AYF03795.1|25439_27311_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.2	5.9e-20
AYF03796.1|27338_28865_+	glutathione ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYF03797.1|28972_29893_+	glutathione ABC transporter permease GsiC	NA	NA	NA	NA	NA
AYF03798.1|29889_30774_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AYF03799.1|30783_31602_+	aminopeptidase	NA	NA	NA	NA	NA
AYF03800.1|31624_32590_+	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA	NA
AYF03801.1|32911_33283_-	mobile element-associated protein	NA	A0A0P0ZBY2	Stx2-converting_phage	44.6	1.2e-14
AYF03802.1|34876_35634_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	38.0	1.9e-09
AYF03803.1|35696_36086_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYF03804.1|36722_37595_+	XRE family transcriptional regulator	NA	E3SLU8	Prochlorococcus_phage	46.1	3.5e-39
AYF03805.1|38420_38774_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AYF03806.1|38831_39957_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	36.0	4.8e-33
>prophage 2
CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	201841	92659	151106	201841	transposase,integrase,protease	Micromonas_pusilla_virus(11.11%)	60	86413:86428	102122:102137
86413:86428	attL	GACCGCCGAGGCCCGC	NA	NA	NA	NA
AYF03865.1|92659_93700_+|integrase	integrase	integrase	NA	NA	NA	NA
AYF03866.1|94152_95358_+	plasmid replication protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	41.0	2.3e-78
AYF03867.1|95347_96313_+	plasmid replication protein RepB	NA	NA	NA	NA	NA
AYF03868.1|96537_97746_+	plasmid replication protein RepC	NA	NA	NA	NA	NA
AYF03869.1|97875_98085_+	DUF159 family protein	NA	NA	NA	NA	NA
AYF03870.1|98684_98963_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03871.1|99285_99708_-	hypothetical protein	NA	R9TP69	Rhizobium_phage	32.1	6.4e-07
AYF03872.1|100029_101358_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03873.1|101424_101856_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03874.1|101947_104011_-	AAA family ATPase	NA	G8DDJ2	Micromonas_pusilla_virus	32.5	4.4e-24
102122:102137	attR	GCGGGCCTCGGCGGTC	NA	NA	NA	NA
AYF03875.1|104137_105097_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03876.1|105266_105902_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03877.1|105962_106199_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AYF03878.1|106236_106911_-	hypothetical protein	NA	A0A0R6PHV6	Moraxella_phage	33.8	1.3e-17
AYF03879.1|107183_107732_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYF03880.1|108081_108324_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYF03881.1|108412_108718_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03882.1|108765_109242_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03883.1|109324_110704_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03884.1|110870_112085_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	46.6	3.2e-43
AYF03885.1|112390_113371_-	biotin synthase BioB	NA	NA	NA	NA	NA
AYF03886.1|113367_113919_-	biotin transporter BioY	NA	NA	NA	NA	NA
AYF03887.1|114017_114656_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYF03888.1|115518_115896_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03889.1|115963_116149_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03890.1|116265_116475_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	48.5	1.5e-09
AYF03891.1|116665_116872_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03892.1|116889_117540_-	alpha/beta hydrolase	NA	A0A1D8EVD1	Mycobacterium_phage	34.8	1.5e-10
AYF03893.1|117718_118132_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AYF03894.1|118362_119553_-	MFS transporter	NA	NA	NA	NA	NA
AYF03895.1|119552_120260_-	arsenic resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	67.2	5.8e-85
AYF03896.1|120256_121333_-	arsenic resistance protein ArsB	NA	NA	NA	NA	NA
AYF03897.1|121348_121774_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	66.9	1.3e-44
AYF03898.1|121777_122137_-	transcriptional regulator	NA	NA	NA	NA	NA
AYF03899.1|122384_125585_-	error-prone DNA polymerase	NA	A0A0K1Y8T6	Streptomyces_phage	27.0	9.0e-85
AYF03900.1|125581_126967_-	DNA polymerase Y family protein	NA	NA	NA	NA	NA
AYF03901.1|126983_127739_-	damage-inducible protein	NA	NA	NA	NA	NA
AYF03902.1|127849_128542_+	SOS response-associated peptidase	NA	A0A291AUP1	Sinorhizobium_phage	49.3	1.4e-54
AYF03903.1|128541_128856_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03904.1|129052_130284_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	61.3	1.7e-84
AYF03905.1|130785_131955_-	sodium:proton exchanger	NA	NA	NA	NA	NA
AYF03906.1|132003_132426_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	38.8	9.5e-11
AYF03907.1|132477_133320_-	hypothetical protein	NA	A0A1V0SCZ1	Indivirus	26.1	7.2e-10
AYF03908.1|133310_134063_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AYF03909.1|134096_134657_-	ETC complex I subunit	NA	NA	NA	NA	NA
AYF03910.1|134658_135279_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03911.1|135278_135482_-	hypothetical protein	NA	NA	NA	NA	NA
AYF03912.1|135490_136138_-	HdeD family acid-resistance protein	NA	NA	NA	NA	NA
AYF03913.1|136134_137307_-	flagellar biosynthesis protein FliA	NA	NA	NA	NA	NA
AYF03914.1|137384_140279_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.1	2.0e-123
AYF03915.1|140342_142175_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	43.4	3.4e-105
AYF03916.1|142192_142705_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYF03917.1|142823_143252_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AYF03918.1|143266_143665_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	28.1	2.5e-05
AYF03919.1|143685_144177_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AYF03920.1|144249_145239_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03921.1|145460_145952_+	hypothetical protein	NA	NA	NA	NA	NA
AYF03922.1|146438_146828_+	IS66 insertion sequence family accessory protein	NA	NA	NA	NA	NA
AYF03923.1|146824_147178_+	IS66 insertion sequence family accessory protein	NA	S5VXZ8	Leptospira_phage	35.6	1.1e-12
AYF03924.1|150074_151106_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 1
CP031082	Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence	156389	23554	30517	156389		Enterobacteria_phage(50.0%)	7	NA	NA
AYF03995.1|23554_24445_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	56.4	2.7e-92
AYF03996.1|24441_25293_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	37.5	9.8e-31
AYF03997.1|25289_26327_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	7.4e-97
AYF03998.1|26323_26905_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	46.4	6.3e-37
AYF03999.1|27056_28046_+	siderophore-interacting protein	NA	NA	NA	NA	NA
AYF04000.1|28024_29725_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.1	1.2e-59
AYF04001.1|29740_30517_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	23.4	1.4e-12
