assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003606305.1_ASM360630v1	CP031154	Bifidobacterium animalis subsp. lactis strain HN019 chromosome, complete genome	1	183331-183716	1	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	GGTCGGTTTTGCGGATGCTTCCG	23	0	0	NA	NA	NA	7	7	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|246aa|up_7|CP031154.1_173727_174465_+,NA|244aa|up_4|CP031154.1_176752_177484_-,NA|153aa|down_4|CP031154.1_189408_189867_-	NA|366aa|up_9|CP031154.1_170294_171392_-	pfam17996, CE2_N, Carbohydrate esterase 2 N-terminal	NA|461aa|up_8|CP031154.1_171915_173298_+	TIGR03356, BGL, beta-galactosidase	NA|246aa|up_7|CP031154.1_173727_174465_+	NA	NA|343aa|up_6|CP031154.1_174721_175750_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|212aa|up_5|CP031154.1_176033_176669_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|244aa|up_4|CP031154.1_176752_177484_-	NA	NA|422aa|up_3|CP031154.1_178257_179523_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|247aa|up_2|CP031154.1_180050_180791_+	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|289aa|up_1|CP031154.1_180792_181659_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|499aa|up_0|CP031154.1_181811_183308_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|234aa|down_0|CP031154.1_183889_184591_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|985aa|down_1|CP031154.1_184601_187556_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|515aa|down_2|CP031154.1_187610_189155_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|82aa|down_3|CP031154.1_189166_189412_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|153aa|down_4|CP031154.1_189408_189867_-	NA	NA|574aa|down_5|CP031154.1_189763_191485_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|141aa|down_6|CP031154.1_191481_191904_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|191aa|down_7|CP031154.1_191722_192295_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|198aa|down_8|CP031154.1_192598_193192_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|640aa|down_9|CP031154.1_193263_195183_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCA_003606305.1_ASM360630v1	CP031154	Bifidobacterium animalis subsp. lactis strain HN019 chromosome, complete genome	2	219108-219191	2	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTTCCGTCTCTTTTTACGCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|256aa|up_2|CP031154.1_215439_216207_+,NA|237aa|up_1|CP031154.1_216386_217097_-,NA	NA|733aa|up_9|CP031154.1_204418_206617_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|923aa|up_8|CP031154.1_206613_209382_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|214aa|up_7|CP031154.1_209675_210317_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|247aa|up_6|CP031154.1_210313_211054_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|496aa|up_5|CP031154.1_211106_212594_+	cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system	NA|528aa|up_4|CP031154.1_212643_214227_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|294aa|up_3|CP031154.1_214422_215304_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|256aa|up_2|CP031154.1_215439_216207_+	NA	NA|237aa|up_1|CP031154.1_216386_217097_-	NA	NA|523aa|up_0|CP031154.1_217427_218996_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|467aa|down_0|CP031154.1_220021_221422_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|432aa|down_1|CP031154.1_221681_222977_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|down_2|CP031154.1_222978_223317_+	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|609aa|down_3|CP031154.1_223627_225454_+	PRK03381, PRK03381, PII uridylyl-transferase; Provisional	NA|91aa|down_4|CP031154.1_225814_226087_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|460aa|down_5|CP031154.1_226145_227525_+	TIGR00665, DnaB, replicative DNA helicase	NA|503aa|down_6|CP031154.1_227621_229130_+	pfam08353, DUF1727, Domain of unknown function (DUF1727)	NA|250aa|down_7|CP031154.1_229198_229948_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|116aa|down_8|CP031154.1_230055_230403_+	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|717aa|down_9|CP031154.1_230511_232662_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]
GCA_003606305.1_ASM360630v1	CP031154	Bifidobacterium animalis subsp. lactis strain HN019 chromosome, complete genome	3	1324824-1325009	1	PILER-CR	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGCGTAAAAAGAGACAGA	19	0	0	NA	NA	NA	2	2	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|84aa|up_8|CP031154.1_1313214_1313466_+,NA|225aa|up_0|CP031154.1_1324146_1324821_+,NA|84aa|down_7|CP031154.1_1336220_1336472_+	NA|214aa|up_9|CP031154.1_1312400_1313042_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|84aa|up_8|CP031154.1_1313214_1313466_+	NA	NA|900aa|up_7|CP031154.1_1313549_1316249_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|857aa|up_6|CP031154.1_1316316_1318887_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|196aa|up_5|CP031154.1_1318935_1319523_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|437aa|up_4|CP031154.1_1319858_1321169_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|257aa|up_3|CP031154.1_1321282_1322053_-	pfam11361, DUF3159, Protein of unknown function (DUF3159)	NA|286aa|up_2|CP031154.1_1322121_1322979_-	pfam12502, DUF3710, Protein of unknown function (DUF3710)	NA|287aa|up_1|CP031154.1_1323112_1323973_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|225aa|up_0|CP031154.1_1324146_1324821_+	NA	NA|663aa|down_0|CP031154.1_1325080_1327069_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|319aa|down_1|CP031154.1_1327140_1328097_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|down_2|CP031154.1_1328110_1329037_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|547aa|down_3|CP031154.1_1329336_1330977_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|312aa|down_4|CP031154.1_1331253_1332189_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|269aa|down_5|CP031154.1_1332427_1333234_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|945aa|down_6|CP031154.1_1333241_1336076_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|84aa|down_7|CP031154.1_1336220_1336472_+	NA	NA|365aa|down_8|CP031154.1_1336487_1337582_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|372aa|down_9|CP031154.1_1337590_1338706_-	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold
GCA_003606305.1_ASM360630v1	CP031154	Bifidobacterium animalis subsp. lactis strain HN019 chromosome, complete genome	4	1516974-1518378	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csb3,cas3,csb2gr5,cas7,cas2,cas1	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Unclear	CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT	36,36,35	0	0	NA	NA	NA:NA:NA	19,19,19	19	Unclear	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|107aa|up_2|CP031154.1_1514721_1515042_+,NA|230aa|down_4|CP031154.1_1526100_1526790_+	NA|171aa|up_9|CP031154.1_1505223_1505736_+	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|72aa|up_8|CP031154.1_1506739_1506955_+	pfam18495, VbhA, Antitoxin VbhA	NA|103aa|up_7|CP031154.1_1507281_1507590_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csb3|349aa|up_6|CP031154.1_1507648_1508695_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|1018aa|up_5|CP031154.1_1508698_1511752_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|546aa|up_4|CP031154.1_1511742_1513380_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|399aa|up_3|CP031154.1_1513398_1514595_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|107aa|up_2|CP031154.1_1514721_1515042_+	NA	cas2|98aa|up_1|CP031154.1_1515008_1515302_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|544aa|up_0|CP031154.1_1515313_1516945_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|424aa|down_0|CP031154.1_1518557_1519829_-	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type	NA|1559aa|down_1|CP031154.1_1519902_1524579_-	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]	NA|206aa|down_2|CP031154.1_1524822_1525440_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|134aa|down_3|CP031154.1_1525436_1525838_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|230aa|down_4|CP031154.1_1526100_1526790_+	NA	NA|244aa|down_5|CP031154.1_1526786_1527518_-	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|809aa|down_6|CP031154.1_1527877_1530304_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|433aa|down_7|CP031154.1_1530660_1531959_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|106aa|down_8|CP031154.1_1532002_1532320_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|342aa|down_9|CP031154.1_1532320_1533346_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family
GCA_003606305.1_ASM360630v1	CP031154	Bifidobacterium animalis subsp. lactis strain HN019 chromosome, complete genome	5	1908427-1908517	4	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGGCGTCCATGTCACGCGCGGAATCGAT	29	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|71aa|up_3|CP031154.1_1903848_1904061_-,NA|750aa|down_9|CP031154.1_1920806_1923056_+	NA|170aa|up_9|CP031154.1_1894693_1895203_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|691aa|up_8|CP031154.1_1895352_1897425_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|313aa|up_7|CP031154.1_1897495_1898434_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|520aa|up_6|CP031154.1_1898476_1900036_-	NF012221, MARTX_Nterm, MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA|194aa|up_5|CP031154.1_1900085_1900667_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|997aa|up_4|CP031154.1_1900876_1903867_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|71aa|up_3|CP031154.1_1903848_1904061_-	NA	NA|332aa|up_2|CP031154.1_1904181_1905177_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|483aa|up_1|CP031154.1_1905325_1906774_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|378aa|up_0|CP031154.1_1906981_1908115_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|341aa|down_0|CP031154.1_1908538_1909561_+	pfam07885, Ion_trans_2, Ion channel	NA|706aa|down_1|CP031154.1_1909630_1911748_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|346aa|down_2|CP031154.1_1912127_1913165_+	PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional	NA|516aa|down_3|CP031154.1_1913832_1915380_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|298aa|down_4|CP031154.1_1915521_1916415_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|319aa|down_5|CP031154.1_1916411_1917368_+	COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	NA|209aa|down_6|CP031154.1_1917439_1918066_+	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator	NA|473aa|down_7|CP031154.1_1918195_1919614_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|335aa|down_8|CP031154.1_1919799_1920804_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|750aa|down_9|CP031154.1_1920806_1923056_+	NA
